Wall clock time and date at job start Mon Mar 30 2020 02:50:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 119.99627 * 2 1 4 4 H 1.48504 * 109.47089 * 269.99985 * 3 2 1 5 5 H 1.48491 * 109.47597 * 30.00428 * 3 2 1 6 6 H 1.48507 * 109.46678 * 150.00775 * 3 2 1 7 7 C 1.37877 * 119.99991 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00253 * 359.97438 * 7 2 1 9 9 C 1.50704 * 119.99603 * 179.97438 * 7 2 1 10 10 H 1.08997 * 109.46817 * 59.99964 * 9 7 2 11 11 N 1.46891 * 109.47147 * 299.99703 * 9 7 2 12 12 C 1.50705 * 109.46635 * 179.97438 * 9 7 2 13 13 C 1.38233 * 119.94445 * 100.00455 * 12 9 7 14 14 C 1.38095 * 120.13324 * 179.97438 * 13 12 9 15 15 C 1.39028 * 120.02934 * 0.02562 * 14 13 12 16 16 S 1.76200 * 120.05272 * 179.97438 * 15 14 13 17 17 C 1.38865 * 119.90003 * 359.97438 * 15 14 13 18 18 C 1.38596 * 119.86043 * 0.02562 * 17 15 14 19 19 O 1.35900 * 120.01228 * 179.97438 * 18 17 15 20 20 H 0.96998 * 120.00503 * 359.97438 * 1 2 3 21 21 H 1.00903 * 110.99879 * 176.05484 * 11 9 7 22 22 H 1.00903 * 110.99944 * 299.99660 * 11 9 7 23 23 H 1.08003 * 119.93258 * 359.97438 * 13 12 9 24 24 H 1.07994 * 119.98548 * 179.97438 * 14 13 12 25 25 H 1.34499 * 102.99977 * 270.02063 * 16 15 14 26 26 H 1.07997 * 120.06859 * 179.72366 * 17 15 14 27 27 H 0.96692 * 114.00034 * 90.00263 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 1 3.8752 -0.6803 0.8888 11 7 4.0007 -0.5013 -1.2005 12 6 4.0139 -2.6148 -0.0010 13 6 4.4396 -3.1963 -1.1806 14 6 4.9012 -4.4978 -1.1849 15 6 4.9381 -5.2268 -0.0016 16 16 5.5262 -6.8878 -0.0065 17 6 4.5107 -4.6440 1.1841 18 6 4.0483 -3.3374 1.1834 19 8 3.6289 -2.7642 2.3420 20 1 -0.4851 0.8400 0.0004 21 1 5.0073 -0.4312 -1.1925 22 1 3.6769 -0.9587 -2.0396 23 1 4.4112 -2.6315 -2.1008 24 1 5.2328 -4.9498 -2.1079 25 1 4.4104 -7.6032 -0.2349 26 1 4.5340 -5.2093 2.1040 27 1 4.3275 -2.3080 2.8305 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104508588.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:55 Heat of formation + Delta-G solvation = -35.985630 kcal Electronic energy + Delta-G solvation = -13270.839647 eV Core-core repulsion = 10926.108147 eV Total energy + Delta-G solvation = -2344.731500 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.056 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.91806 -37.63399 -36.63669 -34.03826 -31.24880 -30.74112 -28.38806 -24.89158 -23.49502 -21.76104 -19.88576 -18.99739 -18.10366 -17.25336 -17.03855 -16.59523 -16.21219 -15.80960 -15.10546 -14.84205 -14.40924 -13.91395 -13.65091 -13.47900 -12.79296 -12.69099 -12.31333 -12.02496 -11.75858 -11.51474 -11.23687 -10.74772 -9.85015 -9.49590 -9.42304 -9.18409 -8.23733 -6.36780 -0.08620 0.28295 0.67648 1.52021 1.59085 1.71989 1.77023 2.52705 2.61422 3.10701 3.36654 3.87277 4.02343 4.09581 4.19379 4.43555 4.69184 4.88071 4.97242 5.17022 5.27572 5.38869 5.66162 5.75438 6.11375 6.44440 6.74587 6.92947 6.98195 7.38288 8.90258 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.048250 B = 0.007636 C = 0.007309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 580.168294 B = 3666.035024 C = 3830.057156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.023 3.977 3 Si 1.007 2.993 4 H -0.274 1.274 5 H -0.327 1.327 6 H -0.256 1.256 7 C -0.502 4.502 8 H 0.017 0.983 9 C 0.230 3.770 10 H 0.050 0.950 11 N -0.844 5.844 12 C -0.095 4.095 13 C -0.124 4.124 14 C -0.075 4.075 15 C -0.120 4.120 16 S -0.114 6.114 17 C -0.104 4.104 18 C 0.090 3.910 19 O -0.500 6.500 20 H 0.264 0.736 21 H 0.337 0.663 22 H 0.343 0.657 23 H 0.143 0.857 24 H 0.158 0.842 25 H 0.077 0.923 26 H 0.147 0.853 27 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.497 -8.156 -0.686 16.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.175 4.175 3 Si 0.836 3.164 4 H -0.200 1.200 5 H -0.258 1.258 6 H -0.181 1.181 7 C -0.541 4.541 8 H 0.036 0.964 9 C 0.120 3.880 10 H 0.068 0.932 11 N -0.377 5.377 12 C -0.097 4.097 13 C -0.144 4.144 14 C -0.096 4.096 15 C -0.232 4.232 16 S 0.042 5.958 17 C -0.125 4.125 18 C 0.044 3.956 19 O -0.312 6.312 20 H 0.073 0.927 21 H 0.151 0.849 22 H 0.158 0.842 23 H 0.161 0.839 24 H 0.176 0.824 25 H 0.041 0.959 26 H 0.165 0.835 27 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges 13.928 -8.469 -0.554 16.310 hybrid contribution -0.832 0.476 -0.066 0.961 sum 13.096 -7.993 -0.620 15.355 Atomic orbital electron populations 1.70099 1.08761 1.28175 1.52195 1.25913 0.95205 1.03799 0.92615 0.84756 0.77403 0.76062 0.78175 1.20030 1.25759 1.18062 1.20779 0.89852 0.92218 1.51227 0.96414 1.18210 0.93148 0.85595 0.91036 0.93187 1.59003 1.14979 1.58181 1.05506 1.21738 0.94648 0.99403 0.93948 1.21128 0.99906 0.95732 0.97652 1.21759 0.96406 0.93522 0.97870 1.21096 1.08834 0.97493 0.95752 1.85657 1.15717 0.98304 1.96091 1.21925 0.96897 0.94654 0.99001 1.18454 0.98541 0.92067 0.86584 1.84906 1.39368 1.73431 1.33470 0.92732 0.84862 0.84210 0.83909 0.82443 0.95881 0.83526 0.74141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.63 13.96 21.45 0.30 -60.33 15 2 C 0.02 1.34 5.47 84.65 0.46 1.81 15 3 Si 1.01 48.46 26.03 68.60 1.79 50.25 15 4 H -0.27 -12.86 7.11 99.48 0.71 -12.15 15 5 H -0.33 -16.09 7.11 99.48 0.71 -15.39 15 6 H -0.26 -11.39 6.54 99.48 0.65 -10.73 15 7 C -0.50 -28.47 9.29 25.60 0.24 -28.23 15 8 H 0.02 1.15 7.98 -2.91 -0.02 1.13 15 9 C 0.23 10.03 1.99 43.43 0.09 10.11 15 10 H 0.05 2.23 6.91 -2.39 -0.02 2.22 15 11 N -0.84 -31.45 6.24 -174.96 -1.09 -32.54 15 12 C -0.09 -3.56 5.03 -19.73 -0.10 -3.66 15 13 C -0.12 -3.87 9.24 22.23 0.21 -3.67 15 14 C -0.08 -2.04 9.79 22.43 0.22 -1.82 15 15 C -0.12 -3.35 6.11 22.61 0.14 -3.21 15 16 S -0.11 -2.62 25.78 -56.49 -1.46 -4.08 15 17 C -0.10 -3.17 9.73 22.51 0.22 -2.96 15 18 C 0.09 3.26 6.66 22.49 0.15 3.41 15 19 O -0.50 -18.17 12.73 -92.42 -1.18 -19.35 15 20 H 0.26 15.82 8.31 -92.71 -0.77 15.05 15 21 H 0.34 10.05 9.06 -89.69 -0.81 9.24 15 22 H 0.34 12.19 7.28 -89.69 -0.65 11.54 15 23 H 0.14 3.92 6.24 -2.91 -0.02 3.90 15 24 H 0.16 3.30 8.06 -2.91 -0.02 3.27 15 25 H 0.08 1.70 9.07 73.35 0.67 2.37 15 26 H 0.15 3.93 8.06 -2.91 -0.02 3.91 15 27 H 0.40 10.04 9.06 -74.06 -0.67 9.37 15 Total: -1.00 -70.24 248.81 -0.30 -70.54 By element: Atomic # 1 Polarization: 24.01 SS G_CDS: -0.28 Total: 23.72 kcal Atomic # 6 Polarization: -29.83 SS G_CDS: 1.62 Total: -28.21 kcal Atomic # 7 Polarization: -92.08 SS G_CDS: -0.79 Total: -92.87 kcal Atomic # 8 Polarization: -18.17 SS G_CDS: -1.18 Total: -19.35 kcal Atomic # 14 Polarization: 48.46 SS G_CDS: 1.79 Total: 50.25 kcal Atomic # 16 Polarization: -2.62 SS G_CDS: -1.46 Total: -4.08 kcal Total: -70.24 -0.30 -70.54 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104508588.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.551 kcal (2) G-P(sol) polarization free energy of solvation -70.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds