Wall clock time and date at job start Mon Mar 30 2020 02:49:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 119.99922 * 2 1 4 4 H 1.48505 * 109.47033 * 269.99737 * 3 2 1 5 5 H 1.48501 * 109.47244 * 29.99967 * 3 2 1 6 6 H 1.48503 * 109.47104 * 150.00334 * 3 2 1 7 7 C 1.37873 * 119.99982 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99619 * 359.97438 * 7 2 1 9 9 S 1.76191 * 120.00343 * 180.02562 * 7 2 1 10 10 N 1.49360 * 108.73228 * 62.46372 * 9 7 2 11 11 O 1.42104 * 108.33242 * 304.93568 * 9 7 2 12 12 C 1.81398 * 108.33545 * 179.97438 * 9 7 2 13 13 C 1.50706 * 109.46938 * 179.97438 * 12 9 7 14 14 C 1.38237 * 119.99744 * 90.00623 * 13 12 9 15 15 C 1.38235 * 119.99712 * 180.02562 * 14 13 12 16 16 C 1.38234 * 120.00220 * 359.94731 * 15 14 13 17 17 C 1.38233 * 120.00037 * 0.28719 * 16 15 14 18 18 C 1.38234 * 120.00223 * 270.01833 * 13 12 9 19 19 H 0.97003 * 120.00033 * 0.02562 * 1 2 3 20 20 H 0.96991 * 120.00171 * 62.46619 * 10 9 7 21 21 H 1.08998 * 109.47029 * 60.00411 * 12 9 7 22 22 H 1.08993 * 109.46994 * 300.00058 * 12 9 7 23 23 H 1.08005 * 120.00088 * 359.97438 * 14 13 12 24 24 H 1.07999 * 119.99770 * 179.97438 * 15 14 13 25 25 H 1.08002 * 119.99744 * 180.02562 * 16 15 14 26 26 H 1.07998 * 120.00395 * 179.72811 * 17 16 15 27 27 H 1.07998 * 119.99975 * 0.02562 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4644 -2.1293 -0.0005 9 16 3.7664 -1.1941 0.0001 10 7 4.2456 -0.5411 1.2550 11 8 4.2138 -0.4210 -1.1050 12 6 4.3369 -2.9161 0.0000 13 6 5.8437 -2.9460 -0.0001 14 6 6.5347 -2.9599 1.1971 15 6 7.9168 -2.9868 1.1970 16 6 8.6078 -3.0009 -0.0001 17 6 7.9169 -2.9820 -1.1972 18 6 6.5347 -2.9592 -1.1972 19 1 -0.4850 0.8401 -0.0004 20 1 4.0333 -0.9321 2.1168 21 1 3.9639 -3.4223 -0.8903 22 1 3.9631 -3.4227 0.8897 23 1 5.9948 -2.9490 2.1325 24 1 8.4567 -2.9973 2.1323 25 1 9.6877 -3.0223 -0.0001 26 1 8.4568 -2.9886 -2.1326 27 1 5.9949 -2.9477 -2.1325 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000107931382.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:36 Heat of formation + Delta-G solvation = 18.154974 kcal Electronic energy + Delta-G solvation = -13253.978438 eV Core-core repulsion = 10911.594650 eV Total energy + Delta-G solvation = -2342.383787 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.056 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -38.94665 -34.80325 -33.10529 -32.62523 -30.82851 -30.52332 -26.87763 -26.32272 -22.35351 -21.30259 -18.42572 -17.27242 -16.56216 -15.75721 -15.19587 -15.01887 -14.66931 -13.74601 -13.24531 -13.17349 -12.87293 -12.49873 -12.37618 -12.01590 -11.21575 -11.03243 -10.87976 -10.83002 -10.62227 -10.22295 -9.69295 -9.27185 -8.69983 -8.52829 -8.04972 -7.55171 -6.82301 -5.45010 1.23290 1.63159 1.85994 3.26423 3.37050 3.62639 4.03879 4.20947 4.55065 4.69569 4.92497 4.99056 5.17068 5.28412 5.30271 5.45748 5.71732 5.79738 5.91593 6.01561 6.25772 6.26308 6.65652 6.69433 6.82066 7.21003 7.38791 8.05041 8.47357 8.67608 10.25444 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.054155 B = 0.008794 C = 0.008633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 516.910818 B = 3183.152959 C = 3242.691604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.153 3.847 3 Si 0.808 3.192 4 H -0.258 1.258 5 H -0.277 1.277 6 H -0.174 1.174 7 C -0.988 4.988 8 H 0.116 0.884 9 S 2.395 3.605 10 N -1.271 6.271 11 O -0.955 6.955 12 C -0.587 4.587 13 C -0.055 4.055 14 C -0.105 4.105 15 C -0.120 4.120 16 C -0.129 4.129 17 C -0.119 4.119 18 C -0.114 4.114 19 H 0.282 0.718 20 H 0.367 0.633 21 H 0.119 0.881 22 H 0.124 0.876 23 H 0.125 0.875 24 H 0.121 0.879 25 H 0.119 0.881 26 H 0.121 0.879 27 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.622 -7.033 1.487 12.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.067 4.067 3 Si 0.628 3.372 4 H -0.183 1.183 5 H -0.202 1.202 6 H -0.095 1.095 7 C -1.127 5.127 8 H 0.134 0.866 9 S 2.577 3.423 10 N -1.081 6.081 11 O -0.943 6.943 12 C -0.713 4.713 13 C -0.056 4.056 14 C -0.124 4.124 15 C -0.138 4.138 16 C -0.147 4.147 17 C -0.137 4.137 18 C -0.133 4.133 19 H 0.092 0.908 20 H 0.186 0.814 21 H 0.137 0.863 22 H 0.143 0.857 23 H 0.143 0.857 24 H 0.139 0.861 25 H 0.137 0.863 26 H 0.139 0.861 27 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 11.244 -5.881 0.737 12.710 hybrid contribution -0.889 -0.503 0.362 1.083 sum 10.355 -6.383 1.099 12.214 Atomic orbital electron populations 1.70004 1.06940 1.29544 1.38615 1.24496 0.94685 0.99653 0.87876 0.87807 0.85214 0.81972 0.82164 1.18292 1.20246 1.09488 1.29936 1.12892 1.02021 1.67876 0.86559 1.09947 0.78518 0.73885 0.79993 1.72982 1.75642 1.44989 1.14480 1.93257 1.83465 1.62849 1.54768 1.29705 0.99850 1.31718 1.09994 1.19064 0.92635 1.00040 0.93878 1.21045 0.94386 0.99457 0.97467 1.21076 0.94130 1.00548 0.98005 1.21097 0.99574 1.01339 0.92713 1.21072 0.94042 1.00547 0.98086 1.21125 0.94579 0.99868 0.97695 0.90786 0.81426 0.86257 0.85717 0.85743 0.86083 0.86324 0.86082 0.85792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -23.41 13.96 55.43 0.77 -22.63 15 2 C 0.15 4.30 5.47 -17.82 -0.10 4.21 15 3 Si 0.81 21.04 25.94 -169.99 -4.41 16.63 15 4 H -0.26 -6.92 7.11 56.52 0.40 -6.52 15 5 H -0.28 -6.80 7.11 56.52 0.40 -6.40 15 6 H -0.17 -4.58 5.25 56.52 0.30 -4.28 15 7 C -0.99 -25.95 10.33 30.60 0.32 -25.63 15 8 H 0.12 3.03 8.06 -52.49 -0.42 2.61 15 9 S 2.40 55.22 3.61 -107.50 -0.39 54.83 15 10 N -1.27 -29.20 11.51 60.35 0.69 -28.51 15 11 O -0.96 -25.73 16.00 -35.23 -0.56 -26.29 15 12 C -0.59 -10.33 6.25 36.01 0.22 -10.10 15 13 C -0.06 -0.96 5.13 -104.62 -0.54 -1.50 15 14 C -0.10 -1.65 9.70 -39.58 -0.38 -2.03 15 15 C -0.12 -1.66 10.05 -39.58 -0.40 -2.06 15 16 C -0.13 -1.71 10.05 -39.58 -0.40 -2.11 15 17 C -0.12 -1.71 10.05 -39.58 -0.40 -2.11 15 18 C -0.11 -1.89 9.70 -39.58 -0.38 -2.27 15 19 H 0.28 7.37 8.31 -40.82 -0.34 7.03 15 20 H 0.37 7.27 8.92 -21.58 -0.19 7.08 15 21 H 0.12 1.91 8.08 -51.92 -0.42 1.49 15 22 H 0.12 1.86 8.09 -51.93 -0.42 1.44 15 23 H 0.12 1.73 8.06 -52.48 -0.42 1.31 15 24 H 0.12 1.33 8.06 -52.49 -0.42 0.91 15 25 H 0.12 1.22 8.06 -52.49 -0.42 0.80 15 26 H 0.12 1.39 8.06 -52.49 -0.42 0.97 15 27 H 0.12 1.92 8.06 -52.49 -0.42 1.50 15 LS Contribution 248.93 15.07 3.75 3.75 Total: -1.00 -32.90 248.93 -5.00 -37.90 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: -2.81 Total: 7.92 kcal Atomic # 6 Polarization: -41.56 SS G_CDS: -2.05 Total: -43.61 kcal Atomic # 7 Polarization: -52.61 SS G_CDS: 1.47 Total: -51.14 kcal Atomic # 8 Polarization: -25.73 SS G_CDS: -0.56 Total: -26.29 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -4.41 Total: 16.63 kcal Atomic # 16 Polarization: 55.22 SS G_CDS: -0.39 Total: 54.83 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -32.90 -5.00 -37.90 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107931382.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.059 kcal (2) G-P(sol) polarization free energy of solvation -32.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.904 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds