Wall clock time and date at job start Mon Mar 30 2020 03:10:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.35673 * 117.00364 * 2 1 4 4 C 1.39494 * 119.57731 * 179.97438 * 3 2 1 5 5 C 1.38273 * 119.38214 * 179.97438 * 4 3 2 6 6 C 1.39022 * 118.54538 * 0.02562 * 5 4 3 7 7 F 1.35104 * 120.44695 * 179.97438 * 6 5 4 8 8 C 1.39747 * 119.11168 * 0.24371 * 6 5 4 9 9 C 1.47849 * 119.73673 * 179.73011 * 8 6 5 10 10 O 1.21779 * 119.99630 * 0.02562 * 9 8 6 11 11 C 1.41666 * 120.00152 * 180.02562 * 9 8 6 12 12 H 1.08007 * 119.99938 * 359.97438 * 11 9 8 13 13 C 1.40416 * 119.99980 * 179.97438 * 11 9 8 14 14 N 1.30499 * 119.99876 * 359.97438 * 13 11 9 15 15 Si 1.86801 * 119.99834 * 179.97438 * 13 11 9 16 16 H 1.48495 * 109.47241 * 60.00073 * 15 13 11 17 17 H 1.48506 * 109.47077 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.47148 * 299.99971 * 15 13 11 19 19 N 1.31827 * 119.56756 * 359.97367 * 3 2 1 20 20 H 1.09006 * 109.47252 * 300.00636 * 1 2 3 21 21 H 1.09001 * 109.46956 * 60.00325 * 1 2 3 22 22 H 1.09001 * 109.47328 * 180.02562 * 1 2 3 23 23 H 1.08007 * 120.30706 * 0.02562 * 4 3 2 24 24 H 1.07996 * 120.73456 * 179.97438 * 5 4 3 25 25 H 0.97000 * 119.99963 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0449 1.2088 0.0000 4 6 3.4385 1.2715 0.0005 5 6 4.0621 2.5056 0.0000 6 6 3.2718 3.6493 -0.0005 7 9 3.8407 4.8747 -0.0005 8 6 1.8808 3.5145 0.0047 9 6 1.0271 4.7216 0.0103 10 8 1.5366 5.8277 0.0098 11 6 -0.3836 4.5915 0.0161 12 1 -0.8354 3.6105 0.0161 13 6 -1.1943 5.7379 0.0219 14 7 -0.6484 6.9232 0.0225 15 14 -3.0545 5.5663 0.0289 16 1 -3.4783 4.8210 1.2414 17 1 -3.6760 6.9150 0.0339 18 1 -3.4879 4.8265 -1.1835 19 7 1.3187 2.3090 -0.0005 20 1 -0.3634 0.5140 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 4.0248 0.3644 0.0005 24 1 5.1395 2.5795 0.0008 25 1 -1.2084 7.7151 0.0269 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000148287388.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:11 Heat of formation + Delta-G solvation = -85.181909 kcal Electronic energy + Delta-G solvation = -15038.487766 eV Core-core repulsion = 12125.409779 eV Total energy + Delta-G solvation = -2913.077987 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 225.059 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -47.97364 -39.98374 -37.54650 -36.20044 -32.77877 -32.09384 -29.71827 -27.26529 -26.69329 -23.81641 -22.34799 -20.31891 -17.65434 -17.39047 -16.77234 -16.00216 -15.72300 -15.25751 -14.75527 -14.32947 -13.84579 -13.30602 -13.11915 -12.73869 -12.67406 -12.05919 -11.84068 -11.58364 -11.42495 -11.06475 -10.48471 -10.45354 -10.37746 -9.44588 -9.29152 -9.01111 -7.75824 -7.58939 -6.40645 -4.96226 1.32710 1.61818 3.04260 3.09792 3.12509 3.41340 3.80556 3.95840 4.49269 4.67101 4.87575 5.16738 5.33708 5.52464 5.64420 5.66622 5.74043 5.98350 6.05600 6.21779 6.41304 6.97981 7.18339 7.58654 8.11405 8.31371 8.66591 8.74253 10.19226 10.40734 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.025631 B = 0.010906 C = 0.007682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.170111 B = 2566.849623 C = 3643.870419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.314 6.314 3 C 0.293 3.707 4 C -0.179 4.179 5 C -0.092 4.092 6 C 0.032 3.968 7 F -0.115 7.115 8 C 0.124 3.876 9 C 0.381 3.619 10 O -0.525 6.525 11 C -0.478 4.478 12 H 0.085 0.915 13 C 0.072 3.928 14 N -0.727 5.727 15 Si 0.914 3.086 16 H -0.263 1.263 17 H -0.277 1.277 18 H -0.263 1.263 19 N -0.484 5.484 20 H 0.061 0.939 21 H 0.061 0.939 22 H 0.090 0.910 23 H 0.141 0.859 24 H 0.146 0.854 25 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.945 -10.294 -0.014 10.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.221 6.221 3 C 0.113 3.887 4 C -0.199 4.199 5 C -0.118 4.118 6 C 0.010 3.990 7 F -0.093 7.093 8 C -0.014 4.014 9 C 0.277 3.723 10 O -0.412 6.412 11 C -0.510 4.510 12 H 0.103 0.897 13 C -0.152 4.152 14 N -0.356 5.356 15 Si 0.738 3.262 16 H -0.188 1.188 17 H -0.202 1.202 18 H -0.188 1.188 19 N -0.208 5.208 20 H 0.079 0.921 21 H 0.079 0.921 22 H 0.108 0.892 23 H 0.159 0.841 24 H 0.164 0.836 25 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 1.444 -9.848 -0.018 9.953 hybrid contribution -0.068 0.030 0.002 0.075 sum 1.376 -9.818 -0.016 9.914 Atomic orbital electron populations 1.22832 0.77422 1.02172 1.03157 1.86148 1.22820 1.24674 1.88501 1.20016 0.89272 0.85243 0.94216 1.20837 0.91820 0.98312 1.08972 1.21333 1.00617 0.90649 0.99208 1.18853 0.92192 0.81067 1.06887 1.91545 1.84239 1.39937 1.93580 1.23738 0.91096 0.94460 0.92104 1.17952 0.88647 0.84083 0.81641 1.90600 1.75828 1.25135 1.49647 1.20955 0.92122 0.94191 1.43683 0.89668 1.26134 1.01367 0.94697 0.93015 1.69944 1.37624 0.98673 1.29357 0.86305 0.81580 0.78366 0.79998 1.18775 1.20215 1.18779 1.67633 1.39220 0.97479 1.16514 0.92061 0.92061 0.89208 0.84121 0.83642 0.91159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.56 10.38 101.05 1.05 1.61 15 2 O -0.31 -5.17 10.47 -18.72 -0.20 -5.37 15 3 C 0.29 5.50 7.50 -17.09 -0.13 5.38 15 4 C -0.18 -2.88 10.05 -39.10 -0.39 -3.27 15 5 C -0.09 -1.56 10.15 -39.28 -0.40 -1.96 15 6 C 0.03 0.71 7.32 -38.73 -0.28 0.43 15 7 F -0.11 -2.75 15.54 2.25 0.04 -2.71 15 8 C 0.12 3.06 6.74 -82.86 -0.56 2.50 15 9 C 0.38 11.09 6.91 -34.34 -0.24 10.85 15 10 O -0.52 -16.88 13.85 5.12 0.07 -16.81 15 11 C -0.48 -13.34 9.01 -37.46 -0.34 -13.67 15 12 H 0.09 2.22 7.36 -52.48 -0.39 1.84 15 13 C 0.07 1.92 5.50 -17.30 -0.10 1.83 15 14 N -0.73 -20.73 11.73 55.57 0.65 -20.07 15 15 Si 0.91 19.16 29.56 -169.99 -5.03 14.14 15 16 H -0.26 -5.37 7.11 56.52 0.40 -4.97 15 17 H -0.28 -5.62 7.11 56.52 0.40 -5.21 15 18 H -0.26 -5.37 7.11 56.52 0.40 -4.97 15 19 N -0.48 -10.74 8.27 -9.74 -0.08 -10.82 15 20 H 0.06 0.91 8.10 -51.93 -0.42 0.49 15 21 H 0.06 0.91 8.10 -51.93 -0.42 0.49 15 22 H 0.09 0.93 8.14 -51.93 -0.42 0.50 15 23 H 0.14 1.76 8.06 -52.48 -0.42 1.33 15 24 H 0.15 1.90 8.06 -52.49 -0.42 1.48 15 25 H 0.28 7.05 8.29 -40.82 -0.34 6.72 15 LS Contribution 240.41 15.07 3.62 3.62 Total: -1.00 -32.73 240.41 -3.93 -36.66 By element: Atomic # 1 Polarization: -0.68 SS G_CDS: -1.63 Total: -2.31 kcal Atomic # 6 Polarization: 5.07 SS G_CDS: -1.38 Total: 3.68 kcal Atomic # 7 Polarization: -31.47 SS G_CDS: 0.57 Total: -30.90 kcal Atomic # 8 Polarization: -22.06 SS G_CDS: -0.13 Total: -22.18 kcal Atomic # 9 Polarization: -2.75 SS G_CDS: 0.04 Total: -2.71 kcal Atomic # 14 Polarization: 19.16 SS G_CDS: -5.03 Total: 14.14 kcal Total LS contribution 3.62 Total: 3.62 kcal Total: -32.73 -3.93 -36.66 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000148287388.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.520 kcal (2) G-P(sol) polarization free energy of solvation -32.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds