Wall clock time and date at job start Mon Mar 30 2020 03:31:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38261 * 119.99771 * 2 1 4 4 C 1.38222 * 120.02967 * 179.77013 * 3 2 1 5 5 C 1.38235 * 120.01040 * 0.50918 * 4 3 2 6 6 C 1.50703 * 120.00564 * 179.77054 * 5 4 3 7 7 H 1.09002 * 109.47152 * 219.71957 * 6 5 4 8 8 N 1.46899 * 109.47107 * 339.71870 * 6 5 4 9 9 C 1.50699 * 109.47227 * 99.72074 * 6 5 4 10 10 H 1.07999 * 120.00019 * 359.97438 * 9 6 5 11 11 C 1.37877 * 120.00129 * 180.02562 * 9 6 5 12 12 N 1.31519 * 119.99723 * 359.97438 * 11 9 6 13 13 Si 1.86803 * 119.99900 * 179.97438 * 11 9 6 14 14 H 1.48491 * 109.47312 * 359.97438 * 13 11 9 15 15 H 1.48501 * 109.46948 * 119.99892 * 13 11 9 16 16 H 1.48500 * 109.46809 * 239.99811 * 13 11 9 17 17 C 1.38328 * 119.98656 * 359.48692 * 5 4 3 18 18 Cl 1.73604 * 120.01193 * 180.23040 * 17 5 4 19 19 C 1.38193 * 119.99368 * 180.02562 * 2 1 3 20 20 H 1.08997 * 109.47082 * 269.98216 * 1 2 3 21 21 H 1.08998 * 109.47148 * 29.97824 * 1 2 3 22 22 H 1.09000 * 109.47526 * 149.97720 * 1 2 3 23 23 H 1.08003 * 119.98683 * 0.03885 * 3 2 1 24 24 H 1.08000 * 119.99532 * 180.27430 * 4 3 2 25 25 H 1.00893 * 111.00096 * 296.05175 * 8 6 5 26 26 H 1.00903 * 110.99833 * 59.99796 * 8 6 5 27 27 H 0.97003 * 119.99231 * 179.97438 * 12 11 9 28 28 H 1.08006 * 120.00345 * 359.97438 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1982 0.0048 5 6 4.2725 0.0016 -0.0010 6 6 5.7795 0.0026 -0.0010 7 1 6.1434 -0.7844 -0.6616 8 7 6.2683 1.3043 -0.4748 9 6 6.2820 -0.2438 1.3982 10 1 5.5803 -0.3864 2.2067 11 6 7.6376 -0.2861 1.6464 12 7 8.4921 -0.1120 0.6619 13 14 8.2605 -0.5908 3.3810 14 1 7.1056 -0.7532 4.3002 15 1 9.0867 -1.8246 3.4006 16 1 9.0843 0.5637 3.8210 17 6 3.5815 -1.1968 -0.0009 18 17 4.4500 -2.6999 -0.0022 19 6 2.1978 -1.1969 -0.0005 20 1 -0.3633 -0.0003 1.0276 21 1 -0.3633 0.8902 -0.5135 22 1 -0.3634 -0.8898 -0.5142 23 1 1.6579 2.1326 0.0006 24 1 4.1198 2.1338 0.0093 25 1 5.9987 1.4646 -1.4337 26 1 5.9443 2.0510 0.1215 27 1 9.4458 -0.1414 0.8367 28 1 1.6577 -2.1322 -0.0005 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104684938.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:05 Heat of formation + Delta-G solvation = 11.736348 kcal Electronic energy + Delta-G solvation = -13196.173827 eV Core-core repulsion = 10851.468001 eV Total energy + Delta-G solvation = -2344.705826 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.062 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.08779 -35.71355 -34.94394 -32.08232 -30.71531 -30.14498 -27.01438 -25.40937 -22.43572 -21.80522 -19.84622 -16.42790 -15.97953 -15.28001 -14.87872 -14.31148 -14.01120 -13.63156 -13.30266 -12.78186 -12.49799 -12.34564 -12.02160 -11.43593 -11.18196 -10.87484 -10.71560 -10.57636 -10.54386 -10.15619 -9.66241 -9.22859 -8.40800 -8.30113 -7.77411 -7.12498 -5.83511 -3.96963 1.71084 1.82014 2.91889 3.35713 3.43776 3.48003 4.13997 4.54194 5.10540 5.19491 5.38746 5.42258 5.55025 5.68456 5.82896 5.90397 5.99777 6.22348 6.31966 6.48336 6.80024 6.88257 6.93192 7.36264 7.49267 7.94549 8.21339 8.62885 8.99095 9.16313 9.70406 11.21096 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.032292 B = 0.009290 C = 0.008511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.880790 B = 3013.115359 C = 3289.252772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.109 4.109 3 C -0.118 4.118 4 C -0.121 4.121 5 C -0.069 4.069 6 C 0.252 3.748 7 H 0.059 0.941 8 N -0.810 5.810 9 C -0.518 4.518 10 H 0.052 0.948 11 C 0.085 3.915 12 N -0.847 5.847 13 Si 0.882 3.118 14 H -0.274 1.274 15 H -0.285 1.285 16 H -0.285 1.285 17 C -0.028 4.028 18 Cl -0.065 7.065 19 C -0.116 4.116 20 H 0.065 0.935 21 H 0.062 0.938 22 H 0.061 0.939 23 H 0.116 0.884 24 H 0.124 0.876 25 H 0.299 0.701 26 H 0.317 0.683 27 H 0.254 0.746 28 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.416 0.253 -2.220 12.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.109 4.109 3 C -0.136 4.136 4 C -0.139 4.139 5 C -0.072 4.072 6 C 0.142 3.858 7 H 0.077 0.923 8 N -0.337 5.337 9 C -0.557 4.557 10 H 0.070 0.930 11 C -0.122 4.122 12 N -0.482 5.482 13 Si 0.710 3.290 14 H -0.199 1.199 15 H -0.211 1.211 16 H -0.211 1.211 17 C -0.055 4.055 18 Cl -0.036 7.036 19 C -0.135 4.135 20 H 0.083 0.917 21 H 0.081 0.919 22 H 0.080 0.920 23 H 0.134 0.866 24 H 0.142 0.858 25 H 0.109 0.891 26 H 0.131 0.869 27 H 0.064 0.936 28 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -11.379 -0.164 -2.146 11.581 hybrid contribution -0.560 -0.037 0.932 1.088 sum -11.939 -0.201 -1.214 12.002 Atomic orbital electron populations 1.20677 0.91420 1.02192 1.01858 1.19605 0.95569 0.92685 1.03037 1.20972 0.94299 0.97057 1.01317 1.20974 0.93574 0.97921 1.01442 1.21776 1.02013 0.90592 0.92854 1.18316 0.80226 0.89619 0.97607 0.92323 1.59168 1.67265 1.04184 1.03034 1.20695 0.91377 1.51696 0.91918 0.92960 1.24896 0.96912 0.94256 0.96087 1.70116 1.01361 1.46390 1.30346 0.86723 0.78916 0.77700 0.85709 1.19892 1.21096 1.21115 1.20763 0.91467 0.87844 1.05446 1.98342 1.77178 1.31389 1.96716 1.20826 0.92182 0.97963 1.02549 0.91657 0.91916 0.91969 0.86578 0.85798 0.89091 0.86939 0.93573 0.86078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.16 10.01 36.00 0.36 -0.80 15 2 C -0.11 -1.64 5.88 -104.63 -0.62 -2.26 15 3 C -0.12 -1.85 9.70 -39.58 -0.38 -2.23 15 4 C -0.12 -2.20 9.25 -39.59 -0.37 -2.57 15 5 C -0.07 -1.46 5.02 -104.59 -0.52 -1.98 15 6 C 0.25 6.18 2.31 -70.02 -0.16 6.02 15 7 H 0.06 1.60 7.35 -51.93 -0.38 1.22 15 8 N -0.81 -18.71 8.02 -6.65 -0.05 -18.77 15 9 C -0.52 -14.12 8.49 -34.44 -0.29 -14.41 15 10 H 0.05 1.46 7.74 -52.49 -0.41 1.06 15 11 C 0.08 2.37 5.39 -17.82 -0.10 2.28 15 12 N -0.85 -24.65 12.77 55.43 0.71 -23.94 15 13 Si 0.88 21.58 29.54 -169.99 -5.02 16.56 15 14 H -0.27 -6.68 7.11 56.52 0.40 -6.28 15 15 H -0.28 -6.95 7.11 56.52 0.40 -6.54 15 16 H -0.28 -6.94 7.11 56.52 0.40 -6.54 15 17 C -0.03 -0.56 6.30 -39.50 -0.25 -0.80 15 18 Cl -0.07 -1.31 27.33 -51.86 -1.42 -2.73 15 19 C -0.12 -1.95 9.49 -39.55 -0.38 -2.33 15 20 H 0.06 0.67 8.14 -51.93 -0.42 0.25 15 21 H 0.06 0.61 8.09 -51.93 -0.42 0.19 15 22 H 0.06 0.62 8.09 -51.93 -0.42 0.20 15 23 H 0.12 1.48 8.06 -52.48 -0.42 1.06 15 24 H 0.12 2.12 6.25 -52.49 -0.33 1.79 15 25 H 0.30 6.15 9.06 -39.30 -0.36 5.80 15 26 H 0.32 6.92 7.28 -39.29 -0.29 6.63 15 27 H 0.25 7.09 8.31 -40.82 -0.34 6.75 15 28 H 0.12 1.77 8.06 -52.48 -0.42 1.34 15 LS Contribution 257.22 15.07 3.88 3.88 Total: -1.00 -29.55 257.22 -7.61 -37.17 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: -3.00 Total: 6.93 kcal Atomic # 6 Polarization: -16.39 SS G_CDS: -2.70 Total: -19.10 kcal Atomic # 7 Polarization: -43.36 SS G_CDS: 0.65 Total: -42.71 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Atomic # 17 Polarization: -1.31 SS G_CDS: -1.42 Total: -2.73 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -29.55 -7.61 -37.17 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104684938.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.902 kcal (2) G-P(sol) polarization free energy of solvation -29.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.165 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds