Wall clock time and date at job start Mon Mar 30 2020 02:45:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38442 * 119.43549 * 2 1 4 4 C 1.38276 * 119.35907 * 179.79466 * 3 2 1 5 5 C 1.40149 * 118.30023 * 0.46456 * 4 3 2 6 6 C 1.47747 * 120.58256 * 179.72970 * 5 4 3 7 7 O 1.21769 * 120.00186 * 180.02562 * 6 5 4 8 8 C 1.41837 * 119.99851 * 0.02777 * 6 5 4 9 9 H 1.07997 * 120.00027 * 353.29770 * 8 6 5 10 10 C 1.40334 * 119.99923 * 173.29824 * 8 6 5 11 11 N 1.30533 * 119.99958 * 6.11934 * 10 8 6 12 12 Si 1.86805 * 120.00207 * 186.12427 * 10 8 6 13 13 H 1.48494 * 109.47208 * 94.98429 * 12 10 8 14 14 H 1.48503 * 109.46911 * 214.98649 * 12 10 8 15 15 H 1.48505 * 109.46701 * 334.98219 * 12 10 8 16 16 C 1.39916 * 118.83572 * 359.75739 * 5 4 3 17 17 Cl 1.73600 * 119.74670 * 179.97438 * 16 5 4 18 18 N 1.31790 * 120.50265 * 0.02562 * 16 5 4 19 19 H 1.09000 * 109.47514 * 269.73134 * 1 2 3 20 20 H 1.09005 * 109.47220 * 29.73339 * 1 2 3 21 21 H 1.09002 * 109.47557 * 149.72993 * 1 2 3 22 22 H 1.07996 * 120.32069 * 359.97438 * 3 2 1 23 23 H 1.08008 * 120.84889 * 180.22116 * 4 3 2 24 24 H 0.97001 * 120.00304 * 179.97438 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1873 1.2057 0.0000 4 6 3.5700 1.2039 0.0043 5 6 4.2329 -0.0310 -0.0014 6 6 5.7091 -0.0917 -0.0032 7 8 6.2741 -1.1704 -0.0087 8 6 6.4682 1.1064 0.0015 9 1 5.9724 2.0602 -0.1027 10 6 7.8634 1.0525 0.1417 11 7 8.4747 -0.1009 0.1477 12 14 8.8460 2.6312 0.3200 13 1 9.0672 2.9166 1.7603 14 1 10.1566 2.4781 -0.3614 15 1 8.0952 3.7538 -0.2976 16 6 3.4721 -1.2052 -0.0061 17 17 4.2687 -2.7476 -0.0139 18 7 2.1554 -1.1492 -0.0056 19 1 -0.3634 -0.0048 1.0276 20 1 -0.3634 0.8924 -0.5097 21 1 -0.3634 -0.8875 -0.5180 22 1 1.6433 2.1387 -0.0004 23 1 4.1251 2.1304 0.0080 24 1 9.4392 -0.1382 0.2442 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000114903231.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:10 Heat of formation + Delta-G solvation = -36.313757 kcal Electronic energy + Delta-G solvation = -12812.655771 eV Core-core repulsion = 10330.033242 eV Total energy + Delta-G solvation = -2482.622530 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 225.030 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.17999 -38.53405 -37.36531 -34.77450 -33.88662 -33.07298 -29.50576 -28.16516 -24.54410 -23.68448 -21.83924 -18.63522 -18.00405 -17.37473 -16.91080 -15.95753 -15.80266 -14.92161 -14.75306 -14.32330 -14.18507 -13.46058 -13.34587 -13.19067 -12.92034 -12.72429 -12.29422 -12.28199 -12.09819 -11.86007 -10.99561 -10.74717 -10.69240 -9.62812 -9.38749 -8.30214 -7.04120 -0.17543 0.21502 1.04576 1.40081 1.40975 1.57633 2.20390 2.22692 2.74057 3.47931 3.67617 3.87062 3.95855 4.15982 4.40007 4.59135 4.79008 4.85524 5.09139 5.18903 5.24597 5.26845 5.69365 5.95933 6.68632 6.71401 6.84046 8.25770 8.49812 Molecular weight = 225.03amu Principal moments of inertia in cm(-1) A = 0.035050 B = 0.009369 C = 0.007428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.660072 B = 2987.735845 C = 3768.462887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.125 3.875 3 C -0.165 4.165 4 C -0.041 4.041 5 C -0.183 4.183 6 C 0.362 3.638 7 O -0.559 6.559 8 C -0.539 4.539 9 H 0.098 0.902 10 C 0.025 3.975 11 N -0.785 5.785 12 Si 0.995 3.005 13 H -0.262 1.262 14 H -0.272 1.272 15 H -0.242 1.242 16 C 0.171 3.829 17 Cl -0.031 7.031 18 N -0.511 5.511 19 H 0.094 0.906 20 H 0.110 0.890 21 H 0.072 0.928 22 H 0.189 0.811 23 H 0.163 0.837 24 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.242 7.480 0.199 13.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.014 4.014 3 C -0.184 4.184 4 C -0.066 4.066 5 C -0.188 4.188 6 C 0.258 3.742 7 O -0.451 6.451 8 C -0.569 4.569 9 H 0.116 0.884 10 C -0.194 4.194 11 N -0.414 5.414 12 Si 0.813 3.187 13 H -0.187 1.187 14 H -0.197 1.197 15 H -0.164 1.164 16 C 0.008 3.992 17 Cl -0.003 7.003 18 N -0.225 5.225 19 H 0.112 0.888 20 H 0.129 0.871 21 H 0.091 0.909 22 H 0.206 0.794 23 H 0.181 0.819 24 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -11.266 5.896 0.190 12.717 hybrid contribution 1.327 0.544 0.089 1.437 sum -9.939 6.440 0.279 11.846 Atomic orbital electron populations 1.20839 0.84885 1.04896 1.04451 1.22147 0.98934 0.86949 0.93367 1.22444 0.93771 1.00656 1.01521 1.22204 0.94980 0.97208 0.92234 1.22409 1.00267 0.93327 1.02765 1.18651 0.85093 0.90854 0.79555 1.90542 1.72640 1.32315 1.49565 1.21379 0.93069 0.95501 1.46998 0.88371 1.27216 0.99463 1.01224 0.91546 1.70103 1.10831 1.29021 1.31427 0.85040 0.77245 0.76914 0.79466 1.18675 1.19687 1.16440 1.22009 0.89615 0.87847 0.99735 1.98374 1.77894 1.27856 1.96134 1.66828 1.07616 1.32171 1.15841 0.88795 0.87134 0.90925 0.79410 0.81935 0.90801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.75 10.16 71.23 0.72 -1.03 14 2 C 0.12 3.77 6.78 42.59 0.29 4.06 14 3 C -0.16 -4.54 9.72 22.33 0.22 -4.32 14 4 C -0.04 -1.48 9.54 22.74 0.22 -1.26 14 5 C -0.18 -8.76 5.90 -19.89 -0.12 -8.88 14 6 C 0.36 20.73 6.90 25.68 0.18 20.91 14 7 O -0.56 -36.05 12.58 -4.57 -0.06 -36.11 14 8 C -0.54 -28.82 8.85 23.67 0.21 -28.61 14 9 H 0.10 4.53 6.13 -2.91 -0.02 4.51 14 10 C 0.02 1.29 5.49 85.40 0.47 1.76 14 11 N -0.78 -45.53 11.76 21.89 0.26 -45.27 14 12 Si 0.99 37.81 29.57 68.60 2.03 39.83 14 13 H -0.26 -9.59 7.11 99.48 0.71 -8.89 14 14 H -0.27 -10.07 7.11 99.48 0.71 -9.36 14 15 H -0.24 -8.34 7.11 99.48 0.71 -7.63 14 16 C 0.17 8.01 7.32 85.11 0.62 8.63 14 17 Cl -0.03 -1.53 26.21 -2.72 -0.07 -1.60 14 18 N -0.51 -20.45 10.24 -173.55 -1.78 -22.23 14 19 H 0.09 1.48 8.14 -2.39 -0.02 1.46 14 20 H 0.11 1.30 8.07 -2.38 -0.02 1.28 14 21 H 0.07 1.43 8.14 -2.39 -0.02 1.41 14 22 H 0.19 3.11 8.06 -2.91 -0.02 3.08 14 23 H 0.16 5.25 6.35 -2.91 -0.02 5.24 14 24 H 0.28 14.65 8.29 -92.71 -0.77 13.88 14 Total: -1.00 -73.54 235.53 4.42 -69.11 By element: Atomic # 1 Polarization: 3.76 SS G_CDS: 1.23 Total: 4.99 kcal Atomic # 6 Polarization: -11.55 SS G_CDS: 2.81 Total: -8.74 kcal Atomic # 7 Polarization: -65.98 SS G_CDS: -1.52 Total: -67.50 kcal Atomic # 8 Polarization: -36.05 SS G_CDS: -0.06 Total: -36.11 kcal Atomic # 14 Polarization: 37.81 SS G_CDS: 2.03 Total: 39.83 kcal Atomic # 17 Polarization: -1.53 SS G_CDS: -0.07 Total: -1.60 kcal Total: -73.54 4.42 -69.11 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000114903231.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.800 kcal (2) G-P(sol) polarization free energy of solvation -73.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds