Wall clock time and date at job start Mon Mar 30 2020 03:31:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38377 * 120.00540 * 2 1 4 4 Cl 1.73600 * 120.01364 * 359.97438 * 3 2 1 5 5 C 1.38329 * 119.97041 * 180.27214 * 3 2 1 6 6 C 1.38231 * 119.98828 * 359.72866 * 5 3 2 7 7 C 1.38226 * 120.01358 * 359.97438 * 6 5 3 8 8 C 1.38183 * 120.00723 * 179.74338 * 2 1 3 9 9 C 1.50706 * 119.99286 * 0.02562 * 8 2 1 10 10 H 1.09000 * 109.47203 * 324.71860 * 9 8 2 11 11 N 1.46899 * 109.47077 * 204.72296 * 9 8 2 12 12 C 1.50700 * 109.47193 * 84.72358 * 9 8 2 13 13 H 1.07996 * 120.00005 * 25.14770 * 12 9 8 14 14 C 1.37874 * 119.99831 * 205.14534 * 12 9 8 15 15 N 1.31519 * 120.00138 * 357.50527 * 14 12 9 16 16 Si 1.86794 * 120.00035 * 177.51153 * 14 12 9 17 17 H 1.48501 * 109.47638 * 180.02562 * 16 14 12 18 18 H 1.48503 * 109.47214 * 299.99942 * 16 14 12 19 19 H 1.48497 * 109.47267 * 59.99719 * 16 14 12 20 20 H 1.08998 * 109.47540 * 270.25507 * 1 2 3 21 21 H 1.09005 * 109.47003 * 30.25875 * 1 2 3 22 22 H 1.08997 * 109.46926 * 150.25034 * 1 2 3 23 23 H 1.08006 * 120.00588 * 179.70162 * 5 3 2 24 24 H 1.08006 * 119.99584 * 179.97438 * 6 5 3 25 25 H 1.08003 * 119.98568 * 180.02562 * 7 6 5 26 26 H 1.00902 * 111.00548 * 173.78633 * 11 9 8 27 27 H 1.00898 * 111.00445 * 297.74554 * 11 9 8 28 28 H 0.96998 * 119.99681 * 354.22026 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1990 1.1983 0.0000 4 17 1.3315 2.7020 -0.0007 5 6 3.5823 1.1975 -0.0057 6 6 4.2725 -0.0002 -0.0057 7 6 3.5807 -1.1969 0.0005 8 6 2.1981 -1.1966 0.0054 9 6 1.4446 -2.5017 0.0106 10 1 0.5362 -2.3944 0.6034 11 7 2.2890 -3.5523 0.5947 12 6 1.0808 -2.8775 -1.4027 13 1 1.6699 -2.5071 -2.2286 14 6 -0.0041 -3.6941 -1.6414 15 7 -0.6920 -4.1850 -0.6336 16 14 -0.4969 -4.1035 -3.3960 17 1 -1.6868 -4.9919 -3.3817 18 1 -0.8239 -2.8508 -4.1235 19 1 0.6278 -4.7927 -4.0781 20 1 -0.3634 0.0046 1.0276 21 1 -0.3633 0.8877 -0.5179 22 1 -0.3633 -0.8922 -0.5099 23 1 4.1230 2.1325 -0.0106 24 1 5.3526 -0.0010 -0.0106 25 1 4.1204 -2.1324 0.0009 26 1 1.7730 -4.4127 0.7028 27 1 3.1208 -3.6966 0.0421 28 1 -0.3880 -4.0422 0.2763 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104684941.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:07 Heat of formation + Delta-G solvation = -0.486104 kcal Electronic energy + Delta-G solvation = -13351.724353 eV Core-core repulsion = 11006.488521 eV Total energy + Delta-G solvation = -2345.235832 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.062 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.13841 -36.20883 -34.94256 -32.21087 -31.65980 -29.32282 -26.39280 -25.61346 -23.12728 -21.05943 -20.07621 -17.14279 -16.28018 -15.50571 -14.60438 -14.46431 -13.85796 -13.66880 -12.89303 -12.69307 -12.56492 -12.19335 -11.89826 -11.65615 -11.28692 -10.93474 -10.93399 -10.67244 -10.39370 -10.23317 -9.67221 -9.58395 -8.71726 -8.09816 -8.09391 -7.37529 -6.52178 -4.33493 1.73945 1.89015 2.55177 3.33552 3.35609 3.54013 4.20131 4.40854 5.14480 5.27773 5.31662 5.58867 5.80143 5.82180 6.12234 6.19556 6.25440 6.29968 6.50442 6.74064 6.79490 6.96939 6.99498 7.32806 7.49970 7.80891 8.15201 8.37973 8.56857 8.64412 9.38491 10.79904 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.030405 B = 0.009248 C = 0.008102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.690601 B = 3026.922585 C = 3455.005068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.073 4.073 3 C -0.037 4.037 4 Cl -0.090 7.090 5 C -0.136 4.136 6 C -0.121 4.121 7 C -0.109 4.109 8 C -0.013 4.013 9 C 0.221 3.779 10 H 0.059 0.941 11 N -0.855 5.855 12 C -0.621 4.621 13 H 0.050 0.950 14 C 0.031 3.969 15 N -0.903 5.903 16 Si 1.064 2.936 17 H -0.281 1.281 18 H -0.286 1.286 19 H -0.287 1.287 20 H 0.062 0.938 21 H 0.061 0.939 22 H 0.093 0.907 23 H 0.121 0.879 24 H 0.120 0.880 25 H 0.124 0.876 26 H 0.333 0.667 27 H 0.321 0.679 28 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.471 7.755 0.787 9.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.074 4.074 3 C -0.063 4.063 4 Cl -0.061 7.061 5 C -0.155 4.155 6 C -0.139 4.139 7 C -0.128 4.128 8 C -0.014 4.014 9 C 0.112 3.888 10 H 0.077 0.923 11 N -0.382 5.382 12 C -0.661 4.661 13 H 0.068 0.932 14 C -0.176 4.176 15 N -0.538 5.538 16 Si 0.892 3.108 17 H -0.206 1.206 18 H -0.212 1.212 19 H -0.214 1.214 20 H 0.081 0.919 21 H 0.080 0.920 22 H 0.112 0.888 23 H 0.139 0.861 24 H 0.138 0.862 25 H 0.142 0.858 26 H 0.144 0.856 27 H 0.132 0.868 28 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 4.279 7.599 0.540 8.738 hybrid contribution 1.038 0.528 -0.100 1.169 sum 5.317 8.127 0.440 9.722 Atomic orbital electron populations 1.20884 0.90678 1.04187 1.01930 1.19576 0.96845 0.90651 1.00340 1.20727 0.92084 0.85811 1.07705 1.98302 1.77550 1.33093 1.97159 1.20744 0.91805 0.98542 1.04421 1.20958 0.99296 0.92034 1.01660 1.21052 0.94229 0.97686 0.99804 1.20149 0.93340 0.95249 0.92679 1.18224 0.91148 0.84871 0.94543 0.92305 1.59604 1.10698 1.12159 1.55752 1.22459 1.17429 1.33726 0.92438 0.93182 1.25869 0.92769 0.93197 1.05734 1.70840 1.39471 1.43289 1.00218 0.83604 0.76453 0.76673 0.74083 1.20630 1.21238 1.21372 0.91907 0.91972 0.88819 0.86132 0.86187 0.85766 0.85558 0.86785 0.91724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.37 8.82 36.01 0.32 -2.06 15 2 C -0.07 -1.48 5.88 -104.59 -0.62 -2.10 15 3 C -0.04 -0.67 6.31 -39.50 -0.25 -0.92 15 4 Cl -0.09 -1.43 27.30 -51.86 -1.42 -2.84 15 5 C -0.14 -2.24 9.83 -39.55 -0.39 -2.63 15 6 C -0.12 -1.98 10.05 -39.59 -0.40 -2.38 15 7 C -0.11 -2.07 9.27 -39.58 -0.37 -2.44 15 8 C -0.01 -0.28 5.03 -104.63 -0.53 -0.81 15 9 C 0.22 5.20 1.89 -70.01 -0.13 5.07 15 10 H 0.06 1.51 5.84 -51.93 -0.30 1.21 15 11 N -0.85 -18.44 8.76 -6.65 -0.06 -18.50 15 12 C -0.62 -16.06 7.77 -34.44 -0.27 -16.33 15 13 H 0.05 1.35 7.81 -52.49 -0.41 0.94 15 14 C 0.03 0.81 5.46 -17.82 -0.10 0.71 15 15 N -0.90 -25.05 13.58 55.43 0.75 -24.29 15 16 Si 1.06 23.92 29.90 -169.99 -5.08 18.83 15 17 H -0.28 -6.37 7.11 56.52 0.40 -5.97 15 18 H -0.29 -6.27 7.11 56.52 0.40 -5.87 15 19 H -0.29 -6.23 7.11 56.52 0.40 -5.83 15 20 H 0.06 1.16 8.14 -51.93 -0.42 0.73 15 21 H 0.06 1.12 6.92 -51.93 -0.36 0.76 15 22 H 0.09 2.11 6.15 -51.93 -0.32 1.79 15 23 H 0.12 1.66 8.06 -52.48 -0.42 1.24 15 24 H 0.12 1.58 8.06 -52.48 -0.42 1.15 15 25 H 0.12 2.23 6.35 -52.48 -0.33 1.89 15 26 H 0.33 7.41 8.54 -39.29 -0.34 7.07 15 27 H 0.32 6.53 7.31 -39.29 -0.29 6.24 15 28 H 0.27 7.47 6.32 -40.82 -0.26 7.21 15 LS Contribution 250.66 15.07 3.78 3.78 Total: -1.00 -26.91 250.66 -7.42 -34.33 By element: Atomic # 1 Polarization: 15.23 SS G_CDS: -2.67 Total: 12.57 kcal Atomic # 6 Polarization: -21.15 SS G_CDS: -2.72 Total: -23.88 kcal Atomic # 7 Polarization: -43.48 SS G_CDS: 0.69 Total: -42.79 kcal Atomic # 14 Polarization: 23.92 SS G_CDS: -5.08 Total: 18.83 kcal Atomic # 17 Polarization: -1.43 SS G_CDS: -1.42 Total: -2.84 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -26.91 -7.42 -34.33 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104684941.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.847 kcal (2) G-P(sol) polarization free energy of solvation -26.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds