Wall clock time and date at job start Mon Mar 30 2020 02:35:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.46691 * 2 1 4 4 C 1.53003 * 109.47116 * 119.99359 * 2 1 3 5 5 H 1.08999 * 109.47144 * 199.22538 * 4 2 1 6 6 C 1.50698 * 109.46756 * 79.23107 * 4 2 1 7 7 H 1.08002 * 120.00100 * 245.24419 * 6 4 2 8 8 C 1.37879 * 120.00183 * 65.24223 * 6 4 2 9 9 N 1.31513 * 119.99934 * 183.55563 * 8 6 4 10 10 Si 1.86799 * 119.99855 * 3.55524 * 8 6 4 11 11 H 1.48498 * 109.47069 * 94.69659 * 10 8 6 12 12 H 1.48508 * 109.47215 * 214.69668 * 10 8 6 13 13 H 1.48498 * 109.47161 * 334.69416 * 10 8 6 14 14 C 1.52994 * 109.47351 * 319.22994 * 4 2 1 15 15 C 1.50477 * 108.87584 * 174.56332 * 14 4 2 16 16 C 1.54238 * 108.51910 * 214.93083 * 15 14 4 17 17 C 1.45546 * 112.40817 * 280.00685 * 16 15 14 18 18 C 1.54239 * 112.32541 * 61.98787 * 17 16 15 19 19 C 1.50551 * 108.48332 * 279.88030 * 18 17 16 20 20 C 1.54063 * 108.88050 * 297.54050 * 14 4 2 21 21 H 1.08997 * 109.47434 * 305.79282 * 1 2 3 22 22 H 1.08997 * 109.47128 * 65.79994 * 1 2 3 23 23 H 1.09007 * 109.46723 * 185.80032 * 1 2 3 24 24 H 1.09003 * 109.47556 * 240.00017 * 2 1 3 25 25 H 1.08999 * 109.46881 * 184.22914 * 3 2 1 26 26 H 1.09004 * 109.47075 * 304.22813 * 3 2 1 27 27 H 1.08995 * 109.47417 * 64.23260 * 3 2 1 28 28 H 0.97005 * 119.99770 * 179.97438 * 9 8 6 29 29 H 1.09002 * 108.85149 * 56.00292 * 14 4 2 30 30 H 1.08997 * 109.62398 * 95.22473 * 15 14 4 31 31 H 1.08998 * 109.63003 * 334.64211 * 15 14 4 32 32 H 1.09003 * 108.89322 * 159.25500 * 16 15 14 33 33 H 1.09006 * 108.89656 * 40.76303 * 16 15 14 34 34 H 1.09007 * 108.89121 * 182.68869 * 17 16 15 35 35 H 1.08988 * 108.89634 * 301.27733 * 17 16 15 36 36 H 1.09001 * 109.62926 * 39.67773 * 18 17 16 37 37 H 1.09001 * 109.63005 * 160.25561 * 18 17 16 38 38 H 1.09001 * 108.92200 * 333.51197 * 19 18 17 39 39 H 1.09002 * 108.91878 * 215.01863 * 19 18 17 40 40 H 1.09005 * 108.81016 * 318.36796 * 20 14 4 41 41 H 1.09002 * 108.81390 * 76.64044 * 20 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7211 1.2493 5 1 3.0760 -0.4376 1.4351 6 6 1.9571 -2.2110 1.0383 7 1 1.2868 -2.8053 1.6415 8 6 2.7370 -2.8153 0.0752 9 7 2.6141 -4.1039 -0.1571 10 14 3.9680 -1.8037 -0.8999 11 1 5.3036 -1.8955 -0.2572 12 1 4.0494 -2.3261 -2.2876 13 1 3.5296 -0.3852 -0.9300 14 6 1.1801 -0.3277 2.4521 15 6 1.6063 -1.1432 3.6428 16 6 0.3596 -1.4513 4.4970 17 6 -0.0234 -0.3312 5.3438 18 6 -0.4036 0.9192 4.5248 19 6 0.8623 1.6145 4.0998 20 6 1.3234 1.1871 2.6932 21 1 -0.3634 0.6010 0.8335 22 1 -0.3633 0.4213 -0.9373 23 1 -0.3633 -1.0225 0.1039 24 1 1.8934 -0.5138 -0.8900 25 1 3.1273 1.4436 -0.0758 26 1 1.6160 1.9778 -0.8497 27 1 1.7398 1.9341 0.9254 28 1 3.1626 -4.5290 -0.8350 29 1 0.1370 -0.5504 2.2272 30 1 2.3255 -0.5777 4.2352 31 1 2.0584 -2.0757 3.3050 32 1 0.5688 -2.3153 5.1279 33 1 -0.4714 -1.6933 3.8344 34 1 -0.8768 -0.6261 5.9545 35 1 0.8108 -0.0833 5.9999 36 1 -0.9729 0.6211 3.6443 37 1 -1.0011 1.5921 5.1399 38 1 1.6508 1.3816 4.8154 39 1 0.6924 2.6912 4.1032 40 1 2.3696 1.4658 2.5665 41 1 0.7280 1.7191 1.9513 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000167079531.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:16 Heat of formation + Delta-G solvation = -35.441548 kcal Electronic energy + Delta-G solvation = -17189.387521 eV Core-core repulsion = 14874.851938 eV Total energy + Delta-G solvation = -2314.535584 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 224.184 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.64104 -37.47690 -34.39355 -33.05646 -32.54357 -29.46519 -28.00460 -25.67883 -25.34430 -23.45670 -21.28468 -20.72661 -19.54115 -18.39502 -17.02058 -16.23018 -16.00023 -15.19759 -14.99887 -14.89422 -14.67907 -14.29126 -14.10293 -13.76889 -13.11290 -13.01540 -12.95228 -12.66308 -12.38883 -12.30730 -12.17584 -11.94324 -11.48021 -11.41724 -11.33400 -11.26224 -11.04429 -10.89914 -10.72951 -10.58445 -10.47215 -10.13546 -8.18868 -6.16720 1.34590 1.40431 1.50581 2.43121 3.18041 3.86869 3.96833 4.14537 4.34497 4.36712 4.42788 4.50443 4.52653 4.60314 4.65429 4.72138 4.77630 4.94743 5.03504 5.05622 5.09513 5.13867 5.22369 5.26558 5.32118 5.35403 5.41735 5.45720 5.46333 5.53240 5.55072 5.64916 5.70381 5.71696 5.76785 5.90643 5.95592 6.06587 6.48764 6.90358 7.46778 8.97552 Molecular weight = 224.18amu Principal moments of inertia in cm(-1) A = 0.029892 B = 0.010702 C = 0.009028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.474001 B = 2615.797353 C = 3100.638022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.101 4.101 3 C -0.170 4.170 4 C 0.024 3.976 5 H 0.013 0.987 6 C -0.485 4.485 7 H 0.034 0.966 8 C 0.005 3.995 9 N -0.959 5.959 10 Si 0.907 3.093 11 H -0.290 1.290 12 H -0.301 1.301 13 H -0.197 1.197 14 C -0.061 4.061 15 C -0.110 4.110 16 C -0.112 4.112 17 C -0.110 4.110 18 C -0.115 4.115 19 C -0.115 4.115 20 C -0.117 4.117 21 H 0.069 0.931 22 H 0.048 0.952 23 H 0.030 0.970 24 H 0.037 0.963 25 H 0.039 0.961 26 H 0.053 0.947 27 H 0.096 0.904 28 H 0.257 0.743 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.045 0.955 32 H 0.046 0.954 33 H 0.042 0.958 34 H 0.063 0.937 35 H 0.062 0.938 36 H 0.055 0.945 37 H 0.076 0.924 38 H 0.056 0.944 39 H 0.071 0.929 40 H 0.055 0.945 41 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.264 14.244 7.353 16.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.120 4.120 3 C -0.227 4.227 4 C 0.005 3.995 5 H 0.031 0.969 6 C -0.523 4.523 7 H 0.052 0.948 8 C -0.190 4.190 9 N -0.601 5.601 10 Si 0.733 3.267 11 H -0.217 1.217 12 H -0.228 1.228 13 H -0.119 1.119 14 C -0.079 4.079 15 C -0.148 4.148 16 C -0.150 4.150 17 C -0.147 4.147 18 C -0.152 4.152 19 C -0.153 4.153 20 C -0.154 4.154 21 H 0.088 0.912 22 H 0.067 0.933 23 H 0.049 0.951 24 H 0.055 0.945 25 H 0.058 0.942 26 H 0.072 0.928 27 H 0.114 0.886 28 H 0.066 0.934 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.061 0.939 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.074 0.926 37 H 0.094 0.906 38 H 0.075 0.925 39 H 0.089 0.911 40 H 0.074 0.926 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -4.213 14.131 7.253 16.433 hybrid contribution 0.879 -0.943 -0.915 1.581 sum -3.333 13.188 6.338 15.007 Atomic orbital electron populations 1.21750 0.95462 1.00469 1.00937 1.21550 0.96194 0.95646 0.98603 1.22537 1.00065 0.96264 1.03789 1.19257 0.94756 0.92660 0.92857 0.96930 1.21359 1.21401 0.92929 1.16658 0.94764 1.25822 0.99276 0.95506 0.98394 1.70090 1.42486 1.12241 1.35286 0.86617 0.79034 0.83851 0.77187 1.21667 1.22796 1.11895 1.20786 0.99058 0.94076 0.93986 1.21393 0.97204 0.99885 0.96274 1.20419 0.97568 0.98608 0.98367 1.20455 1.01107 0.95283 0.97901 1.21342 0.97648 0.96547 0.99676 1.21383 0.97487 1.00044 0.96356 1.22424 1.00905 0.95018 0.97069 0.91239 0.93295 0.95070 0.94459 0.94224 0.92800 0.88585 0.93404 0.92505 0.92443 0.93627 0.93479 0.93924 0.91830 0.91953 0.92610 0.90583 0.92534 0.91060 0.92591 0.90528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.65 7.88 71.98 0.57 -4.09 16 2 C -0.10 -4.02 1.62 -10.79 -0.02 -4.03 16 3 C -0.17 -5.40 8.28 71.98 0.60 -4.80 16 4 C 0.02 1.03 0.81 -11.54 -0.01 1.02 16 5 H 0.01 0.57 6.94 -2.39 -0.02 0.56 16 6 C -0.49 -26.95 7.26 25.60 0.19 -26.77 16 7 H 0.03 2.13 7.22 -2.91 -0.02 2.11 16 8 C 0.00 0.29 5.39 84.66 0.46 0.75 16 9 N -0.96 -61.41 13.96 21.45 0.30 -61.11 16 10 Si 0.91 44.18 25.69 68.60 1.76 45.94 16 11 H -0.29 -14.16 7.11 99.48 0.71 -13.45 16 12 H -0.30 -14.96 7.11 99.48 0.71 -14.25 16 13 H -0.20 -8.41 3.84 99.48 0.38 -8.03 16 14 C -0.06 -2.21 0.82 -11.25 -0.01 -2.22 16 15 C -0.11 -4.09 4.83 30.20 0.15 -3.94 16 16 C -0.11 -3.55 5.26 28.74 0.15 -3.40 16 17 C -0.11 -2.70 5.27 28.74 0.15 -2.55 16 18 C -0.11 -2.59 5.61 30.22 0.17 -2.42 16 19 C -0.12 -2.64 5.32 30.16 0.16 -2.48 16 20 C -0.12 -3.30 3.32 31.31 0.10 -3.19 16 21 H 0.07 2.16 5.27 -2.39 -0.01 2.15 16 22 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 23 H 0.03 1.29 7.75 -2.38 -0.02 1.27 16 24 H 0.04 1.67 4.47 -2.39 -0.01 1.66 16 25 H 0.04 1.28 7.32 -2.39 -0.02 1.26 16 26 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 27 H 0.10 2.65 3.40 -2.39 -0.01 2.64 16 28 H 0.26 15.70 8.31 -92.70 -0.77 14.93 16 29 H 0.06 2.16 4.62 -2.39 -0.01 2.15 16 30 H 0.06 1.94 6.98 -2.39 -0.02 1.93 16 31 H 0.04 2.09 5.89 -2.39 -0.01 2.08 16 32 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.04 1.45 7.47 -2.38 -0.02 1.44 16 34 H 0.06 1.38 8.14 -2.38 -0.02 1.36 16 35 H 0.06 1.44 7.46 -2.39 -0.02 1.43 16 36 H 0.06 1.40 6.96 -2.39 -0.02 1.38 16 37 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.06 1.31 6.63 -2.39 -0.02 1.29 16 39 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 40 H 0.06 1.60 7.16 -2.38 -0.02 1.58 16 41 H 0.08 2.00 4.67 -2.39 -0.01 1.99 16 Total: -1.00 -64.05 276.72 5.38 -58.67 By element: Atomic # 1 Polarization: 13.97 SS G_CDS: 0.67 Total: 14.63 kcal Atomic # 6 Polarization: -60.78 SS G_CDS: 2.65 Total: -58.13 kcal Atomic # 7 Polarization: -61.41 SS G_CDS: 0.30 Total: -61.11 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 1.76 Total: 45.94 kcal Total: -64.05 5.38 -58.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000167079531.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.230 kcal (2) G-P(sol) polarization free energy of solvation -64.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds