Wall clock time and date at job start Mon Mar 30 2020 03:10:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.35673 * 117.00364 * 2 1 4 4 C 1.39494 * 119.57731 * 179.97438 * 3 2 1 5 5 C 1.38273 * 119.38214 * 179.97438 * 4 3 2 6 6 C 1.39022 * 118.54538 * 0.02562 * 5 4 3 7 7 F 1.35104 * 120.44695 * 179.97438 * 6 5 4 8 8 C 1.39747 * 119.11168 * 0.24371 * 6 5 4 9 9 C 1.47849 * 119.73673 * 179.73011 * 8 6 5 10 10 O 1.21779 * 119.99630 * 0.02562 * 9 8 6 11 11 C 1.41666 * 120.00152 * 180.02562 * 9 8 6 12 12 H 1.08007 * 119.99938 * 359.97438 * 11 9 8 13 13 C 1.40416 * 119.99980 * 179.97438 * 11 9 8 14 14 N 1.30499 * 119.99876 * 359.97438 * 13 11 9 15 15 Si 1.86801 * 119.99834 * 179.97438 * 13 11 9 16 16 H 1.48495 * 109.47241 * 60.00073 * 15 13 11 17 17 H 1.48506 * 109.47077 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.47148 * 299.99971 * 15 13 11 19 19 N 1.31827 * 119.56756 * 359.97367 * 3 2 1 20 20 H 1.09006 * 109.47252 * 300.00636 * 1 2 3 21 21 H 1.09001 * 109.46956 * 60.00325 * 1 2 3 22 22 H 1.09001 * 109.47328 * 180.02562 * 1 2 3 23 23 H 1.08007 * 120.30706 * 0.02562 * 4 3 2 24 24 H 1.07996 * 120.73456 * 179.97438 * 5 4 3 25 25 H 0.97000 * 119.99963 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0449 1.2088 0.0000 4 6 3.4385 1.2715 0.0005 5 6 4.0621 2.5056 0.0000 6 6 3.2718 3.6493 -0.0005 7 9 3.8407 4.8747 -0.0005 8 6 1.8808 3.5145 0.0047 9 6 1.0271 4.7216 0.0103 10 8 1.5366 5.8277 0.0098 11 6 -0.3836 4.5915 0.0161 12 1 -0.8354 3.6105 0.0161 13 6 -1.1943 5.7379 0.0219 14 7 -0.6484 6.9232 0.0225 15 14 -3.0545 5.5663 0.0289 16 1 -3.4783 4.8210 1.2414 17 1 -3.6760 6.9150 0.0339 18 1 -3.4879 4.8265 -1.1835 19 7 1.3187 2.3090 -0.0005 20 1 -0.3634 0.5140 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 4.0248 0.3644 0.0005 24 1 5.1395 2.5795 0.0008 25 1 -1.2084 7.7151 0.0269 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000148287388.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:11 Heat of formation + Delta-G solvation = -110.063393 kcal Electronic energy + Delta-G solvation = -15039.566708 eV Core-core repulsion = 12125.409779 eV Total energy + Delta-G solvation = -2914.156929 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 225.059 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -49.72717 -41.48716 -39.18599 -38.08076 -34.87231 -33.64179 -31.29564 -29.20582 -28.11142 -25.47881 -23.85408 -22.17684 -19.24018 -19.03917 -18.39794 -17.96834 -17.16583 -17.06282 -16.39443 -15.70512 -15.59758 -15.00448 -14.53573 -14.53065 -14.39264 -13.72745 -13.64834 -13.33385 -12.75146 -12.74072 -12.44804 -12.09556 -11.91609 -11.04432 -10.94484 -10.90553 -9.68583 -9.35697 -8.43200 -7.14703 -0.28844 0.12992 1.36236 1.37139 1.52864 2.04427 2.09395 2.18726 2.66467 3.09248 3.34296 3.56471 3.77416 3.92195 4.23356 4.48582 4.52317 4.60899 4.82378 4.83078 4.89321 5.13981 5.43336 5.99241 6.14196 6.57191 6.60822 6.80383 8.10681 8.38779 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.025631 B = 0.010906 C = 0.007682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.170111 B = 2566.849623 C = 3643.870419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.305 6.305 3 C 0.285 3.715 4 C -0.145 4.145 5 C -0.069 4.069 6 C 0.007 3.993 7 F -0.135 7.135 8 C 0.080 3.920 9 C 0.356 3.644 10 O -0.577 6.577 11 C -0.506 4.506 12 H 0.094 0.906 13 C 0.018 3.982 14 N -0.777 5.777 15 Si 1.001 2.999 16 H -0.251 1.251 17 H -0.265 1.265 18 H -0.251 1.251 19 N -0.503 5.503 20 H 0.048 0.952 21 H 0.049 0.951 22 H 0.135 0.865 23 H 0.195 0.805 24 H 0.195 0.805 25 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.855 -13.308 -0.011 13.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.213 6.213 3 C 0.103 3.897 4 C -0.166 4.166 5 C -0.094 4.094 6 C -0.015 4.015 7 F -0.114 7.114 8 C -0.056 4.056 9 C 0.255 3.745 10 O -0.470 6.470 11 C -0.537 4.537 12 H 0.112 0.888 13 C -0.201 4.201 14 N -0.406 5.406 15 Si 0.819 3.181 16 H -0.175 1.175 17 H -0.189 1.189 18 H -0.175 1.175 19 N -0.229 5.229 20 H 0.067 0.933 21 H 0.067 0.933 22 H 0.153 0.847 23 H 0.212 0.788 24 H 0.212 0.788 25 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 1.357 -12.885 -0.015 12.956 hybrid contribution 0.044 0.767 0.001 0.769 sum 1.402 -12.118 -0.015 12.199 Atomic orbital electron populations 1.23063 0.76188 1.04744 1.01982 1.86186 1.23992 1.23008 1.88079 1.20503 0.90662 0.84960 0.93577 1.21467 0.90875 0.99807 1.04411 1.21803 1.02499 0.88655 0.96437 1.19217 0.92001 0.81968 1.08357 1.91483 1.84279 1.41666 1.93951 1.22904 0.91966 0.94007 0.96682 1.18551 0.90073 0.85094 0.80732 1.90529 1.76963 1.27461 1.52041 1.21355 0.92562 0.95270 1.44502 0.88774 1.27404 1.07668 0.93661 0.91409 1.70071 1.40446 0.99995 1.30096 0.85015 0.73293 0.79088 0.80712 1.17486 1.18873 1.17503 1.67399 1.40532 0.97581 1.17355 0.93269 0.93263 0.84740 0.78779 0.78793 0.90287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.91 10.38 113.37 1.18 2.08 15 2 O -0.31 -9.07 10.47 -89.90 -0.94 -10.02 15 3 C 0.29 10.00 7.50 85.00 0.64 10.64 15 4 C -0.15 -4.01 10.05 22.58 0.23 -3.78 15 5 C -0.07 -2.10 10.15 22.47 0.23 -1.87 15 6 C 0.01 0.31 7.32 22.82 0.17 0.48 15 7 F -0.14 -6.74 15.54 44.97 0.70 -6.04 15 8 C 0.08 4.10 6.74 41.88 0.28 4.39 15 9 C 0.36 21.95 6.91 25.66 0.18 22.13 15 10 O -0.58 -39.77 13.85 -4.60 -0.06 -39.84 15 11 C -0.51 -29.50 9.01 23.65 0.21 -29.29 15 12 H 0.09 5.09 7.36 -2.91 -0.02 5.07 15 13 C 0.02 1.01 5.50 85.42 0.47 1.48 15 14 N -0.78 -46.31 11.73 21.90 0.26 -46.06 15 15 Si 1.00 39.66 29.56 68.60 2.03 41.69 15 16 H -0.25 -9.38 7.11 99.48 0.71 -8.67 15 17 H -0.26 -9.83 7.11 99.48 0.71 -9.12 15 18 H -0.25 -9.39 7.11 99.48 0.71 -8.68 15 19 N -0.50 -22.40 8.27 -297.82 -2.46 -24.86 15 20 H 0.05 1.40 8.10 -2.38 -0.02 1.38 15 21 H 0.05 1.40 8.10 -2.39 -0.02 1.38 15 22 H 0.13 2.26 8.14 -2.39 -0.02 2.24 15 23 H 0.20 3.39 8.06 -2.91 -0.02 3.36 15 24 H 0.19 4.02 8.06 -2.91 -0.02 4.00 15 25 H 0.29 15.13 8.29 -92.71 -0.77 14.36 15 Total: -1.00 -77.88 240.41 4.32 -73.56 By element: Atomic # 1 Polarization: 4.09 SS G_CDS: 1.23 Total: 5.32 kcal Atomic # 6 Polarization: 2.67 SS G_CDS: 3.58 Total: 6.24 kcal Atomic # 7 Polarization: -68.71 SS G_CDS: -2.21 Total: -70.92 kcal Atomic # 8 Polarization: -48.85 SS G_CDS: -1.01 Total: -49.85 kcal Atomic # 9 Polarization: -6.74 SS G_CDS: 0.70 Total: -6.04 kcal Atomic # 14 Polarization: 39.66 SS G_CDS: 2.03 Total: 41.69 kcal Total: -77.88 4.32 -73.56 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000148287388.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.504 kcal (2) G-P(sol) polarization free energy of solvation -77.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds