Wall clock time and date at job start Mon Mar 30 2020 02:42:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30638 * 1 3 3 Si 1.86803 * 119.99758 * 2 1 4 4 H 1.48497 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48495 * 109.47284 * 119.99823 * 3 2 1 6 6 H 1.48501 * 109.46495 * 240.00028 * 3 2 1 7 7 C 1.40266 * 120.00032 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99810 * 156.32067 * 7 2 1 9 9 C 1.40830 * 120.00198 * 336.31583 * 7 2 1 10 10 C 1.40738 * 120.31230 * 326.24193 * 9 7 2 11 11 C 1.37522 * 119.90307 * 179.76320 * 10 9 7 12 12 C 1.38984 * 120.55840 * 0.51834 * 11 10 9 13 13 Cl 1.73593 * 119.68304 * 179.75955 * 12 11 10 14 14 C 1.38396 * 120.63829 * 359.73564 * 12 11 10 15 15 C 1.39181 * 120.07594 * 0.02562 * 14 12 11 16 16 C 1.47430 * 120.27554 * 179.97438 * 15 14 12 17 17 N 1.34778 * 120.00358 * 354.08840 * 16 15 14 18 18 O 1.21617 * 120.00154 * 174.08538 * 16 15 14 19 19 H 0.97000 * 119.99930 * 174.13056 * 1 2 3 20 20 H 1.08005 * 120.04915 * 0.02562 * 10 9 7 21 21 H 1.08005 * 119.72673 * 180.25249 * 11 10 9 22 22 H 1.08001 * 119.96528 * 180.02562 * 14 12 11 23 23 H 0.97002 * 119.99447 * 359.97438 * 17 16 15 24 24 H 0.96994 * 120.00007 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2403 1.6178 0.0000 4 1 1.2753 2.7464 -0.0006 5 1 3.0940 1.6966 1.2125 6 1 3.0940 1.6964 -1.2126 7 6 2.0077 -1.2147 0.0005 8 1 3.0195 -1.2542 -0.3751 9 6 1.3926 -2.3828 0.4910 10 6 0.4792 -2.3097 1.5592 11 6 -0.1203 -3.4550 2.0283 12 6 0.1757 -4.6898 1.4632 13 17 -0.5896 -6.1219 2.0772 14 6 1.0744 -4.7887 0.4153 15 6 1.6928 -3.6459 -0.0834 16 6 2.6512 -3.7463 -1.1991 17 7 3.0226 -4.9564 -1.6619 18 8 3.1068 -2.7370 -1.7021 19 1 -0.4850 -0.8356 -0.0859 20 1 0.2462 -1.3550 2.0072 21 1 -0.8239 -3.3951 2.8455 22 1 1.2961 -5.7538 -0.0159 23 1 2.6595 -5.7614 -1.2605 24 1 3.6528 -5.0224 -2.3962 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000116928036.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:19 Heat of formation + Delta-G solvation = -43.724595 kcal Electronic energy + Delta-G solvation = -12992.675836 eV Core-core repulsion = 10509.731948 eV Total energy + Delta-G solvation = -2482.943888 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 225.030 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.94629 -37.04130 -35.54651 -34.05620 -32.77964 -29.97015 -29.39462 -25.33532 -22.85591 -21.23238 -19.62944 -18.32159 -16.80648 -15.94845 -14.95349 -14.53359 -14.28413 -13.90607 -13.59266 -12.98755 -12.47279 -12.26991 -11.94772 -11.32263 -11.12777 -10.65863 -10.47746 -10.33913 -10.14113 -9.79796 -9.17015 -8.92138 -8.70714 -8.03229 -7.70017 -7.32990 -4.63652 2.06887 2.45749 3.12818 3.18981 3.20979 3.33330 3.91119 3.92636 4.40125 4.45880 5.24910 5.68902 5.84843 6.22460 6.48122 6.66665 7.00726 7.04797 7.30876 7.37991 7.49186 7.68019 7.83892 8.00290 8.18914 8.50384 8.64772 9.28554 9.82611 Molecular weight = 225.03amu Principal moments of inertia in cm(-1) A = 0.028566 B = 0.010375 C = 0.007857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.952593 B = 2698.166966 C = 3562.843085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.774 5.774 2 C 0.032 3.968 3 Si 1.069 2.931 4 H -0.272 1.272 5 H -0.272 1.272 6 H -0.271 1.271 7 C -0.451 4.451 8 H 0.110 0.890 9 C 0.114 3.886 10 C -0.190 4.190 11 C -0.063 4.063 12 C -0.171 4.171 13 Cl -0.126 7.126 14 C -0.025 4.025 15 C -0.263 4.263 16 C 0.567 3.433 17 N -0.874 5.874 18 O -0.542 6.542 19 H 0.300 0.700 20 H 0.114 0.886 21 H 0.104 0.896 22 H 0.103 0.897 23 H 0.391 0.609 24 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.428 -5.240 0.992 5.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.192 4.192 3 Si 0.891 3.109 4 H -0.197 1.197 5 H -0.197 1.197 6 H -0.196 1.196 7 C -0.476 4.476 8 H 0.127 0.873 9 C 0.109 3.891 10 C -0.209 4.209 11 C -0.082 4.082 12 C -0.198 4.198 13 Cl -0.098 7.098 14 C -0.044 4.044 15 C -0.268 4.268 16 C 0.359 3.641 17 N -0.438 5.438 18 O -0.421 6.421 19 H 0.114 0.886 20 H 0.132 0.868 21 H 0.122 0.878 22 H 0.121 0.879 23 H 0.219 0.781 24 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 1.281 -2.942 0.898 3.333 hybrid contribution 0.016 -2.530 -0.076 2.531 sum 1.297 -5.472 0.822 5.684 Atomic orbital electron populations 1.70397 1.08316 1.34521 1.26350 1.27398 0.95591 1.04955 0.91252 0.83574 0.75693 0.73094 0.78502 1.19711 1.19697 1.19561 1.21277 1.03256 0.92395 1.30717 0.87267 1.17512 0.89684 0.91984 0.89897 1.21159 1.03476 0.96805 0.99452 1.20580 0.98153 0.91146 0.98324 1.19943 1.08209 0.85919 1.05766 1.98232 1.82186 1.41341 1.88082 1.20589 0.93776 0.96563 0.93489 1.19260 1.09851 0.94307 1.03413 1.18212 0.80907 0.82353 0.82635 1.43902 1.50910 1.08638 1.40372 1.90723 1.56311 1.35082 1.59959 0.88649 0.86808 0.87765 0.87943 0.78081 0.78125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -19.74 12.60 55.56 0.70 -19.04 14 2 C 0.03 0.79 4.93 -17.30 -0.09 0.70 14 3 Si 1.07 21.33 30.00 -169.99 -5.10 16.23 14 4 H -0.27 -5.32 7.11 56.52 0.40 -4.92 14 5 H -0.27 -5.16 7.11 56.52 0.40 -4.75 14 6 H -0.27 -5.32 7.11 56.52 0.40 -4.92 14 7 C -0.45 -11.84 7.62 -37.84 -0.29 -12.13 14 8 H 0.11 3.00 5.97 -52.49 -0.31 2.69 14 9 C 0.11 2.90 5.13 -106.54 -0.55 2.35 14 10 C -0.19 -4.49 8.04 -38.90 -0.31 -4.81 14 11 C -0.06 -1.35 9.79 -39.57 -0.39 -1.73 14 12 C -0.17 -3.55 6.33 -39.25 -0.25 -3.80 14 13 Cl -0.13 -2.25 28.93 -51.86 -1.50 -3.75 14 14 C -0.02 -0.51 9.29 -39.17 -0.36 -0.87 14 15 C -0.26 -6.16 5.92 -104.38 -0.62 -6.78 14 16 C 0.57 12.73 7.99 -12.52 -0.10 12.63 14 17 N -0.87 -14.36 8.82 30.44 0.27 -14.09 14 18 O -0.54 -14.08 14.42 5.26 0.08 -14.01 14 19 H 0.30 7.84 6.93 -40.82 -0.28 7.56 14 20 H 0.11 2.72 7.07 -52.48 -0.37 2.34 14 21 H 0.10 2.01 8.06 -52.48 -0.42 1.59 14 22 H 0.10 1.77 6.44 -52.49 -0.34 1.44 14 23 H 0.39 5.39 6.89 -40.82 -0.28 5.11 14 24 H 0.39 5.52 8.93 -40.82 -0.36 5.15 14 LS Contribution 231.42 15.07 3.49 3.49 Total: -1.00 -28.13 231.42 -6.19 -34.31 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: -1.17 Total: 11.30 kcal Atomic # 6 Polarization: -11.48 SS G_CDS: -2.95 Total: -14.43 kcal Atomic # 7 Polarization: -34.11 SS G_CDS: 0.97 Total: -33.14 kcal Atomic # 8 Polarization: -14.08 SS G_CDS: 0.08 Total: -14.01 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.10 Total: 16.23 kcal Atomic # 17 Polarization: -2.25 SS G_CDS: -1.50 Total: -3.75 kcal Total LS contribution 3.49 Total: 3.49 kcal Total: -28.13 -6.19 -34.31 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000116928036.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.412 kcal (2) G-P(sol) polarization free energy of solvation -28.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds