Wall clock time and date at job start Mon Mar 30 2020 02:49:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86805 * 119.99988 * 2 1 4 4 H 1.48500 * 109.46916 * 239.99631 * 3 2 1 5 5 H 1.48493 * 109.47211 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.46935 * 119.99662 * 3 2 1 7 7 C 1.37873 * 119.99802 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99619 * 179.97438 * 7 2 1 9 9 S 1.76191 * 120.00343 * 0.02562 * 7 2 1 10 10 N 1.49359 * 108.73362 * 297.53161 * 9 7 2 11 11 O 1.42106 * 108.33326 * 55.05758 * 9 7 2 12 12 C 1.81398 * 108.33545 * 179.97438 * 9 7 2 13 13 C 1.50706 * 109.46938 * 179.97438 * 12 9 7 14 14 C 1.38237 * 119.99744 * 90.00623 * 13 12 9 15 15 C 1.38235 * 119.99712 * 180.02562 * 14 13 12 16 16 C 1.38234 * 120.00220 * 359.94731 * 15 14 13 17 17 C 1.38233 * 120.00037 * 0.28719 * 16 15 14 18 18 C 1.38234 * 120.00223 * 270.01833 * 13 12 9 19 19 H 0.97003 * 119.99756 * 0.02562 * 1 2 3 20 20 H 0.97002 * 119.99158 * 297.53338 * 10 9 7 21 21 H 1.08998 * 109.47029 * 60.00411 * 12 9 7 22 22 H 1.08993 * 109.46994 * 300.00058 * 12 9 7 23 23 H 1.08005 * 120.00088 * 359.97438 * 14 13 12 24 24 H 1.07999 * 119.99770 * 179.97438 * 15 14 13 25 25 H 1.08002 * 119.99744 * 180.02562 * 16 15 14 26 26 H 1.07998 * 120.00395 * 179.72811 * 17 16 15 27 27 H 1.07998 * 119.99975 * 0.02562 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1028 1.6964 1.2126 7 6 2.0044 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 16 1.1235 -2.7199 0.0005 10 7 0.3170 -2.8082 1.2545 11 8 0.2314 -2.7210 -1.1056 12 6 2.3294 -4.0750 0.0005 13 6 1.6019 -5.3949 0.0012 14 6 1.2680 -6.0005 -1.1957 15 6 0.6002 -7.2109 -1.1952 16 6 0.2673 -7.8161 0.0023 17 6 0.5969 -7.2081 1.1991 18 6 1.2683 -5.9997 1.1986 19 1 -0.4850 0.8401 -0.0004 20 1 0.7610 -2.8197 2.1169 21 1 2.9548 -4.0049 0.8905 22 1 2.9548 -4.0048 -0.8894 23 1 1.5281 -5.5277 -2.1313 24 1 0.3390 -7.6839 -2.1302 25 1 -0.2541 -8.7619 0.0026 26 1 0.3330 -7.6787 2.1347 27 1 1.5287 -5.5262 2.1337 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000107931384.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:38 Heat of formation + Delta-G solvation = -20.192367 kcal Electronic energy + Delta-G solvation = -13169.328581 eV Core-core repulsion = 10825.281928 eV Total energy + Delta-G solvation = -2344.046653 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.056 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.05799 -36.36716 -35.13952 -33.81807 -32.14202 -31.71220 -28.36563 -27.82452 -23.46837 -22.47006 -20.37052 -18.80326 -17.72293 -17.33156 -16.64561 -16.20286 -15.99245 -15.65779 -14.97401 -14.28642 -14.16087 -13.64078 -13.52350 -13.39182 -13.07223 -12.94676 -12.31576 -12.17576 -12.09347 -11.87347 -11.43073 -11.12136 -10.10228 -9.82067 -9.63168 -9.18636 -8.52726 -7.41282 -0.20323 0.50661 0.62652 1.36934 1.38182 1.50564 2.23195 2.64661 2.90786 3.39949 3.64493 3.81177 4.04080 4.12865 4.17090 4.30353 4.53110 4.62050 4.66107 4.75534 5.11532 5.16270 5.28350 5.55509 5.60005 5.65168 5.90567 6.12724 6.82336 7.10810 8.30005 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.064708 B = 0.007641 C = 0.007589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 432.605948 B = 3663.619181 C = 3688.707450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.072 3.928 3 Si 0.983 3.017 4 H -0.254 1.254 5 H -0.271 1.271 6 H -0.246 1.246 7 C -1.018 5.018 8 H 0.121 0.879 9 S 2.431 3.569 10 N -1.295 6.295 11 O -1.006 7.006 12 C -0.581 4.581 13 C -0.085 4.085 14 C -0.143 4.143 15 C -0.127 4.127 16 C -0.126 4.126 17 C -0.124 4.124 18 C -0.123 4.123 19 H 0.290 0.710 20 H 0.367 0.633 21 H 0.150 0.850 22 H 0.132 0.868 23 H 0.121 0.879 24 H 0.148 0.852 25 H 0.156 0.844 26 H 0.152 0.848 27 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.743 -9.998 1.762 12.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.486 5.486 2 C -0.144 4.144 3 Si 0.801 3.199 4 H -0.178 1.178 5 H -0.195 1.195 6 H -0.169 1.169 7 C -1.156 5.156 8 H 0.139 0.861 9 S 2.615 3.385 10 N -1.105 6.105 11 O -0.995 6.995 12 C -0.710 4.710 13 C -0.086 4.086 14 C -0.162 4.162 15 C -0.144 4.144 16 C -0.144 4.144 17 C -0.142 4.142 18 C -0.142 4.142 19 H 0.100 0.900 20 H 0.186 0.814 21 H 0.168 0.832 22 H 0.150 0.850 23 H 0.139 0.861 24 H 0.166 0.834 25 H 0.174 0.826 26 H 0.170 0.830 27 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 5.176 -10.036 1.010 11.337 hybrid contribution 1.506 1.117 0.316 1.901 sum 6.682 -8.919 1.326 11.223 Atomic orbital electron populations 1.70236 1.08554 1.31210 1.38577 1.25951 0.95245 1.04668 0.88491 0.85274 0.78760 0.75075 0.80763 1.17797 1.19541 1.16942 1.30547 1.06221 1.10805 1.68021 0.86077 1.08554 0.73748 0.77913 0.78321 1.72658 1.38935 1.84300 1.14567 1.93182 1.61565 1.88345 1.56432 1.29676 1.16981 1.12577 1.11790 1.19237 0.99988 0.94440 0.94945 1.21381 1.00321 0.96966 0.97564 1.21465 0.98065 0.94916 0.99983 1.21577 0.99733 1.01150 0.91958 1.21525 0.97817 0.95038 0.99802 1.21343 0.99175 0.96321 0.97370 0.90007 0.81404 0.83182 0.85012 0.86132 0.83437 0.82649 0.82994 0.84804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -51.04 12.93 21.45 0.28 -50.76 15 2 C 0.07 3.90 5.46 84.65 0.46 4.36 15 3 Si 0.98 39.90 29.54 68.60 2.03 41.92 15 4 H -0.25 -9.78 7.11 99.48 0.71 -9.07 15 5 H -0.27 -10.64 7.11 99.48 0.71 -9.94 15 6 H -0.25 -9.17 7.11 99.48 0.71 -8.47 15 7 C -1.02 -52.71 9.78 67.73 0.66 -52.05 15 8 H 0.12 5.44 7.81 -2.91 -0.02 5.41 15 9 S 2.43 123.30 3.95 -56.49 -0.22 123.07 15 10 N -1.30 -68.13 13.98 37.02 0.52 -67.61 15 11 O -1.01 -62.70 17.77 -148.98 -2.65 -65.35 15 12 C -0.58 -21.34 6.25 71.24 0.44 -20.89 15 13 C -0.08 -3.12 5.13 -19.86 -0.10 -3.22 15 14 C -0.14 -5.04 9.70 22.27 0.22 -4.82 15 15 C -0.13 -3.65 10.05 22.27 0.22 -3.42 15 16 C -0.13 -3.22 10.05 22.27 0.22 -3.00 15 17 C -0.12 -3.39 10.05 22.27 0.22 -3.16 15 18 C -0.12 -4.01 9.70 22.27 0.22 -3.80 15 19 H 0.29 15.82 8.31 -92.71 -0.77 15.05 15 20 H 0.37 16.77 8.92 -104.94 -0.94 15.83 15 21 H 0.15 4.48 8.08 -2.39 -0.02 4.46 15 22 H 0.13 4.31 8.09 -2.39 -0.02 4.29 15 23 H 0.12 4.10 8.06 -2.91 -0.02 4.08 15 24 H 0.15 3.29 8.06 -2.91 -0.02 3.27 15 25 H 0.16 2.76 8.06 -2.91 -0.02 2.73 15 26 H 0.15 3.08 8.06 -2.91 -0.02 3.06 15 27 H 0.13 3.90 8.06 -2.91 -0.02 3.88 15 Total: -1.00 -76.90 257.14 2.76 -74.14 By element: Atomic # 1 Polarization: 34.35 SS G_CDS: 0.24 Total: 34.59 kcal Atomic # 6 Polarization: -92.58 SS G_CDS: 2.57 Total: -90.00 kcal Atomic # 7 Polarization: -119.17 SS G_CDS: 0.79 Total: -118.37 kcal Atomic # 8 Polarization: -62.70 SS G_CDS: -2.65 Total: -65.35 kcal Atomic # 14 Polarization: 39.90 SS G_CDS: 2.03 Total: 41.92 kcal Atomic # 16 Polarization: 123.30 SS G_CDS: -0.22 Total: 123.07 kcal Total: -76.90 2.76 -74.14 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107931384.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.947 kcal (2) G-P(sol) polarization free energy of solvation -76.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds