Wall clock time and date at job start Mon Mar 30 2020 02:42:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30632 * 1 3 3 Si 1.86805 * 119.99846 * 2 1 4 4 H 1.48493 * 109.47121 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46925 * 299.99945 * 3 2 1 6 6 H 1.48503 * 109.46903 * 59.99794 * 3 2 1 7 7 C 1.40266 * 120.00645 * 180.02562 * 2 1 3 8 8 H 1.07990 * 120.00446 * 170.41270 * 7 2 1 9 9 C 1.40908 * 119.99371 * 350.13517 * 7 2 1 10 10 C 1.40650 * 120.32528 * 323.79373 * 9 7 2 11 11 C 1.37758 * 119.86873 * 179.79151 * 10 9 7 12 12 Cl 1.73600 * 119.72940 * 180.23072 * 11 10 9 13 13 C 1.38958 * 120.53869 * 0.48910 * 11 10 9 14 14 C 1.38160 * 120.66534 * 359.74344 * 13 11 10 15 15 C 1.39258 * 120.10843 * 0.02562 * 14 13 11 16 16 C 1.47386 * 120.27164 * 179.97438 * 15 14 13 17 17 N 1.34778 * 119.99862 * 354.01023 * 16 15 14 18 18 O 1.21606 * 120.00060 * 174.01277 * 16 15 14 19 19 H 0.96994 * 120.00232 * 0.02562 * 1 2 3 20 20 H 1.08003 * 120.06051 * 0.02562 * 10 9 7 21 21 H 1.07998 * 119.66447 * 179.71465 * 13 11 10 22 22 H 1.08002 * 119.94887 * 179.97438 * 14 13 11 23 23 H 0.97008 * 119.99867 * 359.97438 * 17 16 15 24 24 H 0.96999 * 120.00006 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2403 1.6178 0.0000 4 1 3.7002 1.3465 -0.0006 5 1 1.8815 2.3965 -1.2125 6 1 1.8815 2.3965 1.2125 7 6 2.0078 -1.2147 -0.0005 8 1 3.0764 -1.2211 -0.1563 9 6 1.3189 -2.4260 0.2080 10 6 0.2360 -2.4820 1.1038 11 6 -0.4336 -3.6703 1.2973 12 17 -1.7735 -3.7339 2.3992 13 6 -0.0418 -4.8196 0.6216 14 6 1.0218 -4.7909 -0.2597 15 6 1.7150 -3.6033 -0.4796 16 6 2.8505 -3.5688 -1.4185 17 7 3.2988 -4.7109 -1.9762 18 8 3.3830 -2.5097 -1.6900 19 1 -0.4850 0.8400 -0.0004 20 1 -0.0724 -1.5942 1.6360 21 1 -0.5739 -5.7447 0.7874 22 1 1.3167 -5.6912 -0.7784 23 1 2.8742 -5.5558 -1.7593 24 1 4.0463 -4.6883 -2.5939 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000116927918.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:00 Heat of formation + Delta-G solvation = -56.644449 kcal Electronic energy + Delta-G solvation = -12983.545835 eV Core-core repulsion = 10500.041701 eV Total energy + Delta-G solvation = -2483.504135 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 225.030 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.56268 -38.68219 -37.09550 -35.70403 -34.33553 -31.76452 -31.09624 -27.46077 -24.30300 -23.03591 -21.13391 -19.60220 -18.19517 -17.44265 -17.24385 -16.30257 -15.70606 -15.44439 -15.22005 -14.62276 -14.14259 -13.91299 -13.34728 -12.90924 -12.90089 -12.66817 -12.19245 -12.05446 -11.87745 -11.41387 -11.14634 -10.45582 -10.35843 -9.42003 -9.28909 -8.72875 -6.43688 0.31828 0.89409 1.35466 1.42566 1.46852 1.51099 2.20257 2.24355 2.73989 3.00456 3.57761 4.28722 4.45483 4.62594 4.94833 5.04262 5.23822 5.31702 5.62788 5.78781 5.86390 6.11998 6.21012 6.52300 6.73451 6.78491 6.93298 7.75620 8.25124 Molecular weight = 225.03amu Principal moments of inertia in cm(-1) A = 0.019678 B = 0.013654 C = 0.008265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1422.581553 B = 2050.172716 C = 3387.120031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.818 5.818 2 C 0.032 3.968 3 Si 0.980 3.020 4 H -0.266 1.266 5 H -0.267 1.267 6 H -0.255 1.255 7 C -0.448 4.448 8 H 0.086 0.914 9 C 0.123 3.877 10 C -0.163 4.163 11 C 0.002 3.998 12 Cl -0.096 7.096 13 C -0.235 4.235 14 C -0.033 4.033 15 C -0.279 4.279 16 C 0.561 3.439 17 N -0.842 5.842 18 O -0.586 6.586 19 H 0.292 0.708 20 H 0.106 0.894 21 H 0.139 0.861 22 H 0.153 0.847 23 H 0.410 0.590 24 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.530 -7.249 0.209 7.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C -0.184 4.184 3 Si 0.801 3.199 4 H -0.190 1.190 5 H -0.192 1.192 6 H -0.180 1.180 7 C -0.476 4.476 8 H 0.104 0.896 9 C 0.119 3.881 10 C -0.183 4.183 11 C -0.024 4.024 12 Cl -0.067 7.067 13 C -0.254 4.254 14 C -0.051 4.051 15 C -0.284 4.284 16 C 0.352 3.648 17 N -0.408 5.408 18 O -0.468 6.468 19 H 0.102 0.898 20 H 0.124 0.876 21 H 0.157 0.843 22 H 0.170 0.830 23 H 0.241 0.759 24 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 0.416 -6.365 0.241 6.383 hybrid contribution 0.082 0.524 -0.069 0.535 sum 0.498 -5.841 0.172 5.865 Atomic orbital electron populations 1.69724 1.08720 1.30987 1.34964 1.26830 0.95595 1.04509 0.91469 0.85176 0.79215 0.76318 0.79146 1.19008 1.19153 1.17962 1.20115 0.96774 0.90884 1.39853 0.89592 1.17710 0.89919 0.92786 0.87716 1.21106 0.99939 0.95689 1.01609 1.21084 0.90619 0.95971 0.94770 1.98271 1.46505 1.98809 1.63119 1.20590 1.03072 0.97001 1.04757 1.21075 0.92953 0.96110 0.94994 1.19924 1.04790 0.96694 1.06995 1.18306 0.82994 0.83567 0.79946 1.43493 1.38369 1.09005 1.49945 1.90710 1.60320 1.31702 1.64070 0.89751 0.87623 0.84325 0.82994 0.75851 0.76458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -43.20 11.33 21.88 0.25 -42.95 14 2 C 0.03 1.65 5.23 85.36 0.45 2.10 14 3 Si 0.98 40.82 29.57 68.60 2.03 42.85 14 4 H -0.27 -11.34 7.11 99.48 0.71 -10.63 14 5 H -0.27 -10.72 7.11 99.48 0.71 -10.01 14 6 H -0.26 -9.81 7.11 99.48 0.71 -9.10 14 7 C -0.45 -25.08 7.58 23.42 0.18 -24.90 14 8 H 0.09 5.05 6.05 -2.92 -0.02 5.03 14 9 C 0.12 6.56 5.47 -21.11 -0.12 6.44 14 10 C -0.16 -8.27 8.39 22.75 0.19 -8.08 14 11 C 0.00 0.11 6.31 22.33 0.14 0.25 14 12 Cl -0.10 -3.58 28.93 -2.72 -0.08 -3.66 14 13 C -0.23 -8.87 9.81 22.42 0.22 -8.65 14 14 C -0.03 -1.20 9.51 22.50 0.21 -0.99 14 15 C -0.28 -12.85 5.92 -19.70 -0.12 -12.97 14 16 C 0.56 24.53 7.99 86.65 0.69 25.22 14 17 N -0.84 -24.55 8.82 -175.91 -1.55 -26.10 14 18 O -0.59 -30.96 14.47 -4.05 -0.06 -31.02 14 19 H 0.29 13.89 8.29 -92.71 -0.77 13.12 14 20 H 0.11 5.67 6.78 -2.91 -0.02 5.65 14 21 H 0.14 4.31 8.06 -2.91 -0.02 4.28 14 22 H 0.15 3.95 6.44 -2.91 -0.02 3.93 14 23 H 0.41 8.88 6.89 -92.70 -0.64 8.24 14 24 H 0.40 10.01 8.93 -92.71 -0.83 9.19 14 Total: -1.00 -65.00 232.10 2.24 -62.76 By element: Atomic # 1 Polarization: 19.89 SS G_CDS: -0.19 Total: 19.69 kcal Atomic # 6 Polarization: -23.41 SS G_CDS: 1.85 Total: -21.56 kcal Atomic # 7 Polarization: -67.75 SS G_CDS: -1.30 Total: -69.05 kcal Atomic # 8 Polarization: -30.96 SS G_CDS: -0.06 Total: -31.02 kcal Atomic # 14 Polarization: 40.82 SS G_CDS: 2.03 Total: 42.85 kcal Atomic # 17 Polarization: -3.58 SS G_CDS: -0.08 Total: -3.66 kcal Total: -65.00 2.24 -62.76 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000116927918.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.113 kcal (2) G-P(sol) polarization free energy of solvation -64.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds