Wall clock time and date at job start Mon Mar 30 2020 03:31:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38242 * 119.98878 * 2 1 4 4 C 1.38327 * 119.98076 * 180.02562 * 3 2 1 5 5 Cl 1.73598 * 120.01129 * 179.97438 * 4 3 2 6 6 C 1.38381 * 119.97825 * 359.72566 * 4 3 2 7 7 C 1.38192 * 119.98317 * 0.54640 * 6 4 3 8 8 C 1.50701 * 119.99612 * 179.72702 * 7 6 4 9 9 H 1.08997 * 109.47052 * 199.73060 * 8 7 6 10 10 N 1.46899 * 109.46869 * 319.73096 * 8 7 6 11 11 C 1.50699 * 109.46833 * 79.72796 * 8 7 6 12 12 H 1.08002 * 120.00516 * 359.97438 * 11 8 7 13 13 C 1.37884 * 119.99783 * 180.02562 * 11 8 7 14 14 N 1.31514 * 119.99707 * 0.02562 * 13 11 8 15 15 Si 1.86796 * 119.99956 * 180.27458 * 13 11 8 16 16 H 1.48497 * 109.47172 * 179.72730 * 15 13 11 17 17 H 1.48506 * 109.47132 * 299.72429 * 15 13 11 18 18 H 1.48501 * 109.47173 * 59.72550 * 15 13 11 19 19 C 1.38217 * 119.99441 * 180.02562 * 2 1 3 20 20 H 1.09003 * 109.46916 * 269.97280 * 1 2 3 21 21 H 1.08996 * 109.47628 * 29.97282 * 1 2 3 22 22 H 1.09004 * 109.47276 * 149.97838 * 1 2 3 23 23 H 1.07991 * 120.00982 * 0.02562 * 3 2 1 24 24 H 1.07994 * 120.00945 * 180.27426 * 6 4 3 25 25 H 1.00903 * 111.00162 * 296.04312 * 10 8 7 26 26 H 1.00898 * 111.00359 * 59.99381 * 10 8 7 27 27 H 0.97005 * 119.99656 * 179.97438 * 14 13 11 28 28 H 1.08004 * 119.98370 * 359.95003 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1980 1.1973 0.0000 4 6 3.5813 1.1972 -0.0005 5 17 4.4498 2.7003 -0.0012 6 6 4.2726 -0.0016 0.0047 7 6 3.5807 -1.1978 -0.0010 8 6 4.3332 -2.5035 -0.0016 9 1 3.6779 -3.3004 -0.3530 10 7 5.4967 -2.3976 -0.8922 11 6 4.7983 -2.8157 1.3974 12 1 4.5720 -2.1365 2.2060 13 6 5.5138 -3.9681 1.6450 14 7 5.7906 -4.7945 0.6601 15 14 6.0837 -4.3590 3.3804 16 1 6.8212 -5.6479 3.3807 17 1 6.9785 -3.2766 3.8632 18 1 4.9044 -4.4633 4.2770 19 6 2.1980 -1.1971 -0.0005 20 1 -0.3633 -0.0005 1.0277 21 1 -0.3634 0.8902 -0.5134 22 1 -0.3634 -0.8898 -0.5142 23 1 1.6580 2.1326 0.0004 24 1 5.3525 -0.0023 0.0087 25 1 5.2083 -2.2525 -1.8482 26 1 6.1199 -1.6650 -0.5874 27 1 6.2943 -5.6051 0.8342 28 1 1.6576 -2.1322 -0.0001 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000211714847.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:13 Heat of formation + Delta-G solvation = -11.250273 kcal Electronic energy + Delta-G solvation = -13022.783251 eV Core-core repulsion = 10677.080650 eV Total energy + Delta-G solvation = -2345.702601 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.062 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.51892 -37.53863 -36.53168 -33.94469 -32.80647 -31.11360 -28.01956 -27.74588 -24.62129 -23.00212 -21.10965 -18.48867 -17.69469 -16.77323 -16.60491 -16.10296 -15.74177 -14.89153 -14.68450 -14.30271 -14.07946 -13.64968 -13.32994 -13.16224 -12.92034 -12.74226 -12.34838 -12.25205 -12.18603 -11.93053 -11.59596 -11.22544 -10.56083 -9.57103 -9.51803 -8.92026 -7.99851 -6.21625 0.27975 0.42118 1.15539 1.43586 1.44287 1.51748 2.44699 2.75968 3.24116 3.88585 3.96382 4.19465 4.34186 4.48468 4.49822 4.59623 4.86610 4.87215 5.00093 5.21170 5.26912 5.33988 5.57765 5.73102 5.81240 5.97042 6.14854 6.62351 7.06381 7.23301 7.50854 9.03324 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.027430 B = 0.008212 C = 0.007369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.537828 B = 3408.962508 C = 3798.842733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.072 4.072 3 C -0.132 4.132 4 C -0.033 4.033 5 Cl -0.073 7.073 6 C -0.130 4.130 7 C -0.079 4.079 8 C 0.260 3.740 9 H 0.018 0.982 10 N -0.819 5.819 11 C -0.546 4.546 12 H 0.044 0.956 13 C 0.038 3.962 14 N -0.878 5.878 15 Si 0.946 3.054 16 H -0.283 1.283 17 H -0.275 1.275 18 H -0.272 1.272 19 C -0.132 4.132 20 H 0.081 0.919 21 H 0.086 0.914 22 H 0.074 0.926 23 H 0.153 0.847 24 H 0.118 0.882 25 H 0.312 0.688 26 H 0.322 0.678 27 H 0.256 0.744 28 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.171 11.587 -1.803 14.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.072 4.072 3 C -0.151 4.151 4 C -0.059 4.059 5 Cl -0.044 7.044 6 C -0.149 4.149 7 C -0.082 4.082 8 C 0.150 3.850 9 H 0.036 0.964 10 N -0.346 5.346 11 C -0.584 4.584 12 H 0.062 0.938 13 C -0.166 4.166 14 N -0.513 5.513 15 Si 0.772 3.228 16 H -0.209 1.209 17 H -0.200 1.200 18 H -0.198 1.198 19 C -0.150 4.150 20 H 0.099 0.901 21 H 0.105 0.895 22 H 0.093 0.907 23 H 0.171 0.829 24 H 0.136 0.864 25 H 0.123 0.877 26 H 0.135 0.865 27 H 0.065 0.935 28 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -7.826 10.774 -1.642 13.417 hybrid contribution 0.469 0.541 0.669 0.980 sum -7.357 11.315 -0.973 13.532 Atomic orbital electron populations 1.20833 0.88067 1.04056 1.03429 1.20186 0.97956 0.91484 0.97598 1.21048 0.91258 0.99325 1.03445 1.20961 0.93016 0.86424 1.05499 1.98328 1.77091 1.31966 1.97053 1.20773 1.00113 0.90714 1.03274 1.21422 0.95101 0.97141 0.94492 1.17888 0.87499 0.87185 0.92462 0.96411 1.59016 1.19027 1.53078 1.03496 1.21069 1.37659 1.06753 0.92933 0.93802 1.25643 0.95420 0.95849 0.99690 1.70211 1.37753 1.11140 1.32233 0.85831 0.78486 0.77336 0.81144 1.20889 1.20046 1.19766 1.21223 0.93515 0.98597 1.01698 0.90055 0.89501 0.90730 0.82942 0.86415 0.87704 0.86476 0.93460 0.85917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.15 10.01 71.24 0.71 -1.43 15 2 C -0.07 -2.08 5.88 -19.87 -0.12 -2.20 15 3 C -0.13 -3.75 9.49 22.29 0.21 -3.54 15 4 C -0.03 -1.05 6.32 22.32 0.14 -0.91 15 5 Cl -0.07 -2.06 28.96 -2.72 -0.08 -2.14 15 6 C -0.13 -4.94 9.07 22.29 0.20 -4.73 15 7 C -0.08 -3.27 4.88 -19.87 -0.10 -3.37 15 8 C 0.26 12.88 2.85 43.42 0.12 13.00 15 9 H 0.02 0.99 8.00 -2.39 -0.02 0.97 15 10 N -0.82 -38.68 8.36 -174.96 -1.46 -40.15 15 11 C -0.55 -30.08 8.70 25.60 0.22 -29.86 15 12 H 0.04 2.44 7.74 -2.91 -0.02 2.42 15 13 C 0.04 2.12 5.39 84.66 0.46 2.57 15 14 N -0.88 -51.29 12.77 21.45 0.27 -51.02 15 15 Si 0.95 43.87 29.54 68.60 2.03 45.90 15 16 H -0.28 -12.87 7.11 99.48 0.71 -12.16 15 17 H -0.28 -12.56 7.11 99.48 0.71 -11.85 15 18 H -0.27 -12.29 7.11 99.48 0.71 -11.59 15 19 C -0.13 -4.75 9.32 22.27 0.21 -4.54 15 20 H 0.08 1.48 8.14 -2.39 -0.02 1.46 15 21 H 0.09 1.35 8.08 -2.39 -0.02 1.33 15 22 H 0.07 1.40 8.09 -2.39 -0.02 1.39 15 23 H 0.15 3.36 8.06 -2.92 -0.02 3.34 15 24 H 0.12 4.59 6.67 -2.91 -0.02 4.57 15 25 H 0.31 13.16 9.06 -89.69 -0.81 12.34 15 26 H 0.32 14.60 7.35 -89.70 -0.66 13.94 15 27 H 0.26 14.35 8.31 -92.70 -0.77 13.58 15 28 H 0.12 4.32 8.04 -2.91 -0.02 4.30 15 Total: -1.00 -60.92 260.40 2.54 -58.38 By element: Atomic # 1 Polarization: 24.32 SS G_CDS: -0.29 Total: 24.03 kcal Atomic # 6 Polarization: -37.07 SS G_CDS: 2.06 Total: -35.00 kcal Atomic # 7 Polarization: -89.97 SS G_CDS: -1.19 Total: -91.16 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Atomic # 17 Polarization: -2.06 SS G_CDS: -0.08 Total: -2.14 kcal Total: -60.92 2.54 -58.38 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000211714847.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.131 kcal (2) G-P(sol) polarization free energy of solvation -60.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds