Wall clock time and date at job start Mon Mar 30 2020 02:35:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.46691 * 2 1 4 4 C 1.53003 * 109.47116 * 119.99359 * 2 1 3 5 5 H 1.08999 * 109.47144 * 199.22538 * 4 2 1 6 6 C 1.50698 * 109.46756 * 79.23107 * 4 2 1 7 7 H 1.08002 * 120.00100 * 245.24419 * 6 4 2 8 8 C 1.37879 * 120.00183 * 65.24223 * 6 4 2 9 9 N 1.31513 * 119.99934 * 183.55563 * 8 6 4 10 10 Si 1.86799 * 119.99855 * 3.55524 * 8 6 4 11 11 H 1.48498 * 109.47069 * 94.69659 * 10 8 6 12 12 H 1.48508 * 109.47215 * 214.69668 * 10 8 6 13 13 H 1.48498 * 109.47161 * 334.69416 * 10 8 6 14 14 C 1.52994 * 109.47351 * 319.22994 * 4 2 1 15 15 C 1.50477 * 108.87584 * 174.56332 * 14 4 2 16 16 C 1.54238 * 108.51910 * 214.93083 * 15 14 4 17 17 C 1.45546 * 112.40817 * 280.00685 * 16 15 14 18 18 C 1.54239 * 112.32541 * 61.98787 * 17 16 15 19 19 C 1.50551 * 108.48332 * 279.88030 * 18 17 16 20 20 C 1.54063 * 108.88050 * 297.54050 * 14 4 2 21 21 H 1.08997 * 109.47434 * 305.79282 * 1 2 3 22 22 H 1.08997 * 109.47128 * 65.79994 * 1 2 3 23 23 H 1.09007 * 109.46723 * 185.80032 * 1 2 3 24 24 H 1.09003 * 109.47556 * 240.00017 * 2 1 3 25 25 H 1.08999 * 109.46881 * 184.22914 * 3 2 1 26 26 H 1.09004 * 109.47075 * 304.22813 * 3 2 1 27 27 H 1.08995 * 109.47417 * 64.23260 * 3 2 1 28 28 H 0.97005 * 119.99770 * 179.97438 * 9 8 6 29 29 H 1.09002 * 108.85149 * 56.00292 * 14 4 2 30 30 H 1.08997 * 109.62398 * 95.22473 * 15 14 4 31 31 H 1.08998 * 109.63003 * 334.64211 * 15 14 4 32 32 H 1.09003 * 108.89322 * 159.25500 * 16 15 14 33 33 H 1.09006 * 108.89656 * 40.76303 * 16 15 14 34 34 H 1.09007 * 108.89121 * 182.68869 * 17 16 15 35 35 H 1.08988 * 108.89634 * 301.27733 * 17 16 15 36 36 H 1.09001 * 109.62926 * 39.67773 * 18 17 16 37 37 H 1.09001 * 109.63005 * 160.25561 * 18 17 16 38 38 H 1.09001 * 108.92200 * 333.51197 * 19 18 17 39 39 H 1.09002 * 108.91878 * 215.01863 * 19 18 17 40 40 H 1.09005 * 108.81016 * 318.36796 * 20 14 4 41 41 H 1.09002 * 108.81390 * 76.64044 * 20 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7211 1.2493 5 1 3.0760 -0.4376 1.4351 6 6 1.9571 -2.2110 1.0383 7 1 1.2868 -2.8053 1.6415 8 6 2.7370 -2.8153 0.0752 9 7 2.6141 -4.1039 -0.1571 10 14 3.9680 -1.8037 -0.8999 11 1 5.3036 -1.8955 -0.2572 12 1 4.0494 -2.3261 -2.2876 13 1 3.5296 -0.3852 -0.9300 14 6 1.1801 -0.3277 2.4521 15 6 1.6063 -1.1432 3.6428 16 6 0.3596 -1.4513 4.4970 17 6 -0.0234 -0.3312 5.3438 18 6 -0.4036 0.9192 4.5248 19 6 0.8623 1.6145 4.0998 20 6 1.3234 1.1871 2.6932 21 1 -0.3634 0.6010 0.8335 22 1 -0.3633 0.4213 -0.9373 23 1 -0.3633 -1.0225 0.1039 24 1 1.8934 -0.5138 -0.8900 25 1 3.1273 1.4436 -0.0758 26 1 1.6160 1.9778 -0.8497 27 1 1.7398 1.9341 0.9254 28 1 3.1626 -4.5290 -0.8350 29 1 0.1370 -0.5504 2.2272 30 1 2.3255 -0.5777 4.2352 31 1 2.0584 -2.0757 3.3050 32 1 0.5688 -2.3153 5.1279 33 1 -0.4714 -1.6933 3.8344 34 1 -0.8768 -0.6261 5.9545 35 1 0.8108 -0.0833 5.9999 36 1 -0.9729 0.6211 3.6443 37 1 -1.0011 1.5921 5.1399 38 1 1.6508 1.3816 4.8154 39 1 0.6924 2.6912 4.1032 40 1 2.3696 1.4658 2.5665 41 1 0.7280 1.7191 1.9513 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000167079531.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:17 Heat of formation + Delta-G solvation = -20.320551 kcal Electronic energy + Delta-G solvation = -17188.731826 eV Core-core repulsion = 14874.851938 eV Total energy + Delta-G solvation = -2313.879888 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 224.184 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.19853 -36.03190 -32.43136 -31.61343 -31.15898 -27.71418 -26.49042 -24.24774 -23.89495 -21.79518 -20.05449 -19.12510 -18.06316 -16.38354 -15.37165 -14.85113 -14.41465 -13.87584 -13.66578 -13.29837 -12.75856 -12.73421 -12.58779 -12.47592 -11.79944 -11.51754 -11.33711 -11.03110 -10.93172 -10.80864 -10.52781 -10.28812 -10.16679 -10.04438 -9.82470 -9.71194 -9.48699 -9.38663 -9.27779 -8.67913 -8.58859 -8.36552 -5.97674 -3.93620 3.34590 3.45274 3.49320 4.52497 5.03838 5.17022 5.27122 5.34652 5.67713 5.70691 5.74457 5.84578 5.96361 5.99282 6.03893 6.06059 6.10084 6.13131 6.35463 6.37042 6.47872 6.52658 6.56770 6.60386 6.61536 6.64661 6.68001 6.80549 6.87520 6.90544 6.98974 7.04955 7.23360 7.35581 7.38032 7.58008 7.70010 7.92383 8.64384 9.08381 9.67309 11.15194 Molecular weight = 224.18amu Principal moments of inertia in cm(-1) A = 0.029892 B = 0.010702 C = 0.009028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.474001 B = 2615.797353 C = 3100.638022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.096 4.096 3 C -0.175 4.175 4 C 0.024 3.976 5 H 0.020 0.980 6 C -0.501 4.501 7 H 0.075 0.925 8 C 0.069 3.931 9 N -0.905 5.905 10 Si 0.850 3.150 11 H -0.286 1.286 12 H -0.293 1.293 13 H -0.233 1.233 14 C -0.067 4.067 15 C -0.111 4.111 16 C -0.119 4.119 17 C -0.111 4.111 18 C -0.115 4.115 19 C -0.118 4.118 20 C -0.122 4.122 21 H 0.046 0.954 22 H 0.028 0.972 23 H 0.062 0.938 24 H 0.063 0.937 25 H 0.042 0.958 26 H 0.033 0.967 27 H 0.075 0.925 28 H 0.260 0.740 29 H 0.065 0.935 30 H 0.044 0.956 31 H 0.091 0.909 32 H 0.048 0.952 33 H 0.057 0.943 34 H 0.047 0.953 35 H 0.053 0.947 36 H 0.066 0.934 37 H 0.050 0.950 38 H 0.055 0.945 39 H 0.046 0.954 40 H 0.055 0.945 41 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.827 10.479 6.527 12.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.115 4.115 3 C -0.231 4.231 4 C 0.006 3.994 5 H 0.038 0.962 6 C -0.539 4.539 7 H 0.093 0.907 8 C -0.132 4.132 9 N -0.544 5.544 10 Si 0.678 3.322 11 H -0.213 1.213 12 H -0.220 1.220 13 H -0.156 1.156 14 C -0.086 4.086 15 C -0.149 4.149 16 C -0.157 4.157 17 C -0.148 4.148 18 C -0.153 4.153 19 C -0.156 4.156 20 C -0.159 4.159 21 H 0.065 0.935 22 H 0.047 0.953 23 H 0.081 0.919 24 H 0.082 0.918 25 H 0.061 0.939 26 H 0.052 0.948 27 H 0.093 0.907 28 H 0.070 0.930 29 H 0.084 0.916 30 H 0.063 0.937 31 H 0.110 0.890 32 H 0.067 0.933 33 H 0.076 0.924 34 H 0.065 0.935 35 H 0.071 0.929 36 H 0.085 0.915 37 H 0.069 0.931 38 H 0.074 0.926 39 H 0.065 0.935 40 H 0.074 0.926 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -3.765 10.335 6.412 12.732 hybrid contribution 0.808 0.323 -0.732 1.137 sum -2.958 10.658 5.680 12.434 Atomic orbital electron populations 1.21822 0.96766 1.01768 0.98875 1.21626 0.94938 0.93849 1.01097 1.22586 1.00283 0.98618 1.01652 1.19254 0.94240 0.95817 0.90121 0.96239 1.21058 1.23711 0.90371 1.18740 0.90707 1.24995 0.96890 0.94598 0.96698 1.69925 1.40575 1.10135 1.33758 0.87516 0.81890 0.83381 0.79421 1.21292 1.21966 1.15626 1.20883 1.00562 0.91422 0.95688 1.21499 0.95908 1.01955 0.95500 1.20484 0.99404 0.97144 0.98634 1.20483 1.00116 0.96075 0.98159 1.21330 0.97603 0.96573 0.99783 1.21404 0.97411 0.98559 0.98218 1.22508 1.00459 0.98070 0.94819 0.93493 0.95300 0.91944 0.91843 0.93914 0.94824 0.90681 0.93039 0.91624 0.93731 0.89030 0.93313 0.92427 0.93467 0.92855 0.91527 0.93084 0.92625 0.93528 0.92643 0.91650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.56 7.88 37.16 0.29 -2.26 16 2 C -0.10 -2.00 1.62 -90.61 -0.15 -2.15 16 3 C -0.17 -3.13 8.28 37.16 0.31 -2.82 16 4 C 0.02 0.54 0.81 -91.77 -0.07 0.47 16 5 H 0.02 0.45 6.94 -51.93 -0.36 0.09 16 6 C -0.50 -13.32 7.26 -34.44 -0.25 -13.57 16 7 H 0.07 2.17 7.22 -52.49 -0.38 1.79 16 8 C 0.07 1.94 5.39 -17.82 -0.10 1.84 16 9 N -0.90 -27.51 13.96 55.43 0.77 -26.73 16 10 Si 0.85 20.96 25.69 -169.99 -4.37 16.59 16 11 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 12 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 13 H -0.23 -5.27 3.84 56.52 0.22 -5.05 16 14 C -0.07 -1.25 0.82 -91.33 -0.07 -1.33 16 15 C -0.11 -2.06 4.83 -27.34 -0.13 -2.19 16 16 C -0.12 -1.91 5.26 -29.60 -0.16 -2.07 16 17 C -0.11 -1.51 5.27 -29.60 -0.16 -1.67 16 18 C -0.12 -1.53 5.61 -27.31 -0.15 -1.68 16 19 C -0.12 -1.62 5.32 -27.40 -0.15 -1.76 16 20 C -0.12 -1.93 3.32 -25.62 -0.08 -2.01 16 21 H 0.05 0.80 5.27 -51.93 -0.27 0.52 16 22 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 23 H 0.06 1.29 7.75 -51.93 -0.40 0.89 16 24 H 0.06 1.47 4.47 -51.93 -0.23 1.23 16 25 H 0.04 0.78 7.32 -51.93 -0.38 0.40 16 26 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.07 1.21 3.40 -51.93 -0.18 1.04 16 28 H 0.26 7.52 8.31 -40.82 -0.34 7.19 16 29 H 0.07 1.27 4.62 -51.93 -0.24 1.03 16 30 H 0.04 0.78 6.98 -51.93 -0.36 0.41 16 31 H 0.09 1.99 5.89 -51.93 -0.31 1.69 16 32 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.06 0.97 7.47 -51.93 -0.39 0.58 16 34 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.05 0.70 7.46 -51.94 -0.39 0.32 16 36 H 0.07 0.94 6.96 -51.93 -0.36 0.58 16 37 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.06 0.76 6.63 -51.93 -0.34 0.42 16 39 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.05 0.90 7.16 -51.93 -0.37 0.53 16 41 H 0.07 1.01 4.67 -51.93 -0.24 0.77 16 LS Contribution 276.72 15.07 4.17 4.17 Total: -1.00 -28.13 276.72 -7.36 -35.49 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: -7.06 Total: 1.68 kcal Atomic # 6 Polarization: -30.33 SS G_CDS: -0.87 Total: -31.20 kcal Atomic # 7 Polarization: -27.51 SS G_CDS: 0.77 Total: -26.73 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -4.37 Total: 16.59 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -28.13 -7.36 -35.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000167079531.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.166 kcal (2) G-P(sol) polarization free energy of solvation -28.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds