Wall clock time and date at job start Mon Mar 30 2020 02:49:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86805 * 119.99988 * 2 1 4 4 H 1.48500 * 109.46916 * 239.99631 * 3 2 1 5 5 H 1.48493 * 109.47211 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.46935 * 119.99662 * 3 2 1 7 7 C 1.37873 * 119.99802 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99619 * 179.97438 * 7 2 1 9 9 S 1.76191 * 120.00343 * 0.02562 * 7 2 1 10 10 N 1.49359 * 108.73362 * 297.53161 * 9 7 2 11 11 O 1.42106 * 108.33326 * 55.05758 * 9 7 2 12 12 C 1.81398 * 108.33545 * 179.97438 * 9 7 2 13 13 C 1.50706 * 109.46938 * 179.97438 * 12 9 7 14 14 C 1.38237 * 119.99744 * 90.00623 * 13 12 9 15 15 C 1.38235 * 119.99712 * 180.02562 * 14 13 12 16 16 C 1.38234 * 120.00220 * 359.94731 * 15 14 13 17 17 C 1.38233 * 120.00037 * 0.28719 * 16 15 14 18 18 C 1.38234 * 120.00223 * 270.01833 * 13 12 9 19 19 H 0.97003 * 119.99756 * 0.02562 * 1 2 3 20 20 H 0.97002 * 119.99158 * 297.53338 * 10 9 7 21 21 H 1.08998 * 109.47029 * 60.00411 * 12 9 7 22 22 H 1.08993 * 109.46994 * 300.00058 * 12 9 7 23 23 H 1.08005 * 120.00088 * 359.97438 * 14 13 12 24 24 H 1.07999 * 119.99770 * 179.97438 * 15 14 13 25 25 H 1.08002 * 119.99744 * 180.02562 * 16 15 14 26 26 H 1.07998 * 120.00395 * 179.72811 * 17 16 15 27 27 H 1.07998 * 119.99975 * 0.02562 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1028 1.6964 1.2126 7 6 2.0044 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 16 1.1235 -2.7199 0.0005 10 7 0.3170 -2.8082 1.2545 11 8 0.2314 -2.7210 -1.1056 12 6 2.3294 -4.0750 0.0005 13 6 1.6019 -5.3949 0.0012 14 6 1.2680 -6.0005 -1.1957 15 6 0.6002 -7.2109 -1.1952 16 6 0.2673 -7.8161 0.0023 17 6 0.5969 -7.2081 1.1991 18 6 1.2683 -5.9997 1.1986 19 1 -0.4850 0.8401 -0.0004 20 1 0.7610 -2.8197 2.1169 21 1 2.9548 -4.0049 0.8905 22 1 2.9548 -4.0048 -0.8894 23 1 1.5281 -5.5277 -2.1313 24 1 0.3390 -7.6839 -2.1302 25 1 -0.2541 -8.7619 0.0026 26 1 0.3330 -7.6787 2.1347 27 1 1.5287 -5.5262 2.1337 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000107931384.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:39 Heat of formation + Delta-G solvation = 5.507483 kcal Electronic energy + Delta-G solvation = -13168.214152 eV Core-core repulsion = 10825.281928 eV Total energy + Delta-G solvation = -2342.932224 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.056 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -38.81653 -34.23870 -33.14693 -32.44203 -30.60624 -30.11573 -26.73668 -26.01119 -22.23298 -21.14924 -18.43295 -16.83430 -16.45204 -15.44872 -15.01088 -14.88342 -14.47140 -13.92992 -13.20884 -13.04882 -12.78791 -12.21523 -11.93187 -11.68465 -11.25188 -11.11368 -10.85196 -10.69294 -10.60202 -10.10104 -9.56463 -9.19147 -8.59035 -8.43404 -7.85426 -7.44700 -6.57321 -5.35476 1.46705 1.74626 2.07759 3.05247 3.11161 3.14982 4.03390 4.16401 4.61945 4.92910 5.08536 5.27659 5.40803 5.42858 5.60589 5.78320 5.86883 5.92680 6.09188 6.33534 6.39371 6.46197 6.77627 6.80341 6.96337 7.25197 7.33360 7.85904 8.76402 8.91094 10.25882 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.064708 B = 0.007641 C = 0.007589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 432.605948 B = 3663.619181 C = 3688.707450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.804 5.804 2 C 0.132 3.868 3 Si 0.915 3.085 4 H -0.265 1.265 5 H -0.276 1.276 6 H -0.264 1.264 7 C -0.997 4.997 8 H 0.097 0.903 9 S 2.430 3.570 10 N -1.250 6.250 11 O -0.943 6.943 12 C -0.612 4.612 13 C -0.048 4.048 14 C -0.116 4.116 15 C -0.119 4.119 16 C -0.132 4.132 17 C -0.119 4.119 18 C -0.108 4.108 19 H 0.288 0.712 20 H 0.357 0.643 21 H 0.117 0.883 22 H 0.113 0.887 23 H 0.123 0.877 24 H 0.120 0.880 25 H 0.118 0.882 26 H 0.120 0.880 27 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.256 -8.813 1.239 10.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.430 5.430 2 C -0.090 4.090 3 Si 0.739 3.261 4 H -0.189 1.189 5 H -0.201 1.201 6 H -0.189 1.189 7 C -1.135 5.135 8 H 0.116 0.884 9 S 2.605 3.395 10 N -1.058 6.058 11 O -0.931 6.931 12 C -0.734 4.734 13 C -0.049 4.049 14 C -0.135 4.135 15 C -0.137 4.137 16 C -0.151 4.151 17 C -0.137 4.137 18 C -0.127 4.127 19 H 0.098 0.902 20 H 0.175 0.825 21 H 0.136 0.864 22 H 0.131 0.869 23 H 0.141 0.859 24 H 0.138 0.862 25 H 0.136 0.864 26 H 0.138 0.862 27 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 3.723 -8.905 0.467 9.663 hybrid contribution 1.904 0.992 0.490 2.202 sum 5.628 -7.913 0.957 9.757 Atomic orbital electron populations 1.70095 1.06377 1.30078 1.36469 1.24750 0.94526 1.00212 0.89481 0.86289 0.79946 0.80113 0.79760 1.18940 1.20057 1.18894 1.30048 1.04818 1.09785 1.68891 0.88424 1.09471 0.73014 0.77197 0.79776 1.72722 1.35954 1.83326 1.13844 1.93255 1.58086 1.87070 1.54695 1.30127 1.18769 1.15400 1.09084 1.19085 0.97923 0.94172 0.93723 1.21108 0.99178 0.95525 0.97716 1.21055 0.98963 0.95702 0.98007 1.21062 1.01136 1.00141 0.92729 1.21060 0.98957 0.95772 0.97939 1.21028 0.98854 0.95281 0.97487 0.90205 0.82538 0.86409 0.86877 0.85925 0.86191 0.86425 0.86191 0.85893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -23.21 12.93 55.43 0.72 -22.49 15 2 C 0.13 3.53 5.46 -17.82 -0.10 3.43 15 3 Si 0.92 19.74 29.54 -169.99 -5.02 14.72 15 4 H -0.26 -5.56 7.11 56.52 0.40 -5.16 15 5 H -0.28 -5.76 7.11 56.52 0.40 -5.36 15 6 H -0.26 -5.46 7.11 56.52 0.40 -5.06 15 7 C -1.00 -25.80 9.78 30.60 0.30 -25.50 15 8 H 0.10 2.26 7.81 -52.49 -0.41 1.85 15 9 S 2.43 60.66 3.95 -107.50 -0.42 60.23 15 10 N -1.25 -32.09 13.98 60.35 0.84 -31.24 15 11 O -0.94 -28.25 17.77 -35.23 -0.63 -28.88 15 12 C -0.61 -11.59 6.25 36.01 0.22 -11.37 15 13 C -0.05 -0.91 5.13 -104.62 -0.54 -1.44 15 14 C -0.12 -2.10 9.70 -39.58 -0.38 -2.48 15 15 C -0.12 -1.85 10.05 -39.58 -0.40 -2.25 15 16 C -0.13 -1.91 10.05 -39.58 -0.40 -2.31 15 17 C -0.12 -1.80 10.05 -39.58 -0.40 -2.20 15 18 C -0.11 -1.85 9.70 -39.58 -0.38 -2.23 15 19 H 0.29 7.56 8.31 -40.82 -0.34 7.22 15 20 H 0.36 7.99 8.92 -21.58 -0.19 7.80 15 21 H 0.12 1.89 8.08 -51.92 -0.42 1.47 15 22 H 0.11 1.93 8.09 -51.93 -0.42 1.51 15 23 H 0.12 2.07 8.06 -52.48 -0.42 1.65 15 24 H 0.12 1.50 8.06 -52.49 -0.42 1.08 15 25 H 0.12 1.33 8.06 -52.49 -0.42 0.91 15 26 H 0.12 1.45 8.06 -52.49 -0.42 1.03 15 27 H 0.12 1.89 8.06 -52.49 -0.42 1.47 15 LS Contribution 257.14 15.07 3.88 3.88 Total: -1.00 -34.33 257.14 -5.40 -39.73 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: -2.69 Total: 10.41 kcal Atomic # 6 Polarization: -44.28 SS G_CDS: -2.07 Total: -46.35 kcal Atomic # 7 Polarization: -55.30 SS G_CDS: 1.56 Total: -53.74 kcal Atomic # 8 Polarization: -28.25 SS G_CDS: -0.63 Total: -28.88 kcal Atomic # 14 Polarization: 19.74 SS G_CDS: -5.02 Total: 14.72 kcal Atomic # 16 Polarization: 60.66 SS G_CDS: -0.42 Total: 60.23 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -34.33 -5.40 -39.73 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107931384.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.235 kcal (2) G-P(sol) polarization free energy of solvation -34.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.728 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds