Wall clock time and date at job start Mon Mar 30 2020 02:45:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31044 * 1 3 3 Si 1.86798 * 119.99449 * 2 1 4 4 H 1.48500 * 109.47353 * 269.99698 * 3 2 1 5 5 H 1.48495 * 109.47568 * 30.00330 * 3 2 1 6 6 H 1.48498 * 109.47120 * 150.00198 * 3 2 1 7 7 C 1.39292 * 120.00273 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99674 * 179.97438 * 7 2 1 9 9 N 1.37159 * 119.99898 * 0.27593 * 7 2 1 10 10 N 1.28748 * 123.57676 * 359.42679 * 9 7 2 11 11 C 1.32352 * 108.86265 * 179.88477 * 10 9 7 12 12 C 1.40539 * 136.45566 * 180.02562 * 11 10 9 13 13 C 1.36064 * 119.51260 * 180.30630 * 12 11 10 14 14 F 1.35093 * 119.17393 * 180.02562 * 13 12 11 15 15 C 1.40030 * 121.65448 * 0.02562 * 13 12 11 16 16 F 1.35102 * 119.16878 * 179.97438 * 15 13 12 17 17 C 1.36061 * 121.65934 * 359.95889 * 15 13 12 18 18 C 1.40545 * 119.51224 * 0.03733 * 17 15 13 19 19 N 1.28747 * 123.57734 * 179.72293 * 9 7 2 20 20 H 0.96996 * 120.00551 * 359.97438 * 1 2 3 21 21 H 1.08001 * 120.24832 * 0.29220 * 12 11 10 22 22 H 1.08007 * 120.24357 * 180.02562 * 17 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3104 0.0000 0.0000 3 14 2.2443 1.6178 0.0000 4 1 2.4918 2.0465 -1.4001 5 1 1.4418 2.6527 0.7001 6 1 3.5419 1.4404 0.7000 7 6 2.0070 -1.2063 -0.0005 8 1 3.0870 -1.2062 -0.0010 9 7 1.3212 -2.3941 -0.0068 10 7 0.0363 -2.4745 -0.0016 11 6 -0.3126 -3.7512 -0.0126 12 6 -1.5151 -4.4786 -0.0147 13 6 -1.4757 -5.8387 -0.0218 14 9 -2.6357 -6.5311 -0.0242 15 6 -0.2630 -6.5387 -0.0266 16 9 -0.2824 -7.8896 -0.0330 17 6 0.9345 -5.8927 -0.0252 18 6 0.9631 -4.4876 -0.0181 19 7 1.8942 -3.5471 -0.0129 20 1 -0.4851 0.8400 0.0004 21 1 -2.4635 -3.9620 -0.0104 22 1 1.8563 -6.4556 -0.0294 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000107838951.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:42 Heat of formation + Delta-G solvation = 17.394470 kcal Electronic energy + Delta-G solvation = -14583.136836 eV Core-core repulsion = 11583.339340 eV Total energy + Delta-G solvation = -2999.797495 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 225.041 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -50.36022 -49.42175 -43.84873 -38.34030 -35.76269 -33.65081 -32.27292 -30.88457 -28.17145 -25.10096 -23.86791 -22.16876 -20.31790 -19.72428 -18.21947 -17.96967 -17.43647 -17.16443 -16.81985 -16.15778 -15.90561 -15.88429 -15.12037 -14.60475 -14.53776 -13.86840 -13.31872 -13.20680 -13.01940 -12.48075 -12.05119 -11.74709 -11.45165 -11.23553 -11.11959 -9.88656 -9.07135 -8.92998 -6.93205 -0.37175 0.37992 1.34645 1.36929 1.63221 1.83803 1.99840 2.52013 2.56697 2.75584 2.77069 3.17309 3.48602 3.81239 4.23483 4.38844 4.62015 4.76314 4.85121 4.97518 5.30605 5.58144 5.68759 5.86880 6.11033 6.80181 7.90146 8.05141 Molecular weight = 225.04amu Principal moments of inertia in cm(-1) A = 0.066367 B = 0.007236 C = 0.006540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 421.794307 B = 3868.426017 C = 4280.370878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.756 5.756 2 C 0.003 3.997 3 Si 1.042 2.958 4 H -0.254 1.254 5 H -0.261 1.261 6 H -0.240 1.240 7 C -0.282 4.282 8 H 0.162 0.838 9 N 0.103 4.897 10 N -0.336 5.336 11 C -0.034 4.034 12 C -0.082 4.082 13 C 0.048 3.952 14 F -0.136 7.136 15 C 0.056 3.944 16 F -0.134 7.134 17 C -0.087 4.087 18 C -0.008 4.008 19 N -0.421 5.421 20 H 0.302 0.698 21 H 0.152 0.848 22 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.156 0.058 -0.001 1.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.382 5.382 2 C -0.219 4.219 3 Si 0.856 3.144 4 H -0.178 1.178 5 H -0.185 1.185 6 H -0.163 1.163 7 C -0.430 4.430 8 H 0.179 0.821 9 N 0.221 4.779 10 N -0.186 5.186 11 C -0.173 4.173 12 C -0.105 4.105 13 C 0.024 3.976 14 F -0.115 7.115 15 C 0.033 3.967 16 F -0.113 7.113 17 C -0.110 4.110 18 C -0.147 4.147 19 N -0.271 5.271 20 H 0.114 0.886 21 H 0.170 0.830 22 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 1.407 0.909 0.011 1.675 hybrid contribution -0.655 -0.686 -0.023 0.949 sum 0.752 0.223 -0.012 0.784 Atomic orbital electron populations 1.70220 1.08940 1.32140 1.26861 1.27412 0.96791 1.04717 0.92941 0.84268 0.78383 0.71424 0.80288 1.17811 1.18536 1.16312 1.21614 0.95047 0.78312 1.48006 0.82084 1.44665 1.01408 1.05568 1.26253 1.75339 0.95781 1.16089 1.31412 1.21849 0.95743 0.90978 1.08720 1.19315 0.96552 0.90592 1.04057 1.16581 0.80404 0.89033 1.11571 1.91446 1.46096 1.79111 1.94823 1.16573 0.92457 0.76914 1.10792 1.91456 1.97301 1.27790 1.94734 1.19318 0.97543 0.89368 1.04779 1.21376 0.90610 0.95244 1.07500 1.74397 1.24639 0.91173 1.36849 0.88634 0.82994 0.82068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -35.99 11.68 21.70 0.25 -35.73 14 2 C 0.00 0.14 5.49 85.06 0.47 0.60 14 3 Si 1.04 30.54 29.55 68.60 2.03 32.57 14 4 H -0.25 -7.14 7.11 99.48 0.71 -6.43 14 5 H -0.26 -7.33 7.11 99.48 0.71 -6.62 14 6 H -0.24 -6.49 7.11 99.48 0.71 -5.79 14 7 C -0.28 -13.53 10.42 84.11 0.88 -12.66 14 8 H 0.16 6.78 7.84 -2.91 -0.02 6.76 14 9 N 0.10 5.59 4.01 -53.83 -0.22 5.38 14 10 N -0.34 -18.64 9.70 -48.82 -0.47 -19.11 14 11 C -0.03 -1.72 7.60 42.01 0.32 -1.40 14 12 C -0.08 -3.53 10.02 22.33 0.22 -3.30 14 13 C 0.05 1.91 7.22 22.20 0.16 2.07 14 14 F -0.14 -5.05 17.10 44.97 0.77 -4.28 14 15 C 0.06 2.21 7.22 22.20 0.16 2.37 14 16 F -0.13 -4.83 17.10 44.97 0.77 -4.06 14 17 C -0.09 -3.54 10.02 22.33 0.22 -3.32 14 18 C -0.01 -0.39 7.60 42.02 0.32 -0.07 14 19 N -0.42 -22.19 11.96 -48.82 -0.58 -22.77 14 20 H 0.30 12.56 8.30 -92.71 -0.77 11.79 14 21 H 0.15 5.92 8.06 -2.91 -0.02 5.89 14 22 H 0.16 5.61 8.06 -2.91 -0.02 5.59 14 Total: -1.00 -59.11 220.28 6.58 -52.53 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: 1.28 Total: 11.19 kcal Atomic # 6 Polarization: -18.46 SS G_CDS: 2.75 Total: -15.71 kcal Atomic # 7 Polarization: -71.22 SS G_CDS: -1.02 Total: -72.24 kcal Atomic # 9 Polarization: -9.88 SS G_CDS: 1.54 Total: -8.34 kcal Atomic # 14 Polarization: 30.54 SS G_CDS: 2.03 Total: 32.57 kcal Total: -59.11 6.58 -52.53 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107838951.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.922 kcal (2) G-P(sol) polarization free energy of solvation -59.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.527 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds