Wall clock time and date at job start Mon Mar 30 2020 03:14:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 119.99719 * 2 1 4 4 H 1.48501 * 109.47051 * 265.72327 * 3 2 1 5 5 H 1.48498 * 109.47340 * 25.72191 * 3 2 1 6 6 H 1.48500 * 109.47118 * 145.72227 * 3 2 1 7 7 C 1.37879 * 120.00177 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99925 * 353.36060 * 7 2 1 9 9 C 1.50701 * 119.99959 * 173.36544 * 7 2 1 10 10 H 1.09009 * 109.47024 * 355.26442 * 9 7 2 11 11 C 1.53001 * 109.47062 * 235.26674 * 9 7 2 12 12 N 1.46898 * 109.47012 * 64.87174 * 11 9 7 13 13 C 1.50701 * 109.47126 * 115.26319 * 9 7 2 14 14 C 1.38236 * 119.98781 * 240.00243 * 13 9 7 15 15 C 1.38214 * 120.01803 * 180.02562 * 14 13 9 16 16 C 1.38355 * 119.98182 * 0.25496 * 15 14 13 17 17 Cl 1.73601 * 120.01524 * 179.69642 * 16 15 14 18 18 C 1.38359 * 119.97254 * 359.46629 * 16 15 14 19 19 C 1.38215 * 119.98301 * 0.55606 * 18 16 15 20 20 H 0.97001 * 120.00246 * 0.02562 * 1 2 3 21 21 H 1.08999 * 109.46582 * 184.87176 * 11 9 7 22 22 H 1.08996 * 109.46707 * 304.86740 * 11 9 7 23 23 H 1.00905 * 110.99320 * 178.08516 * 12 11 9 24 24 H 1.00902 * 110.99903 * 302.02945 * 12 11 9 25 25 H 1.08003 * 119.99337 * 359.97438 * 14 13 9 26 26 H 1.08000 * 120.01070 * 179.97438 * 15 14 13 27 27 H 1.08000 * 120.00609 * 180.25830 * 18 16 15 28 28 H 1.07999 * 119.99050 * 179.72447 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.5869 1.9943 -1.3962 5 1 1.4042 2.6771 0.6076 6 1 3.4985 1.4681 0.7885 7 6 2.0046 -1.1940 0.0005 8 1 1.4700 -2.1262 0.1091 9 6 3.5040 -1.1984 -0.1503 10 1 3.8540 -0.1819 -0.3305 11 6 3.8952 -2.0894 -1.3309 12 7 3.3784 -1.5067 -2.5764 13 6 4.1341 -1.7304 1.1111 14 6 5.0078 -0.9396 1.8337 15 6 5.5865 -1.4270 2.9903 16 6 5.2953 -2.7088 3.4220 17 17 6.0278 -3.3248 4.8703 18 6 4.4163 -3.4979 2.7014 19 6 3.8387 -3.0093 1.5447 20 1 -0.4850 0.8400 -0.0004 21 1 4.9813 -2.1620 -1.3870 22 1 3.4713 -3.0839 -1.1917 23 1 3.6504 -2.0606 -3.3748 24 1 2.3760 -1.3982 -2.5362 25 1 5.2389 0.0593 1.4939 26 1 6.2694 -0.8092 3.5545 27 1 4.1854 -4.4970 3.0402 28 1 3.1560 -3.6267 0.9798 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000168181514.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:36 Heat of formation + Delta-G solvation = 2.702393 kcal Electronic energy + Delta-G solvation = -13135.297025 eV Core-core repulsion = 10790.199457 eV Total energy + Delta-G solvation = -2345.097568 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.062 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.94029 -36.32235 -35.06221 -32.27193 -31.02491 -30.53821 -27.42237 -24.29074 -22.48528 -21.80991 -19.44908 -17.10641 -16.66033 -15.21199 -14.89119 -14.57739 -14.02710 -13.82109 -13.07551 -12.99146 -12.71517 -12.49193 -12.10242 -11.61475 -11.18975 -11.15289 -10.92476 -10.53004 -10.40394 -9.88820 -9.80985 -9.28093 -8.66335 -8.51686 -7.89530 -7.81789 -6.20022 -4.20987 1.76104 1.82894 2.49570 3.30087 3.35496 3.37327 4.22994 4.36529 5.10596 5.26242 5.32095 5.46558 5.82888 5.90167 5.96354 6.17311 6.19549 6.35477 6.46566 6.65014 6.70913 6.85886 6.97300 7.34197 7.43480 7.60319 8.00664 8.29153 8.37999 8.82725 9.42708 10.91624 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.032392 B = 0.008337 C = 0.007675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.194393 B = 3357.520377 C = 3647.379999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.080 3.920 3 Si 0.879 3.121 4 H -0.269 1.269 5 H -0.293 1.293 6 H -0.267 1.267 7 C -0.509 4.509 8 H 0.074 0.926 9 C 0.040 3.960 10 H 0.054 0.946 11 C 0.081 3.919 12 N -0.849 5.849 13 C -0.025 4.025 14 C -0.124 4.124 15 C -0.111 4.111 16 C -0.059 4.059 17 Cl -0.097 7.097 18 C -0.113 4.113 19 C -0.098 4.098 20 H 0.266 0.734 21 H 0.044 0.956 22 H 0.017 0.983 23 H 0.321 0.679 24 H 0.355 0.645 25 H 0.123 0.877 26 H 0.122 0.878 27 H 0.122 0.878 28 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.624 -4.308 3.000 10.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.123 4.123 3 Si 0.707 3.293 4 H -0.194 1.194 5 H -0.219 1.219 6 H -0.192 1.192 7 C -0.546 4.546 8 H 0.092 0.908 9 C 0.021 3.979 10 H 0.072 0.928 11 C -0.050 4.050 12 N -0.379 5.379 13 C -0.027 4.027 14 C -0.142 4.142 15 C -0.130 4.130 16 C -0.086 4.086 17 Cl -0.069 7.069 18 C -0.131 4.131 19 C -0.116 4.116 20 H 0.076 0.924 21 H 0.062 0.938 22 H 0.035 0.965 23 H 0.131 0.869 24 H 0.170 0.830 25 H 0.141 0.859 26 H 0.140 0.860 27 H 0.140 0.860 28 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 9.940 -3.606 3.316 11.082 hybrid contribution -0.196 -0.017 0.259 0.325 sum 9.744 -3.623 3.575 10.993 Atomic orbital electron populations 1.69896 1.06401 1.27349 1.49217 1.25065 0.94661 0.99093 0.93514 0.86809 0.79959 0.83365 0.79163 1.19438 1.21913 1.19169 1.20800 0.87972 0.94758 1.51054 0.90801 1.18418 0.96552 0.95847 0.87085 0.92824 1.21749 0.96634 0.95614 0.91023 1.58687 1.20112 1.55500 1.03577 1.20780 0.90915 0.92606 0.98362 1.21097 0.97867 1.00170 0.95098 1.20895 1.00980 0.93863 0.97248 1.20701 1.01513 0.95611 0.90732 1.98312 1.82564 1.87853 1.38137 1.20963 0.97041 0.99577 0.95559 1.20949 0.98997 0.96219 0.95454 0.92423 0.93798 0.96512 0.86861 0.82979 0.85930 0.86021 0.85953 0.85441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.83 13.96 55.43 0.77 -25.06 15 2 C 0.08 2.17 5.47 -17.82 -0.10 2.08 15 3 Si 0.88 21.04 26.93 -169.99 -4.58 16.46 15 4 H -0.27 -6.40 7.11 56.52 0.40 -6.00 15 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 15 6 H -0.27 -6.10 6.63 56.52 0.37 -5.73 15 7 C -0.51 -13.06 7.54 -34.44 -0.26 -13.32 15 8 H 0.07 2.06 8.06 -52.49 -0.42 1.64 15 9 C 0.04 0.88 2.09 -92.92 -0.19 0.69 15 10 H 0.05 1.23 4.59 -51.92 -0.24 0.99 15 11 C 0.08 1.56 5.97 -3.82 -0.02 1.54 15 12 N -0.85 -15.96 9.61 -10.37 -0.10 -16.06 15 13 C -0.03 -0.51 4.77 -104.62 -0.50 -1.01 15 14 C -0.12 -2.31 9.67 -39.59 -0.38 -2.69 15 15 C -0.11 -1.85 9.83 -39.55 -0.39 -2.24 15 16 C -0.06 -0.98 6.32 -39.49 -0.25 -1.23 15 17 Cl -0.10 -1.39 28.96 -51.86 -1.50 -2.90 15 18 C -0.11 -1.88 9.83 -39.55 -0.39 -2.27 15 19 C -0.10 -1.82 8.86 -39.59 -0.35 -2.17 15 20 H 0.27 7.31 8.31 -40.82 -0.34 6.97 15 21 H 0.04 0.79 8.14 -51.93 -0.42 0.36 15 22 H 0.02 0.32 7.56 -51.93 -0.39 -0.08 15 23 H 0.32 4.96 9.08 -39.29 -0.36 4.60 15 24 H 0.36 7.28 8.12 -39.29 -0.32 6.97 15 25 H 0.12 2.20 7.75 -52.48 -0.41 1.80 15 26 H 0.12 1.74 8.06 -52.49 -0.42 1.32 15 27 H 0.12 1.76 8.06 -52.49 -0.42 1.34 15 28 H 0.13 2.32 7.63 -52.49 -0.40 1.92 15 LS Contribution 256.00 15.07 3.86 3.86 Total: -1.00 -27.54 256.00 -7.35 -34.89 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: -2.97 Total: 9.43 kcal Atomic # 6 Polarization: -17.79 SS G_CDS: -2.83 Total: -20.62 kcal Atomic # 7 Polarization: -41.79 SS G_CDS: 0.67 Total: -41.12 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -4.58 Total: 16.46 kcal Atomic # 17 Polarization: -1.39 SS G_CDS: -1.50 Total: -2.90 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -27.54 -7.35 -34.89 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000168181514.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.591 kcal (2) G-P(sol) polarization free energy of solvation -27.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.888 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds