Wall clock time and date at job start Mon Mar 30 2020 03:31:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38377 * 120.00540 * 2 1 4 4 Cl 1.73600 * 120.01364 * 359.97438 * 3 2 1 5 5 C 1.38329 * 119.97041 * 180.27214 * 3 2 1 6 6 C 1.38231 * 119.98828 * 359.72866 * 5 3 2 7 7 C 1.38226 * 120.01358 * 359.97438 * 6 5 3 8 8 C 1.38183 * 120.00723 * 179.74338 * 2 1 3 9 9 C 1.50706 * 119.99286 * 0.02562 * 8 2 1 10 10 H 1.09000 * 109.47203 * 324.71860 * 9 8 2 11 11 N 1.46899 * 109.47077 * 204.72296 * 9 8 2 12 12 C 1.50700 * 109.47193 * 84.72358 * 9 8 2 13 13 H 1.07996 * 120.00005 * 25.14770 * 12 9 8 14 14 C 1.37874 * 119.99831 * 205.14534 * 12 9 8 15 15 N 1.31519 * 120.00138 * 357.50527 * 14 12 9 16 16 Si 1.86794 * 120.00035 * 177.51153 * 14 12 9 17 17 H 1.48501 * 109.47638 * 180.02562 * 16 14 12 18 18 H 1.48503 * 109.47214 * 299.99942 * 16 14 12 19 19 H 1.48497 * 109.47267 * 59.99719 * 16 14 12 20 20 H 1.08998 * 109.47540 * 270.25507 * 1 2 3 21 21 H 1.09005 * 109.47003 * 30.25875 * 1 2 3 22 22 H 1.08997 * 109.46926 * 150.25034 * 1 2 3 23 23 H 1.08006 * 120.00588 * 179.70162 * 5 3 2 24 24 H 1.08006 * 119.99584 * 179.97438 * 6 5 3 25 25 H 1.08003 * 119.98568 * 180.02562 * 7 6 5 26 26 H 1.00902 * 111.00548 * 173.78633 * 11 9 8 27 27 H 1.00898 * 111.00445 * 297.74554 * 11 9 8 28 28 H 0.96998 * 119.99681 * 354.22026 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1990 1.1983 0.0000 4 17 1.3315 2.7020 -0.0007 5 6 3.5823 1.1975 -0.0057 6 6 4.2725 -0.0002 -0.0057 7 6 3.5807 -1.1969 0.0005 8 6 2.1981 -1.1966 0.0054 9 6 1.4446 -2.5017 0.0106 10 1 0.5362 -2.3944 0.6034 11 7 2.2890 -3.5523 0.5947 12 6 1.0808 -2.8775 -1.4027 13 1 1.6699 -2.5071 -2.2286 14 6 -0.0041 -3.6941 -1.6414 15 7 -0.6920 -4.1850 -0.6336 16 14 -0.4969 -4.1035 -3.3960 17 1 -1.6868 -4.9919 -3.3817 18 1 -0.8239 -2.8508 -4.1235 19 1 0.6278 -4.7927 -4.0781 20 1 -0.3634 0.0046 1.0276 21 1 -0.3633 0.8877 -0.5179 22 1 -0.3633 -0.8922 -0.5099 23 1 4.1230 2.1325 -0.0106 24 1 5.3526 -0.0010 -0.0106 25 1 4.1204 -2.1324 0.0009 26 1 1.7730 -4.4127 0.7028 27 1 3.1208 -3.6966 0.0421 28 1 -0.3880 -4.0422 0.2763 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104684941.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:07 Heat of formation + Delta-G solvation = -16.491139 kcal Electronic energy + Delta-G solvation = -13352.418383 eV Core-core repulsion = 11006.488521 eV Total energy + Delta-G solvation = -2345.929862 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.062 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.61166 -37.61786 -36.64950 -33.74167 -33.49718 -30.85500 -27.96309 -27.44728 -24.88406 -22.54247 -21.66494 -19.05696 -17.84185 -17.01397 -16.07260 -16.04466 -15.69197 -15.24433 -14.53547 -14.32551 -14.18388 -13.94712 -13.34443 -13.19031 -12.94421 -12.66113 -12.32392 -12.16007 -12.01142 -11.80666 -11.49012 -11.33499 -10.70222 -9.66274 -9.49932 -9.21724 -8.57162 -6.41995 0.31192 0.46032 1.19057 1.51475 1.55734 1.76201 2.50439 2.79036 3.12887 3.85634 3.93839 4.13659 4.23216 4.42676 4.58763 4.67811 4.70331 4.78940 4.89024 5.20327 5.29262 5.35656 5.53539 5.74971 5.89339 6.00649 6.07259 6.52736 6.54737 6.81596 7.36194 8.71086 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.030405 B = 0.009248 C = 0.008102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.690601 B = 3026.922585 C = 3455.005068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.096 4.096 3 C -0.044 4.044 4 Cl -0.071 7.071 5 C -0.126 4.126 6 C -0.109 4.109 7 C -0.119 4.119 8 C -0.047 4.047 9 C 0.228 3.772 10 H 0.028 0.972 11 N -0.843 5.843 12 C -0.620 4.620 13 H 0.036 0.964 14 C -0.012 4.012 15 N -0.927 5.927 16 Si 1.105 2.895 17 H -0.284 1.284 18 H -0.278 1.278 19 H -0.272 1.272 20 H 0.066 0.934 21 H 0.075 0.925 22 H 0.057 0.943 23 H 0.156 0.844 24 H 0.161 0.839 25 H 0.130 0.870 26 H 0.327 0.673 27 H 0.330 0.670 28 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.212 9.230 0.244 11.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.098 4.098 3 C -0.070 4.070 4 Cl -0.042 7.042 5 C -0.145 4.145 6 C -0.127 4.127 7 C -0.137 4.137 8 C -0.048 4.048 9 C 0.118 3.882 10 H 0.046 0.954 11 N -0.370 5.370 12 C -0.660 4.660 13 H 0.055 0.945 14 C -0.213 4.213 15 N -0.563 5.563 16 Si 0.928 3.072 17 H -0.209 1.209 18 H -0.204 1.204 19 H -0.198 1.198 20 H 0.085 0.915 21 H 0.094 0.906 22 H 0.076 0.924 23 H 0.173 0.827 24 H 0.179 0.821 25 H 0.147 0.853 26 H 0.138 0.862 27 H 0.142 0.858 28 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 6.043 9.087 0.002 10.913 hybrid contribution 0.565 0.176 0.111 0.602 sum 6.608 9.262 0.113 11.379 Atomic orbital electron populations 1.20745 0.91182 1.02935 1.01898 1.19662 0.96832 0.91520 1.01742 1.20858 0.93059 0.85855 1.07272 1.98307 1.77392 1.31481 1.97043 1.21202 0.91118 1.00100 1.02072 1.21375 1.01263 0.90756 0.99336 1.21218 0.93261 0.99322 0.99942 1.20068 0.94625 0.94432 0.95670 1.17979 0.90795 0.86685 0.92730 0.95407 1.59537 1.10530 1.11489 1.55494 1.22623 1.17002 1.33054 0.93343 0.94521 1.26995 0.93027 0.93092 1.08162 1.70931 1.40321 1.44933 1.00161 0.83069 0.76502 0.76819 0.70836 1.20944 1.20357 1.19752 0.91486 0.90593 0.92396 0.82681 0.82105 0.85264 0.86236 0.85846 0.92760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.47 8.82 71.24 0.63 -3.84 15 2 C -0.10 -3.88 5.88 -19.84 -0.12 -4.00 15 3 C -0.04 -1.49 6.31 22.32 0.14 -1.35 15 4 Cl -0.07 -2.09 27.30 -2.72 -0.07 -2.16 15 5 C -0.13 -3.66 9.83 22.29 0.22 -3.44 15 6 C -0.11 -3.16 10.05 22.27 0.22 -2.94 15 7 C -0.12 -4.31 9.27 22.27 0.21 -4.10 15 8 C -0.05 -2.01 5.03 -19.87 -0.10 -2.11 15 9 C 0.23 10.99 1.89 43.42 0.08 11.07 15 10 H 0.03 1.51 5.84 -2.39 -0.01 1.49 15 11 N -0.84 -36.93 8.76 -174.95 -1.53 -38.46 15 12 C -0.62 -32.76 7.77 25.60 0.20 -32.56 15 13 H 0.04 1.99 7.81 -2.91 -0.02 1.97 15 14 C -0.01 -0.63 5.46 84.65 0.46 -0.17 15 15 N -0.93 -52.89 13.58 21.45 0.29 -52.59 15 16 Si 1.10 48.48 29.90 68.60 2.05 50.53 15 17 H -0.28 -12.53 7.11 99.48 0.71 -11.82 15 18 H -0.28 -11.72 7.11 99.48 0.71 -11.01 15 19 H -0.27 -11.19 7.11 99.48 0.71 -10.48 15 20 H 0.07 2.54 8.14 -2.39 -0.02 2.52 15 21 H 0.08 2.73 6.92 -2.38 -0.02 2.71 15 22 H 0.06 2.73 6.15 -2.39 -0.01 2.71 15 23 H 0.16 3.43 8.06 -2.91 -0.02 3.41 15 24 H 0.16 3.34 8.06 -2.91 -0.02 3.31 15 25 H 0.13 4.42 6.35 -2.91 -0.02 4.41 15 26 H 0.33 14.93 8.54 -89.69 -0.77 14.17 15 27 H 0.33 13.38 7.31 -89.70 -0.66 12.72 15 28 H 0.26 15.03 6.32 -92.71 -0.59 14.44 15 Total: -1.00 -58.22 250.66 2.64 -55.58 By element: Atomic # 1 Polarization: 30.60 SS G_CDS: -0.04 Total: 30.56 kcal Atomic # 6 Polarization: -45.39 SS G_CDS: 1.94 Total: -43.44 kcal Atomic # 7 Polarization: -89.82 SS G_CDS: -1.24 Total: -91.06 kcal Atomic # 14 Polarization: 48.48 SS G_CDS: 2.05 Total: 50.53 kcal Atomic # 17 Polarization: -2.09 SS G_CDS: -0.07 Total: -2.16 kcal Total: -58.22 2.64 -55.58 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104684941.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.084 kcal (2) G-P(sol) polarization free energy of solvation -58.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds