Wall clock time and date at job start Mon Mar 30 2020 03:14:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86798 * 120.00203 * 2 1 4 4 H 1.48501 * 109.47168 * 264.85347 * 3 2 1 5 5 H 1.48496 * 109.46956 * 24.85131 * 3 2 1 6 6 H 1.48501 * 109.47518 * 144.85701 * 3 2 1 7 7 C 1.37879 * 120.00236 * 180.02562 * 2 1 3 8 8 H 1.08010 * 119.99841 * 4.79246 * 7 2 1 9 9 C 1.50699 * 120.00356 * 184.79522 * 7 2 1 10 10 H 1.08995 * 109.46989 * 335.03986 * 9 7 2 11 11 C 1.53001 * 109.47078 * 95.03351 * 9 7 2 12 12 N 1.46898 * 109.47198 * 185.45966 * 11 9 7 13 13 C 1.50700 * 109.47355 * 215.03715 * 9 7 2 14 14 C 1.38243 * 119.98756 * 119.99804 * 13 9 7 15 15 C 1.38208 * 120.00948 * 179.97438 * 14 13 9 16 16 C 1.38349 * 119.99241 * 0.02562 * 15 14 13 17 17 Cl 1.73598 * 120.01473 * 180.02562 * 16 15 14 18 18 C 1.38358 * 119.97187 * 0.27753 * 16 15 14 19 19 C 1.38215 * 119.98446 * 359.40034 * 18 16 15 20 20 H 0.96997 * 120.00074 * 0.02562 * 1 2 3 21 21 H 1.08996 * 109.47531 * 305.46435 * 11 9 7 22 22 H 1.09009 * 109.46891 * 65.46348 * 11 9 7 23 23 H 1.00898 * 111.00053 * 180.02562 * 12 11 9 24 24 H 1.00903 * 111.00030 * 303.95629 * 12 11 9 25 25 H 1.07995 * 119.99260 * 0.02562 * 14 13 9 26 26 H 1.08003 * 120.00490 * 180.02562 * 15 14 13 27 27 H 1.07997 * 120.00598 * 179.72227 * 18 16 15 28 28 H 1.07994 * 119.99445 * 180.31859 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.6054 1.9836 -1.3944 5 1 1.3965 2.6816 0.5884 6 1 3.4882 1.4740 0.8059 7 6 2.0045 -1.1940 -0.0005 8 1 1.4673 -2.1278 -0.0791 9 6 3.5076 -1.1964 0.1086 10 1 3.8999 -0.2478 -0.2579 11 6 3.9124 -1.3844 1.5720 12 7 5.3704 -1.2563 1.6971 13 6 4.0694 -2.3250 -0.7170 14 6 4.9420 -2.0543 -1.7545 15 6 5.4580 -3.0890 -2.5117 16 6 5.1007 -4.3959 -2.2315 17 17 5.7490 -5.6961 -3.1817 18 6 4.2225 -4.6658 -1.1970 19 6 3.7123 -3.6307 -0.4363 20 1 -0.4850 0.8400 -0.0004 21 1 3.4270 -0.6240 2.1838 22 1 3.6043 -2.3739 1.9100 23 1 5.6631 -1.3769 2.6551 24 1 5.8441 -1.9081 1.0897 25 1 5.2211 -1.0341 -1.9729 26 1 6.1400 -2.8774 -3.3219 27 1 3.9398 -5.6854 -0.9807 28 1 3.0308 -3.8416 0.3745 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000168181610.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:38 Heat of formation + Delta-G solvation = 3.529667 kcal Electronic energy + Delta-G solvation = -13138.423985 eV Core-core repulsion = 10793.362291 eV Total energy + Delta-G solvation = -2345.061695 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.062 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.04827 -36.38818 -35.06763 -32.47092 -30.86108 -30.59844 -27.85082 -23.76920 -22.63788 -22.09690 -19.49192 -17.06165 -16.65424 -15.50549 -14.81716 -14.79444 -13.93616 -13.75200 -13.32166 -13.03808 -13.00990 -12.51887 -11.84890 -11.63583 -11.39036 -11.14015 -10.83475 -10.51399 -10.38542 -9.91903 -9.86173 -9.36389 -8.64737 -8.57335 -8.09667 -7.89976 -6.18795 -4.20901 1.69904 1.76825 2.44939 3.26339 3.35150 3.42207 4.17123 4.35440 5.06646 5.22546 5.27401 5.37903 5.64044 5.84157 5.90745 6.08639 6.24978 6.35584 6.44053 6.65842 6.72021 6.81738 7.05514 7.30433 7.41067 7.54069 7.78723 7.98285 8.38694 8.85147 9.42218 10.93124 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.036570 B = 0.007782 C = 0.007388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.481195 B = 3597.003532 C = 3788.788799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.076 3.924 3 Si 0.871 3.129 4 H -0.275 1.275 5 H -0.289 1.289 6 H -0.254 1.254 7 C -0.513 4.513 8 H 0.077 0.923 9 C 0.047 3.953 10 H 0.051 0.949 11 C 0.068 3.932 12 N -0.857 5.857 13 C -0.022 4.022 14 C -0.117 4.117 15 C -0.111 4.111 16 C -0.058 4.058 17 Cl -0.096 7.096 18 C -0.113 4.113 19 C -0.104 4.104 20 H 0.266 0.734 21 H 0.068 0.932 22 H 0.019 0.981 23 H 0.326 0.674 24 H 0.331 0.669 25 H 0.125 0.875 26 H 0.123 0.877 27 H 0.123 0.877 28 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.527 -6.328 -1.527 12.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.127 4.127 3 Si 0.697 3.303 4 H -0.201 1.201 5 H -0.215 1.215 6 H -0.178 1.178 7 C -0.551 4.551 8 H 0.095 0.905 9 C 0.027 3.973 10 H 0.069 0.931 11 C -0.062 4.062 12 N -0.385 5.385 13 C -0.022 4.022 14 C -0.135 4.135 15 C -0.130 4.130 16 C -0.084 4.084 17 Cl -0.067 7.067 18 C -0.131 4.131 19 C -0.122 4.122 20 H 0.076 0.924 21 H 0.086 0.914 22 H 0.038 0.962 23 H 0.137 0.863 24 H 0.143 0.857 25 H 0.143 0.857 26 H 0.141 0.859 27 H 0.141 0.859 28 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 10.279 -5.573 -1.872 11.841 hybrid contribution 0.236 -0.241 0.129 0.361 sum 10.515 -5.814 -1.743 12.141 Atomic orbital electron populations 1.69887 1.06376 1.27321 1.49335 1.25049 0.94721 0.99080 0.93827 0.86929 0.80774 0.83369 0.79219 1.20063 1.21549 1.17777 1.20864 0.87748 0.94935 1.51537 0.90497 1.18394 0.96533 0.92426 0.89926 0.93121 1.22283 0.85472 0.98854 0.99586 1.58951 1.08168 1.60189 1.11197 1.20543 0.91442 0.95602 0.94618 1.21083 0.97915 0.98580 0.95945 1.20915 1.00982 0.90762 1.00333 1.20723 1.01966 0.88514 0.97181 1.98318 1.85860 1.50213 1.72334 1.20967 0.97244 0.99821 0.95099 1.21028 0.99373 0.91856 0.99969 0.92391 0.91378 0.96232 0.86313 0.85694 0.85695 0.85907 0.85939 0.85308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.25 13.96 55.43 0.77 -25.48 15 2 C 0.08 2.10 5.47 -17.82 -0.10 2.01 15 3 Si 0.87 20.76 26.99 -169.99 -4.59 16.17 15 4 H -0.27 -6.50 7.11 56.52 0.40 -6.10 15 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 15 6 H -0.25 -5.88 6.82 56.52 0.39 -5.50 15 7 C -0.51 -13.50 8.64 -34.44 -0.30 -13.80 15 8 H 0.08 2.20 7.64 -52.48 -0.40 1.80 15 9 C 0.05 1.02 1.82 -92.92 -0.17 0.85 15 10 H 0.05 1.16 5.03 -51.93 -0.26 0.90 15 11 C 0.07 1.36 6.12 -3.82 -0.02 1.33 15 12 N -0.86 -14.44 9.62 -10.37 -0.10 -14.54 15 13 C -0.02 -0.42 3.82 -104.62 -0.40 -0.82 15 14 C -0.12 -2.05 9.67 -39.59 -0.38 -2.43 15 15 C -0.11 -1.75 9.83 -39.55 -0.39 -2.13 15 16 C -0.06 -0.90 6.32 -39.50 -0.25 -1.15 15 17 Cl -0.10 -1.32 28.96 -51.86 -1.50 -2.82 15 18 C -0.11 -1.81 9.83 -39.55 -0.39 -2.20 15 19 C -0.10 -1.88 8.54 -39.59 -0.34 -2.22 15 20 H 0.27 7.38 8.31 -40.82 -0.34 7.04 15 21 H 0.07 1.45 8.14 -51.93 -0.42 1.03 15 22 H 0.02 0.37 7.21 -51.92 -0.37 0.00 15 23 H 0.33 4.65 9.08 -39.29 -0.36 4.30 15 24 H 0.33 5.27 8.09 -39.29 -0.32 4.95 15 25 H 0.13 2.07 7.94 -52.49 -0.42 1.65 15 26 H 0.12 1.65 8.06 -52.48 -0.42 1.22 15 27 H 0.12 1.72 8.06 -52.49 -0.42 1.29 15 28 H 0.13 2.34 7.46 -52.49 -0.39 1.94 15 LS Contribution 255.64 15.07 3.85 3.85 Total: -1.00 -28.13 255.64 -7.24 -35.37 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: -2.94 Total: 8.02 kcal Atomic # 6 Polarization: -17.83 SS G_CDS: -2.74 Total: -20.56 kcal Atomic # 7 Polarization: -40.70 SS G_CDS: 0.67 Total: -40.02 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -4.59 Total: 16.17 kcal Atomic # 17 Polarization: -1.32 SS G_CDS: -1.50 Total: -2.82 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -28.13 -7.24 -35.37 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000168181610.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.901 kcal (2) G-P(sol) polarization free energy of solvation -28.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.372 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds