Wall clock time and date at job start Mon Mar 30 2020 02:42:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30632 * 1 3 3 Si 1.86805 * 119.99846 * 2 1 4 4 H 1.48493 * 109.47121 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46925 * 299.99945 * 3 2 1 6 6 H 1.48503 * 109.46903 * 59.99794 * 3 2 1 7 7 C 1.40266 * 120.00645 * 180.02562 * 2 1 3 8 8 H 1.07990 * 120.00446 * 170.41270 * 7 2 1 9 9 C 1.40908 * 119.99371 * 350.13517 * 7 2 1 10 10 C 1.40650 * 120.32528 * 323.79373 * 9 7 2 11 11 C 1.37758 * 119.86873 * 179.79151 * 10 9 7 12 12 Cl 1.73600 * 119.72940 * 180.23072 * 11 10 9 13 13 C 1.38958 * 120.53869 * 0.48910 * 11 10 9 14 14 C 1.38160 * 120.66534 * 359.74344 * 13 11 10 15 15 C 1.39258 * 120.10843 * 0.02562 * 14 13 11 16 16 C 1.47386 * 120.27164 * 179.97438 * 15 14 13 17 17 N 1.34778 * 119.99862 * 354.01023 * 16 15 14 18 18 O 1.21606 * 120.00060 * 174.01277 * 16 15 14 19 19 H 0.96994 * 120.00232 * 0.02562 * 1 2 3 20 20 H 1.08003 * 120.06051 * 0.02562 * 10 9 7 21 21 H 1.07998 * 119.66447 * 179.71465 * 13 11 10 22 22 H 1.08002 * 119.94887 * 179.97438 * 14 13 11 23 23 H 0.97008 * 119.99867 * 359.97438 * 17 16 15 24 24 H 0.96999 * 120.00006 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2403 1.6178 0.0000 4 1 3.7002 1.3465 -0.0006 5 1 1.8815 2.3965 -1.2125 6 1 1.8815 2.3965 1.2125 7 6 2.0078 -1.2147 -0.0005 8 1 3.0764 -1.2211 -0.1563 9 6 1.3189 -2.4260 0.2080 10 6 0.2360 -2.4820 1.1038 11 6 -0.4336 -3.6703 1.2973 12 17 -1.7735 -3.7339 2.3992 13 6 -0.0418 -4.8196 0.6216 14 6 1.0218 -4.7909 -0.2597 15 6 1.7150 -3.6033 -0.4796 16 6 2.8505 -3.5688 -1.4185 17 7 3.2988 -4.7109 -1.9762 18 8 3.3830 -2.5097 -1.6900 19 1 -0.4850 0.8400 -0.0004 20 1 -0.0724 -1.5942 1.6360 21 1 -0.5739 -5.7447 0.7874 22 1 1.3167 -5.6912 -0.7784 23 1 2.8742 -5.5558 -1.7593 24 1 4.0463 -4.6883 -2.5939 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000116927918.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:01 Heat of formation + Delta-G solvation = -36.710148 kcal Electronic energy + Delta-G solvation = -12982.681419 eV Core-core repulsion = 10500.041701 eV Total energy + Delta-G solvation = -2482.639719 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 225.030 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.81540 -36.92924 -35.40647 -33.91874 -32.69454 -29.95998 -29.36858 -25.62914 -22.56252 -21.25698 -19.44030 -17.82811 -16.56700 -15.78683 -15.46204 -14.61198 -13.98832 -13.68129 -13.47144 -12.88239 -12.46289 -12.18790 -11.60598 -11.24697 -11.11596 -10.88724 -10.46106 -10.35752 -10.18966 -9.69750 -9.35384 -8.85207 -8.60429 -7.65456 -7.50140 -6.91457 -4.52597 2.10350 2.63457 3.07155 3.10775 3.16213 3.17731 3.91344 4.00296 4.48263 4.56730 5.41105 5.85127 6.06222 6.26094 6.68402 6.81671 7.06012 7.10954 7.36632 7.48725 7.57572 7.73862 7.87726 8.24172 8.49541 8.62947 8.72552 9.37131 10.04130 Molecular weight = 225.03amu Principal moments of inertia in cm(-1) A = 0.019678 B = 0.013654 C = 0.008265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1422.581553 B = 2050.172716 C = 3387.120031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.785 5.785 2 C 0.068 3.932 3 Si 0.919 3.081 4 H -0.256 1.256 5 H -0.272 1.272 6 H -0.272 1.272 7 C -0.407 4.407 8 H 0.108 0.892 9 C 0.151 3.849 10 C -0.136 4.136 11 C 0.006 3.994 12 Cl -0.120 7.120 13 C -0.243 4.243 14 C -0.042 4.042 15 C -0.263 4.263 16 C 0.566 3.434 17 N -0.875 5.875 18 O -0.542 6.542 19 H 0.285 0.715 20 H 0.126 0.874 21 H 0.104 0.896 22 H 0.101 0.899 23 H 0.391 0.609 24 H 0.389 0.611 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.775 -5.218 0.483 5.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.409 5.409 2 C -0.151 4.151 3 Si 0.743 3.257 4 H -0.179 1.179 5 H -0.198 1.198 6 H -0.197 1.197 7 C -0.435 4.435 8 H 0.126 0.874 9 C 0.146 3.854 10 C -0.156 4.156 11 C -0.021 4.021 12 Cl -0.091 7.091 13 C -0.263 4.263 14 C -0.061 4.061 15 C -0.268 4.268 16 C 0.358 3.642 17 N -0.439 5.439 18 O -0.420 6.420 19 H 0.096 0.904 20 H 0.144 0.856 21 H 0.122 0.878 22 H 0.119 0.881 23 H 0.219 0.781 24 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 0.669 -4.266 0.518 4.349 hybrid contribution 0.063 0.167 -0.159 0.239 sum 0.732 -4.098 0.359 4.179 Atomic orbital electron populations 1.69699 1.07817 1.30026 1.33384 1.26167 0.94855 1.02005 0.92122 0.86058 0.81267 0.79885 0.78470 1.17917 1.19750 1.19714 1.20173 0.97502 0.89249 1.36552 0.87408 1.17341 0.89131 0.91787 0.87154 1.21277 0.98614 0.95160 1.00547 1.20855 0.90471 0.96157 0.94631 1.98268 1.47944 1.98879 1.64039 1.20098 1.03460 0.96536 1.06252 1.20600 0.94239 0.95597 0.95703 1.19544 1.04073 0.96172 1.07043 1.18289 0.83273 0.82784 0.79901 1.43916 1.38683 1.10009 1.51301 1.90725 1.59052 1.29560 1.62667 0.90363 0.85589 0.87820 0.88115 0.78111 0.78247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.99 11.33 55.56 0.63 -19.36 14 2 C 0.07 1.71 5.23 -17.30 -0.09 1.62 14 3 Si 0.92 19.21 29.57 -169.99 -5.03 14.18 14 4 H -0.26 -5.42 7.11 56.52 0.40 -5.02 14 5 H -0.27 -5.63 7.11 56.52 0.40 -5.23 14 6 H -0.27 -5.44 7.11 56.52 0.40 -5.04 14 7 C -0.41 -10.89 7.58 -37.81 -0.29 -11.17 14 8 H 0.11 2.98 6.05 -52.49 -0.32 2.66 14 9 C 0.15 3.92 5.47 -106.55 -0.58 3.34 14 10 C -0.14 -3.38 8.39 -38.85 -0.33 -3.71 14 11 C 0.01 0.13 6.31 -39.49 -0.25 -0.12 14 12 Cl -0.12 -2.35 28.93 -51.86 -1.50 -3.85 14 13 C -0.24 -5.04 9.81 -39.34 -0.39 -5.42 14 14 C -0.04 -0.85 9.51 -39.23 -0.37 -1.23 14 15 C -0.26 -6.18 5.92 -104.37 -0.62 -6.80 14 16 C 0.57 12.63 7.99 -12.54 -0.10 12.53 14 17 N -0.87 -14.09 8.82 30.42 0.27 -13.82 14 18 O -0.54 -14.05 14.47 5.27 0.08 -13.98 14 19 H 0.29 6.58 8.29 -40.82 -0.34 6.24 14 20 H 0.13 3.24 6.78 -52.48 -0.36 2.88 14 21 H 0.10 1.89 8.06 -52.49 -0.42 1.47 14 22 H 0.10 1.61 6.44 -52.49 -0.34 1.27 14 23 H 0.39 5.15 6.89 -40.82 -0.28 4.86 14 24 H 0.39 5.40 8.93 -40.82 -0.36 5.04 14 LS Contribution 232.10 15.07 3.50 3.50 Total: -1.00 -28.86 232.10 -6.28 -35.14 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: -1.21 Total: 9.15 kcal Atomic # 6 Polarization: -7.95 SS G_CDS: -3.01 Total: -10.97 kcal Atomic # 7 Polarization: -34.07 SS G_CDS: 0.90 Total: -33.18 kcal Atomic # 8 Polarization: -14.05 SS G_CDS: 0.08 Total: -13.98 kcal Atomic # 14 Polarization: 19.21 SS G_CDS: -5.03 Total: 14.18 kcal Atomic # 17 Polarization: -2.35 SS G_CDS: -1.50 Total: -3.85 kcal Total LS contribution 3.50 Total: 3.50 kcal Total: -28.86 -6.28 -35.14 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000116927918.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.568 kcal (2) G-P(sol) polarization free energy of solvation -28.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds