Wall clock time and date at job start Mon Mar 30 2020 03:14:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 119.99719 * 2 1 4 4 H 1.48501 * 109.47051 * 265.72327 * 3 2 1 5 5 H 1.48498 * 109.47340 * 25.72191 * 3 2 1 6 6 H 1.48500 * 109.47118 * 145.72227 * 3 2 1 7 7 C 1.37879 * 120.00177 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99925 * 353.36060 * 7 2 1 9 9 C 1.50701 * 119.99959 * 173.36544 * 7 2 1 10 10 H 1.09009 * 109.47024 * 355.26442 * 9 7 2 11 11 C 1.53001 * 109.47062 * 235.26674 * 9 7 2 12 12 N 1.46898 * 109.47012 * 64.87174 * 11 9 7 13 13 C 1.50701 * 109.47126 * 115.26319 * 9 7 2 14 14 C 1.38236 * 119.98781 * 240.00243 * 13 9 7 15 15 C 1.38214 * 120.01803 * 180.02562 * 14 13 9 16 16 C 1.38355 * 119.98182 * 0.25496 * 15 14 13 17 17 Cl 1.73601 * 120.01524 * 179.69642 * 16 15 14 18 18 C 1.38359 * 119.97254 * 359.46629 * 16 15 14 19 19 C 1.38215 * 119.98301 * 0.55606 * 18 16 15 20 20 H 0.97001 * 120.00246 * 0.02562 * 1 2 3 21 21 H 1.08999 * 109.46582 * 184.87176 * 11 9 7 22 22 H 1.08996 * 109.46707 * 304.86740 * 11 9 7 23 23 H 1.00905 * 110.99320 * 178.08516 * 12 11 9 24 24 H 1.00902 * 110.99903 * 302.02945 * 12 11 9 25 25 H 1.08003 * 119.99337 * 359.97438 * 14 13 9 26 26 H 1.08000 * 120.01070 * 179.97438 * 15 14 13 27 27 H 1.08000 * 120.00609 * 180.25830 * 18 16 15 28 28 H 1.07999 * 119.99050 * 179.72447 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.5869 1.9943 -1.3962 5 1 1.4042 2.6771 0.6076 6 1 3.4985 1.4681 0.7885 7 6 2.0046 -1.1940 0.0005 8 1 1.4700 -2.1262 0.1091 9 6 3.5040 -1.1984 -0.1503 10 1 3.8540 -0.1819 -0.3305 11 6 3.8952 -2.0894 -1.3309 12 7 3.3784 -1.5067 -2.5764 13 6 4.1341 -1.7304 1.1111 14 6 5.0078 -0.9396 1.8337 15 6 5.5865 -1.4270 2.9903 16 6 5.2953 -2.7088 3.4220 17 17 6.0278 -3.3248 4.8703 18 6 4.4163 -3.4979 2.7014 19 6 3.8387 -3.0093 1.5447 20 1 -0.4850 0.8400 -0.0004 21 1 4.9813 -2.1620 -1.3870 22 1 3.4713 -3.0839 -1.1917 23 1 3.6504 -2.0606 -3.3748 24 1 2.3760 -1.3982 -2.5362 25 1 5.2389 0.0593 1.4939 26 1 6.2694 -0.8092 3.5545 27 1 4.1854 -4.4970 3.0402 28 1 3.1560 -3.6267 0.9798 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000168181514.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:36 Heat of formation + Delta-G solvation = -14.573653 kcal Electronic energy + Delta-G solvation = -13136.046170 eV Core-core repulsion = 10790.199457 eV Total energy + Delta-G solvation = -2345.846714 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.062 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.36015 -37.64417 -36.59802 -34.21260 -32.56320 -31.90498 -29.07857 -26.10396 -23.90443 -23.24567 -21.09461 -19.05855 -18.02925 -16.71214 -16.45886 -16.31148 -15.55301 -15.30307 -14.63855 -14.46472 -14.31171 -13.95442 -13.73807 -13.35814 -12.85887 -12.51958 -12.46511 -12.01027 -11.81365 -11.73637 -11.48495 -11.12687 -10.69317 -9.88202 -9.40008 -9.28177 -8.27198 -6.29408 0.36376 0.45707 1.22135 1.39609 1.42353 1.47896 2.38434 2.81093 3.12737 3.85476 3.98992 4.05251 4.33614 4.46952 4.54622 4.65209 4.73662 4.92053 5.03414 5.08297 5.23191 5.34312 5.50742 5.64149 5.86083 5.99370 6.31329 6.45646 6.72724 6.89647 7.36765 8.88078 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.032392 B = 0.008337 C = 0.007675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.194393 B = 3357.520377 C = 3647.379999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.028 3.972 3 Si 0.931 3.069 4 H -0.266 1.266 5 H -0.298 1.298 6 H -0.249 1.249 7 C -0.494 4.494 8 H 0.039 0.961 9 C 0.042 3.958 10 H 0.046 0.954 11 C 0.086 3.914 12 N -0.853 5.853 13 C -0.051 4.051 14 C -0.133 4.133 15 C -0.107 4.107 16 C -0.059 4.059 17 Cl -0.073 7.073 18 C -0.110 4.110 19 C -0.108 4.108 20 H 0.264 0.736 21 H 0.063 0.937 22 H 0.017 0.983 23 H 0.341 0.659 24 H 0.344 0.656 25 H 0.128 0.872 26 H 0.149 0.851 27 H 0.145 0.855 28 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.885 -4.439 3.893 13.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.170 4.170 3 Si 0.757 3.243 4 H -0.191 1.191 5 H -0.225 1.225 6 H -0.172 1.172 7 C -0.531 4.531 8 H 0.057 0.943 9 C 0.022 3.978 10 H 0.064 0.936 11 C -0.045 4.045 12 N -0.383 5.383 13 C -0.052 4.052 14 C -0.151 4.151 15 C -0.125 4.125 16 C -0.086 4.086 17 Cl -0.045 7.045 18 C -0.128 4.128 19 C -0.127 4.127 20 H 0.073 0.927 21 H 0.082 0.918 22 H 0.035 0.965 23 H 0.154 0.846 24 H 0.157 0.843 25 H 0.146 0.854 26 H 0.166 0.834 27 H 0.163 0.837 28 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 12.246 -3.759 4.203 13.481 hybrid contribution -0.823 -0.125 0.048 0.834 sum 11.422 -3.884 4.251 12.792 Atomic orbital electron populations 1.70025 1.08037 1.27887 1.52204 1.25745 0.95139 1.02231 0.93905 0.85975 0.79352 0.79609 0.79395 1.19133 1.22495 1.17249 1.20926 0.90152 0.93030 1.49017 0.94297 1.18347 0.93959 0.96195 0.89270 0.93627 1.21665 0.97738 0.94941 0.90196 1.58671 1.19149 1.56193 1.04332 1.20630 0.92819 0.93785 0.97987 1.21205 0.97943 1.00273 0.95698 1.21148 1.00643 0.94185 0.96549 1.20864 1.00889 0.95559 0.91269 1.98326 1.82034 1.87546 1.36561 1.21172 0.96381 1.00594 0.94672 1.20962 0.99389 0.95907 0.96424 0.92669 0.91822 0.96526 0.84640 0.84302 0.85431 0.83368 0.83711 0.86032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.20 13.96 21.45 0.30 -55.90 15 2 C 0.03 1.55 5.47 84.66 0.46 2.01 15 3 Si 0.93 43.33 26.93 68.60 1.85 45.18 15 4 H -0.27 -12.17 7.11 99.48 0.71 -11.46 15 5 H -0.30 -14.02 7.11 99.48 0.71 -13.31 15 6 H -0.25 -10.70 6.63 99.48 0.66 -10.04 15 7 C -0.49 -25.77 7.54 25.60 0.19 -25.57 15 8 H 0.04 2.26 8.06 -2.91 -0.02 2.23 15 9 C 0.04 1.79 2.09 -12.29 -0.03 1.77 15 10 H 0.05 2.03 4.59 -2.38 -0.01 2.02 15 11 C 0.09 3.22 5.97 86.30 0.52 3.74 15 12 N -0.85 -31.25 9.61 -186.73 -1.79 -33.04 15 13 C -0.05 -2.00 4.77 -19.87 -0.09 -2.09 15 14 C -0.13 -4.66 9.67 22.26 0.22 -4.44 15 15 C -0.11 -3.22 9.83 22.29 0.22 -3.01 15 16 C -0.06 -1.77 6.32 22.33 0.14 -1.63 15 17 Cl -0.07 -1.86 28.96 -2.72 -0.08 -1.93 15 18 C -0.11 -3.40 9.83 22.29 0.22 -3.18 15 19 C -0.11 -3.92 8.86 22.26 0.20 -3.72 15 20 H 0.26 15.00 8.31 -92.71 -0.77 14.23 15 21 H 0.06 2.15 8.14 -2.39 -0.02 2.13 15 22 H 0.02 0.62 7.56 -2.39 -0.02 0.60 15 23 H 0.34 10.03 9.08 -89.69 -0.81 9.21 15 24 H 0.34 14.12 8.12 -89.69 -0.73 13.40 15 25 H 0.13 4.27 7.75 -2.91 -0.02 4.25 15 26 H 0.15 3.64 8.06 -2.91 -0.02 3.62 15 27 H 0.15 3.77 8.06 -2.91 -0.02 3.74 15 28 H 0.12 4.44 7.63 -2.91 -0.02 4.42 15 Total: -1.00 -58.71 256.00 1.91 -56.80 By element: Atomic # 1 Polarization: 25.43 SS G_CDS: -0.40 Total: 25.03 kcal Atomic # 6 Polarization: -38.17 SS G_CDS: 2.04 Total: -36.13 kcal Atomic # 7 Polarization: -87.45 SS G_CDS: -1.49 Total: -88.95 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 1.85 Total: 45.18 kcal Atomic # 17 Polarization: -1.86 SS G_CDS: -0.08 Total: -1.93 kcal Total: -58.71 1.91 -56.80 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000168181514.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.226 kcal (2) G-P(sol) polarization free energy of solvation -58.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds