Wall clock time and date at job start Mon Mar 30 2020 03:27:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38259 * 119.98789 * 2 1 4 4 C 1.38202 * 120.01288 * 179.71975 * 3 2 1 5 5 C 1.38365 * 119.98427 * 0.26295 * 4 3 2 6 6 Cl 1.73606 * 120.00923 * 180.02562 * 5 4 3 7 7 C 1.38333 * 119.97713 * 359.97438 * 5 4 3 8 8 C 1.38229 * 119.98735 * 0.02562 * 7 5 4 9 9 C 1.50701 * 119.99689 * 180.02562 * 8 7 5 10 10 H 1.08998 * 109.47307 * 219.99925 * 9 8 7 11 11 N 1.46903 * 109.46910 * 339.99968 * 9 8 7 12 12 C 1.50698 * 109.47011 * 99.99936 * 9 8 7 13 13 H 1.07996 * 120.00078 * 0.02562 * 12 9 8 14 14 C 1.37882 * 119.99639 * 180.02562 * 12 9 8 15 15 N 1.31511 * 120.00023 * 0.02562 * 14 12 9 16 16 Si 1.86800 * 119.99751 * 180.02562 * 14 12 9 17 17 H 1.48497 * 109.47444 * 59.99905 * 16 14 12 18 18 H 1.48499 * 109.47298 * 180.02562 * 16 14 12 19 19 H 1.48506 * 109.46998 * 300.00053 * 16 14 12 20 20 H 1.08999 * 109.46823 * 89.99667 * 1 2 3 21 21 H 1.09003 * 109.46991 * 209.99270 * 1 2 3 22 22 H 1.08998 * 109.46882 * 330.00144 * 1 2 3 23 23 H 1.08002 * 119.99550 * 0.02562 * 3 2 1 24 24 H 1.08004 * 120.00190 * 180.27785 * 4 3 2 25 25 H 1.08002 * 120.00713 * 180.02562 * 7 5 4 26 26 H 1.00907 * 110.99775 * 60.00066 * 11 9 8 27 27 H 1.00896 * 111.00006 * 183.95031 * 11 9 8 28 28 H 0.97000 * 119.99945 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1975 0.0000 4 6 3.5801 1.1981 0.0059 5 6 4.2721 0.0000 0.0062 6 17 6.0081 0.0000 0.0142 7 6 3.5802 -1.1979 0.0013 8 6 2.1979 -1.1972 -0.0046 9 6 1.4439 -2.5021 -0.0094 10 1 0.5833 -2.4220 -0.6735 11 7 2.3278 -3.5766 -0.4807 12 6 0.9730 -2.8153 1.3874 13 1 1.1970 -2.1371 2.1975 14 6 0.2563 -3.9677 1.6311 15 7 -0.0159 -4.7937 0.6447 16 14 -0.3280 -4.3556 3.3625 17 1 -1.2222 -3.2697 3.8382 18 1 -1.0698 -5.6420 3.3580 19 1 0.8442 -4.4639 4.2678 20 1 -0.3633 0.0001 -1.0277 21 1 -0.3633 -0.8901 0.5137 22 1 -0.3633 0.8900 0.5138 23 1 1.6578 2.1327 0.0004 24 1 4.1197 2.1337 0.0104 25 1 4.1198 -2.1334 0.0019 26 1 3.1338 -3.6709 0.1189 27 1 1.8278 -4.4499 -0.5544 28 1 -0.5205 -5.6042 0.8160 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104684539.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:55 Heat of formation + Delta-G solvation = -13.490119 kcal Electronic energy + Delta-G solvation = -13246.804988 eV Core-core repulsion = 10901.005260 eV Total energy + Delta-G solvation = -2345.799728 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.062 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.50008 -37.52315 -36.43049 -33.58918 -33.33181 -30.88037 -28.04815 -27.50818 -24.86195 -22.44320 -21.35863 -18.59027 -17.87356 -16.71627 -16.57099 -15.74626 -15.57282 -14.97964 -14.43848 -14.27358 -14.02475 -13.65364 -13.29718 -13.05790 -12.88843 -12.80909 -12.44461 -12.13987 -12.07980 -11.85699 -11.76658 -11.24182 -10.71472 -9.63926 -9.34147 -9.12958 -8.11391 -6.36061 0.36050 0.55775 1.25760 1.38817 1.40533 1.47801 2.36609 2.85572 3.06218 4.01512 4.08356 4.18862 4.36624 4.50536 4.77477 4.84744 4.91048 4.96469 5.10383 5.31887 5.41210 5.46885 5.56672 5.65885 5.95588 6.04838 6.14079 6.64261 6.92322 7.08958 7.38839 8.82839 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.031660 B = 0.008456 C = 0.007692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.193784 B = 3310.326822 C = 3639.163816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.096 4.096 3 C -0.108 4.108 4 C -0.126 4.126 5 C -0.049 4.049 6 Cl -0.077 7.077 7 C -0.114 4.114 8 C -0.052 4.052 9 C 0.248 3.752 10 H 0.024 0.976 11 N -0.846 5.846 12 C -0.549 4.549 13 H 0.045 0.955 14 C 0.027 3.973 15 N -0.914 5.914 16 Si 0.954 3.046 17 H -0.272 1.272 18 H -0.283 1.283 19 H -0.277 1.277 20 H 0.070 0.930 21 H 0.060 0.940 22 H 0.083 0.917 23 H 0.159 0.841 24 H 0.154 0.846 25 H 0.123 0.877 26 H 0.316 0.684 27 H 0.346 0.654 28 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.710 10.053 -0.333 11.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.096 4.096 3 C -0.125 4.125 4 C -0.144 4.144 5 C -0.075 4.075 6 Cl -0.049 7.049 7 C -0.133 4.133 8 C -0.052 4.052 9 C 0.138 3.862 10 H 0.042 0.958 11 N -0.376 5.376 12 C -0.589 4.589 13 H 0.063 0.937 14 C -0.174 4.174 15 N -0.553 5.553 16 Si 0.780 3.220 17 H -0.197 1.197 18 H -0.208 1.208 19 H -0.202 1.202 20 H 0.088 0.912 21 H 0.079 0.921 22 H 0.102 0.898 23 H 0.176 0.824 24 H 0.172 0.828 25 H 0.141 0.859 26 H 0.126 0.874 27 H 0.161 0.839 28 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 4.838 10.313 -1.059 11.440 hybrid contribution -0.422 -1.201 1.740 2.156 sum 4.415 9.112 0.681 10.148 Atomic orbital electron populations 1.20819 0.90574 1.03401 1.02280 1.20118 0.97327 0.92600 0.99578 1.21223 0.93355 0.97924 1.00041 1.21169 0.94355 0.96781 1.02117 1.20976 0.84092 0.95332 1.07103 1.98317 1.10407 1.98988 1.97157 1.20857 0.93936 0.97045 1.01483 1.20251 0.93214 0.96150 0.95627 1.17775 0.89888 0.85694 0.92892 0.95833 1.59548 1.11448 1.11725 1.54830 1.21846 1.35571 1.06450 0.95030 0.93668 1.25660 0.95275 0.96001 1.00471 1.69822 1.40327 1.12583 1.32592 0.85677 0.78397 0.77460 0.80496 1.19686 1.20810 1.20202 0.91150 0.92128 0.89795 0.82367 0.82846 0.85905 0.87352 0.83896 0.92309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.92 9.25 71.24 0.66 -3.26 15 2 C -0.10 -3.53 5.87 -19.86 -0.12 -3.64 15 3 C -0.11 -3.17 9.70 22.27 0.22 -2.96 15 4 C -0.13 -3.64 9.83 22.29 0.22 -3.42 15 5 C -0.05 -1.63 6.32 22.32 0.14 -1.49 15 6 Cl -0.08 -2.25 28.96 -2.72 -0.08 -2.33 15 7 C -0.11 -4.51 9.04 22.29 0.20 -4.31 15 8 C -0.05 -2.21 5.03 -19.87 -0.10 -2.31 15 9 C 0.25 12.19 2.28 43.42 0.10 12.29 15 10 H 0.02 1.29 7.30 -2.39 -0.02 1.28 15 11 N -0.85 -40.59 8.67 -174.95 -1.52 -42.10 15 12 C -0.55 -28.80 7.49 25.60 0.19 -28.61 15 13 H 0.05 2.42 7.74 -2.91 -0.02 2.40 15 14 C 0.03 1.39 5.38 84.66 0.46 1.84 15 15 N -0.91 -49.46 11.53 21.45 0.25 -49.21 15 16 Si 0.95 42.03 29.54 68.60 2.03 44.06 15 17 H -0.27 -11.73 7.11 99.48 0.71 -11.02 15 18 H -0.28 -12.22 7.11 99.48 0.71 -11.51 15 19 H -0.28 -12.11 7.11 99.48 0.71 -11.41 15 20 H 0.07 2.24 8.14 -2.39 -0.02 2.22 15 21 H 0.06 2.51 5.91 -2.39 -0.01 2.49 15 22 H 0.08 2.30 8.09 -2.39 -0.02 2.28 15 23 H 0.16 3.44 8.06 -2.91 -0.02 3.42 15 24 H 0.15 3.42 8.06 -2.91 -0.02 3.40 15 25 H 0.12 4.94 6.25 -2.91 -0.02 4.92 15 26 H 0.32 14.52 7.28 -89.69 -0.65 13.87 15 27 H 0.35 17.76 7.07 -89.70 -0.63 17.13 15 28 H 0.27 13.87 8.31 -92.71 -0.77 13.10 15 Total: -1.00 -55.44 252.41 2.55 -52.89 By element: Atomic # 1 Polarization: 32.65 SS G_CDS: -0.10 Total: 32.56 kcal Atomic # 6 Polarization: -37.83 SS G_CDS: 1.97 Total: -35.86 kcal Atomic # 7 Polarization: -90.04 SS G_CDS: -1.27 Total: -91.31 kcal Atomic # 14 Polarization: 42.03 SS G_CDS: 2.03 Total: 44.06 kcal Atomic # 17 Polarization: -2.25 SS G_CDS: -0.08 Total: -2.33 kcal Total: -55.44 2.55 -52.89 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104684539.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.398 kcal (2) G-P(sol) polarization free energy of solvation -55.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds