Wall clock time and date at job start Mon Mar 30 2020 02:49:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 119.99922 * 2 1 4 4 H 1.48505 * 109.47033 * 269.99737 * 3 2 1 5 5 H 1.48501 * 109.47244 * 29.99967 * 3 2 1 6 6 H 1.48503 * 109.47104 * 150.00334 * 3 2 1 7 7 C 1.37873 * 119.99982 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99619 * 359.97438 * 7 2 1 9 9 S 1.76191 * 120.00343 * 180.02562 * 7 2 1 10 10 N 1.49360 * 108.73228 * 62.46372 * 9 7 2 11 11 O 1.42104 * 108.33242 * 304.93568 * 9 7 2 12 12 C 1.81398 * 108.33545 * 179.97438 * 9 7 2 13 13 C 1.50706 * 109.46938 * 179.97438 * 12 9 7 14 14 C 1.38237 * 119.99744 * 90.00623 * 13 12 9 15 15 C 1.38235 * 119.99712 * 180.02562 * 14 13 12 16 16 C 1.38234 * 120.00220 * 359.94731 * 15 14 13 17 17 C 1.38233 * 120.00037 * 0.28719 * 16 15 14 18 18 C 1.38234 * 120.00223 * 270.01833 * 13 12 9 19 19 H 0.97003 * 120.00033 * 0.02562 * 1 2 3 20 20 H 0.96991 * 120.00171 * 62.46619 * 10 9 7 21 21 H 1.08998 * 109.47029 * 60.00411 * 12 9 7 22 22 H 1.08993 * 109.46994 * 300.00058 * 12 9 7 23 23 H 1.08005 * 120.00088 * 359.97438 * 14 13 12 24 24 H 1.07999 * 119.99770 * 179.97438 * 15 14 13 25 25 H 1.08002 * 119.99744 * 180.02562 * 16 15 14 26 26 H 1.07998 * 120.00395 * 179.72811 * 17 16 15 27 27 H 1.07998 * 119.99975 * 0.02562 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4644 -2.1293 -0.0005 9 16 3.7664 -1.1941 0.0001 10 7 4.2456 -0.5411 1.2550 11 8 4.2138 -0.4210 -1.1050 12 6 4.3369 -2.9161 0.0000 13 6 5.8437 -2.9460 -0.0001 14 6 6.5347 -2.9599 1.1971 15 6 7.9168 -2.9868 1.1970 16 6 8.6078 -3.0009 -0.0001 17 6 7.9169 -2.9820 -1.1972 18 6 6.5347 -2.9592 -1.1972 19 1 -0.4850 0.8401 -0.0004 20 1 4.0333 -0.9321 2.1168 21 1 3.9639 -3.4223 -0.8903 22 1 3.9631 -3.4227 0.8897 23 1 5.9948 -2.9490 2.1325 24 1 8.4567 -2.9973 2.1323 25 1 9.6877 -3.0223 -0.0001 26 1 8.4568 -2.9886 -2.1326 27 1 5.9949 -2.9477 -2.1325 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000107931382.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:36 Heat of formation + Delta-G solvation = -6.200245 kcal Electronic energy + Delta-G solvation = -13255.034559 eV Core-core repulsion = 10911.594650 eV Total energy + Delta-G solvation = -2343.439909 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.056 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.06802 -36.78404 -35.19306 -33.88580 -32.47976 -31.73581 -28.49956 -28.05635 -23.46353 -22.50812 -20.38770 -19.13003 -17.80985 -17.58957 -16.82369 -16.24330 -15.99834 -15.55190 -14.89858 -14.78814 -14.27514 -13.99775 -13.65639 -13.45604 -13.23146 -12.97569 -12.56121 -12.20180 -12.06312 -11.87200 -11.58703 -11.36991 -10.07471 -9.81770 -9.71919 -9.19280 -8.94209 -7.52779 -0.40551 0.51848 0.58619 1.18695 1.26495 1.54568 2.12868 2.45108 2.90193 3.11616 3.29229 3.59403 3.82560 4.04548 4.17831 4.31258 4.36506 4.60513 4.65534 4.74844 5.10580 5.17401 5.34305 5.56278 5.61643 5.63932 5.97554 6.12666 6.57705 6.90739 8.18278 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.054155 B = 0.008794 C = 0.008633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 516.910818 B = 3183.152959 C = 3242.691604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.857 5.857 2 C 0.117 3.883 3 Si 0.833 3.167 4 H -0.276 1.276 5 H -0.257 1.257 6 H -0.175 1.175 7 C -1.009 5.009 8 H 0.108 0.892 9 S 2.409 3.591 10 N -1.294 6.294 11 O -0.997 6.997 12 C -0.556 4.556 13 C -0.090 4.090 14 C -0.117 4.117 15 C -0.125 4.125 16 C -0.123 4.123 17 C -0.128 4.128 18 C -0.138 4.138 19 H 0.288 0.712 20 H 0.379 0.621 21 H 0.136 0.864 22 H 0.156 0.844 23 H 0.138 0.862 24 H 0.152 0.848 25 H 0.154 0.846 26 H 0.147 0.853 27 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.964 -8.138 2.223 15.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.487 5.487 2 C -0.100 4.100 3 Si 0.653 3.347 4 H -0.201 1.201 5 H -0.181 1.181 6 H -0.096 1.096 7 C -1.146 5.146 8 H 0.126 0.874 9 S 2.595 3.405 10 N -1.106 6.106 11 O -0.986 6.986 12 C -0.689 4.689 13 C -0.091 4.091 14 C -0.136 4.136 15 C -0.142 4.142 16 C -0.141 4.141 17 C -0.145 4.145 18 C -0.157 4.157 19 H 0.099 0.901 20 H 0.200 0.800 21 H 0.154 0.846 22 H 0.174 0.826 23 H 0.156 0.844 24 H 0.170 0.830 25 H 0.172 0.828 26 H 0.165 0.835 27 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 13.511 -6.911 1.500 15.250 hybrid contribution -1.432 -0.355 0.115 1.480 sum 12.079 -7.266 1.615 14.188 Atomic orbital electron populations 1.70032 1.07696 1.30415 1.40514 1.25076 0.95180 1.01648 0.88124 0.87432 0.84976 0.81054 0.81193 1.20137 1.18145 1.09585 1.30643 1.16424 1.01236 1.66248 0.87389 1.09058 0.76343 0.76012 0.79079 1.72935 1.73624 1.48837 1.15185 1.93208 1.83218 1.65998 1.56188 1.29313 1.00882 1.26059 1.12624 1.19174 0.92012 1.02841 0.95076 1.21369 0.95624 0.99207 0.97430 1.21523 0.93624 0.99346 0.99732 1.21592 1.01471 0.99002 0.92039 1.21460 0.93348 0.99783 0.99938 1.21393 0.96025 1.00681 0.97616 0.90147 0.79973 0.84598 0.82583 0.84407 0.83027 0.82827 0.83544 0.85878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -49.49 13.96 21.45 0.30 -49.19 15 2 C 0.12 6.62 5.47 84.65 0.46 7.08 15 3 Si 0.83 43.37 25.94 68.60 1.78 45.15 15 4 H -0.28 -14.96 7.11 99.48 0.71 -14.26 15 5 H -0.26 -12.31 7.11 99.48 0.71 -11.61 15 6 H -0.18 -9.15 5.25 99.48 0.52 -8.63 15 7 C -1.01 -53.43 10.33 67.73 0.70 -52.73 15 8 H 0.11 5.70 8.06 -2.91 -0.02 5.68 15 9 S 2.41 109.62 3.61 -56.49 -0.20 109.42 15 10 N -1.29 -58.25 11.51 37.02 0.43 -57.82 15 11 O -1.00 -53.89 16.00 -148.98 -2.38 -56.28 15 12 C -0.56 -18.42 6.25 71.24 0.44 -17.97 15 13 C -0.09 -2.92 5.13 -19.86 -0.10 -3.02 15 14 C -0.12 -3.34 9.70 22.27 0.22 -3.12 15 15 C -0.12 -2.97 10.05 22.27 0.22 -2.74 15 16 C -0.12 -2.76 10.05 22.27 0.22 -2.53 15 17 C -0.13 -3.26 10.05 22.27 0.22 -3.03 15 18 C -0.14 -4.31 9.70 22.27 0.22 -4.10 15 19 H 0.29 15.31 8.31 -92.71 -0.77 14.54 15 20 H 0.38 14.59 8.92 -104.95 -0.94 13.65 15 21 H 0.14 4.06 8.08 -2.39 -0.02 4.04 15 22 H 0.16 4.17 8.09 -2.39 -0.02 4.15 15 23 H 0.14 3.41 8.06 -2.91 -0.02 3.39 15 24 H 0.15 2.61 8.06 -2.91 -0.02 2.58 15 25 H 0.15 2.34 8.06 -2.91 -0.02 2.31 15 26 H 0.15 2.86 8.06 -2.91 -0.02 2.84 15 27 H 0.12 3.70 8.06 -2.91 -0.02 3.68 15 Total: -1.00 -71.09 248.93 2.58 -68.51 By element: Atomic # 1 Polarization: 22.33 SS G_CDS: 0.05 Total: 22.38 kcal Atomic # 6 Polarization: -84.78 SS G_CDS: 2.61 Total: -82.17 kcal Atomic # 7 Polarization: -107.74 SS G_CDS: 0.73 Total: -107.01 kcal Atomic # 8 Polarization: -53.89 SS G_CDS: -2.38 Total: -56.28 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 1.78 Total: 45.15 kcal Atomic # 16 Polarization: 109.62 SS G_CDS: -0.20 Total: 109.42 kcal Total: -71.09 2.58 -68.51 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107931382.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.312 kcal (2) G-P(sol) polarization free energy of solvation -71.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds