Wall clock time and date at job start Mon Mar 30 2020 03:31:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38261 * 119.99771 * 2 1 4 4 C 1.38222 * 120.02967 * 179.77013 * 3 2 1 5 5 C 1.38235 * 120.01040 * 0.50918 * 4 3 2 6 6 C 1.50703 * 120.00564 * 179.77054 * 5 4 3 7 7 H 1.09002 * 109.47152 * 219.71957 * 6 5 4 8 8 N 1.46899 * 109.47107 * 339.71870 * 6 5 4 9 9 C 1.50699 * 109.47227 * 99.72074 * 6 5 4 10 10 H 1.07999 * 120.00019 * 359.97438 * 9 6 5 11 11 C 1.37877 * 120.00129 * 180.02562 * 9 6 5 12 12 N 1.31519 * 119.99723 * 359.97438 * 11 9 6 13 13 Si 1.86803 * 119.99900 * 179.97438 * 11 9 6 14 14 H 1.48491 * 109.47312 * 359.97438 * 13 11 9 15 15 H 1.48501 * 109.46948 * 119.99892 * 13 11 9 16 16 H 1.48500 * 109.46809 * 239.99811 * 13 11 9 17 17 C 1.38328 * 119.98656 * 359.48692 * 5 4 3 18 18 Cl 1.73604 * 120.01193 * 180.23040 * 17 5 4 19 19 C 1.38193 * 119.99368 * 180.02562 * 2 1 3 20 20 H 1.08997 * 109.47082 * 269.98216 * 1 2 3 21 21 H 1.08998 * 109.47148 * 29.97824 * 1 2 3 22 22 H 1.09000 * 109.47526 * 149.97720 * 1 2 3 23 23 H 1.08003 * 119.98683 * 0.03885 * 3 2 1 24 24 H 1.08000 * 119.99532 * 180.27430 * 4 3 2 25 25 H 1.00893 * 111.00096 * 296.05175 * 8 6 5 26 26 H 1.00903 * 110.99833 * 59.99796 * 8 6 5 27 27 H 0.97003 * 119.99231 * 179.97438 * 12 11 9 28 28 H 1.08006 * 120.00345 * 359.97438 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1982 0.0048 5 6 4.2725 0.0016 -0.0010 6 6 5.7795 0.0026 -0.0010 7 1 6.1434 -0.7844 -0.6616 8 7 6.2683 1.3043 -0.4748 9 6 6.2820 -0.2438 1.3982 10 1 5.5803 -0.3864 2.2067 11 6 7.6376 -0.2861 1.6464 12 7 8.4921 -0.1120 0.6619 13 14 8.2605 -0.5908 3.3810 14 1 7.1056 -0.7532 4.3002 15 1 9.0867 -1.8246 3.4006 16 1 9.0843 0.5637 3.8210 17 6 3.5815 -1.1968 -0.0009 18 17 4.4500 -2.6999 -0.0022 19 6 2.1978 -1.1969 -0.0005 20 1 -0.3633 -0.0003 1.0276 21 1 -0.3633 0.8902 -0.5135 22 1 -0.3634 -0.8898 -0.5142 23 1 1.6579 2.1326 0.0006 24 1 4.1198 2.1338 0.0093 25 1 5.9987 1.4646 -1.4337 26 1 5.9443 2.0510 0.1215 27 1 9.4458 -0.1414 0.8367 28 1 1.6577 -2.1322 -0.0005 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104684938.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:05 Heat of formation + Delta-G solvation = -6.825861 kcal Electronic energy + Delta-G solvation = -13196.978745 eV Core-core repulsion = 10851.468001 eV Total energy + Delta-G solvation = -2345.510744 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.062 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.47860 -37.20416 -36.65710 -33.93738 -32.23444 -31.53177 -28.61357 -27.10448 -23.98134 -23.26259 -21.37884 -18.49688 -17.43420 -16.74602 -16.56181 -15.95647 -15.81042 -14.78417 -14.66494 -14.26278 -14.22801 -13.66402 -13.33004 -12.95002 -12.83482 -12.71339 -12.39303 -12.09551 -12.02811 -11.86903 -11.36722 -11.19382 -10.52760 -9.68531 -9.25359 -8.91439 -7.94797 -6.13692 0.34635 0.45440 1.40548 1.43117 1.44269 1.53169 2.46980 2.80334 3.28989 3.96074 3.97770 4.19780 4.33783 4.49419 4.54185 4.67780 4.89728 4.95717 5.01029 5.26069 5.33697 5.42403 5.61209 5.70183 5.78926 6.03086 6.22486 6.68336 7.12092 7.26836 7.56602 9.08802 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.032292 B = 0.009290 C = 0.008511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.880790 B = 3013.115359 C = 3289.252772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.096 4.096 3 C -0.113 4.113 4 C -0.126 4.126 5 C -0.104 4.104 6 C 0.261 3.739 7 H 0.021 0.979 8 N -0.821 5.821 9 C -0.521 4.521 10 H 0.038 0.962 11 C 0.038 3.962 12 N -0.880 5.880 13 Si 0.940 3.060 14 H -0.273 1.273 15 H -0.283 1.283 16 H -0.280 1.280 17 C -0.048 4.048 18 Cl -0.082 7.082 19 C -0.120 4.120 20 H 0.079 0.921 21 H 0.083 0.917 22 H 0.075 0.925 23 H 0.153 0.847 24 H 0.130 0.870 25 H 0.312 0.688 26 H 0.325 0.675 27 H 0.254 0.746 28 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.867 1.043 -1.739 15.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.097 4.097 3 C -0.131 4.131 4 C -0.144 4.144 5 C -0.107 4.107 6 C 0.150 3.850 7 H 0.039 0.961 8 N -0.349 5.349 9 C -0.560 4.560 10 H 0.056 0.944 11 C -0.165 4.165 12 N -0.516 5.516 13 Si 0.766 3.234 14 H -0.197 1.197 15 H -0.209 1.209 16 H -0.206 1.206 17 C -0.075 4.075 18 Cl -0.053 7.053 19 C -0.139 4.139 20 H 0.098 0.902 21 H 0.102 0.898 22 H 0.094 0.906 23 H 0.171 0.829 24 H 0.148 0.852 25 H 0.124 0.876 26 H 0.138 0.862 27 H 0.063 0.937 28 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -13.845 0.627 -1.661 13.959 hybrid contribution 0.058 -0.256 0.744 0.789 sum -13.787 0.371 -0.917 13.822 Atomic orbital electron populations 1.20780 0.87917 1.04010 1.03262 1.20161 0.97968 0.91655 0.99892 1.21378 0.93195 0.98983 0.99550 1.21116 0.95029 0.96972 1.01331 1.21460 1.00118 0.92452 0.96669 1.17856 0.82857 0.88959 0.95287 0.96125 1.58956 1.67906 1.03951 1.04043 1.20892 0.91240 1.50797 0.93031 0.94354 1.25564 0.97263 0.94374 0.99335 1.70229 1.01406 1.47937 1.32051 0.85816 0.78248 0.77582 0.81752 1.19731 1.20917 1.20597 1.21000 0.92755 0.86900 1.06848 1.98326 1.77848 1.32259 1.96894 1.21135 0.90891 0.99886 1.01980 0.90249 0.89818 0.90598 0.82899 0.85247 0.87637 0.86179 0.93725 0.83974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.77 10.01 71.23 0.71 -1.06 15 2 C -0.10 -2.56 5.88 -19.87 -0.12 -2.68 15 3 C -0.11 -3.15 9.70 22.27 0.22 -2.93 15 4 C -0.13 -4.42 9.25 22.27 0.21 -4.21 15 5 C -0.10 -4.40 5.02 -19.84 -0.10 -4.50 15 6 C 0.26 13.11 2.31 43.42 0.10 13.21 15 7 H 0.02 1.19 7.35 -2.39 -0.02 1.18 15 8 N -0.82 -38.51 8.02 -174.95 -1.40 -39.92 15 9 C -0.52 -28.96 8.49 25.60 0.22 -28.74 15 10 H 0.04 2.19 7.74 -2.91 -0.02 2.16 15 11 C 0.04 2.14 5.39 84.65 0.46 2.60 15 12 N -0.88 -52.25 12.77 21.45 0.27 -51.97 15 13 Si 0.94 44.89 29.54 68.60 2.03 46.92 15 14 H -0.27 -12.81 7.11 99.48 0.71 -12.11 15 15 H -0.28 -13.35 7.11 99.48 0.71 -12.65 15 16 H -0.28 -13.08 7.11 99.48 0.71 -12.37 15 17 C -0.05 -1.90 6.30 22.32 0.14 -1.76 15 18 Cl -0.08 -3.37 27.33 -2.72 -0.07 -3.45 15 19 C -0.12 -3.78 9.49 22.29 0.21 -3.57 15 20 H 0.08 1.23 8.14 -2.39 -0.02 1.21 15 21 H 0.08 1.14 8.09 -2.39 -0.02 1.12 15 22 H 0.08 1.14 8.09 -2.39 -0.02 1.12 15 23 H 0.15 3.12 8.06 -2.91 -0.02 3.10 15 24 H 0.13 4.26 6.25 -2.91 -0.02 4.25 15 25 H 0.31 13.04 9.06 -89.70 -0.81 12.23 15 26 H 0.32 14.22 7.28 -89.69 -0.65 13.57 15 27 H 0.25 14.41 8.31 -92.71 -0.77 13.64 15 28 H 0.14 3.78 8.06 -2.91 -0.02 3.75 15 Total: -1.00 -64.44 257.22 2.59 -61.85 By element: Atomic # 1 Polarization: 20.49 SS G_CDS: -0.28 Total: 20.21 kcal Atomic # 6 Polarization: -35.68 SS G_CDS: 2.04 Total: -33.64 kcal Atomic # 7 Polarization: -90.76 SS G_CDS: -1.13 Total: -91.89 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Atomic # 17 Polarization: -3.37 SS G_CDS: -0.07 Total: -3.45 kcal Total: -64.44 2.59 -61.85 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104684938.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.021 kcal (2) G-P(sol) polarization free energy of solvation -64.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds