Wall clock time and date at job start Mon Mar 30 2020 02:50:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00042 * 2 1 4 4 H 1.48493 * 109.47326 * 90.00391 * 3 2 1 5 5 H 1.48506 * 109.46545 * 210.00141 * 3 2 1 6 6 H 1.48498 * 109.47210 * 329.99852 * 3 2 1 7 7 C 1.37879 * 119.99350 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00409 * 359.97438 * 7 2 1 9 9 C 1.50706 * 119.99398 * 180.02562 * 7 2 1 10 10 H 1.08993 * 109.47221 * 59.99458 * 9 7 2 11 11 N 1.46906 * 109.46675 * 299.99446 * 9 7 2 12 12 C 1.50699 * 109.46824 * 180.02562 * 9 7 2 13 13 C 1.38112 * 119.99270 * 99.99605 * 12 9 7 14 14 C 1.38897 * 119.97482 * 179.97438 * 13 12 9 15 15 S 1.76196 * 120.02341 * 180.02562 * 14 13 12 16 16 C 1.38942 * 119.95368 * 0.02562 * 14 13 12 17 17 C 1.38070 * 119.97509 * 359.97438 * 16 14 13 18 18 C 1.38700 * 119.98396 * 279.72092 * 12 9 7 19 19 O 1.36005 * 119.97478 * 359.97438 * 18 12 9 20 20 H 0.97005 * 119.99661 * 359.97438 * 1 2 3 21 21 H 1.00899 * 110.99290 * 176.04796 * 11 9 7 22 22 H 1.00897 * 111.00195 * 299.99919 * 11 9 7 23 23 H 1.07992 * 120.00981 * 0.02562 * 13 12 9 24 24 H 1.34494 * 103.00448 * 89.99697 * 15 14 13 25 25 H 1.08001 * 120.01399 * 179.97438 * 16 14 13 26 26 H 1.07998 * 119.99021 * 179.97438 * 17 16 14 27 27 H 0.96700 * 113.99690 * 89.99585 * 19 18 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 1.4000 5 1 3.5467 1.4400 -0.7001 6 1 1.4466 2.6526 -0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1942 0.0000 10 1 3.8745 -0.6809 0.8904 11 7 4.0015 -0.5009 -1.1989 12 6 4.0137 -2.6150 -0.0013 13 6 4.4400 -3.1954 -1.1798 14 6 4.9034 -4.5048 -1.1806 15 16 5.4482 -5.2463 -2.6832 16 6 4.9369 -5.2295 0.0044 17 6 4.5103 -4.6473 1.1814 18 6 4.0530 -3.3375 1.1820 19 8 3.6387 -2.7629 2.3430 20 1 -0.4850 0.8401 0.0004 21 1 5.0080 -0.4309 -1.1899 22 1 3.6783 -0.9580 -2.0383 23 1 4.4139 -2.6311 -2.1002 24 1 6.7582 -4.9433 -2.7126 25 1 5.2966 -6.2479 0.0048 26 1 4.5359 -5.2105 2.1025 27 1 2.6979 -2.8864 2.5291 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000211721476.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:51 Heat of formation + Delta-G solvation = -5.381999 kcal Electronic energy + Delta-G solvation = -13324.334062 eV Core-core repulsion = 10980.929635 eV Total energy + Delta-G solvation = -2343.404427 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.056 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.54759 -36.21599 -34.96657 -31.96359 -29.89382 -29.33702 -26.44571 -23.14660 -22.29298 -20.20743 -17.91170 -17.66886 -16.96003 -15.66335 -15.61028 -14.90501 -14.50452 -14.00143 -13.65888 -13.45080 -12.95893 -12.36985 -12.03481 -11.75500 -11.40917 -10.78662 -10.67918 -10.52847 -10.14302 -9.83442 -9.39152 -8.60850 -8.52489 -8.10129 -8.06975 -7.29720 -6.06149 -4.17618 1.12011 1.65469 1.85297 2.88178 3.49824 3.59994 3.87909 3.91009 4.67440 4.70939 5.10080 5.20884 5.24260 5.59503 5.71777 5.86071 5.99127 6.25707 6.37233 6.51468 6.71893 6.97426 7.03571 7.54860 8.08885 8.12655 8.26279 8.60947 8.90594 9.58046 11.03004 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.033561 B = 0.009026 C = 0.007960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.093102 B = 3101.251521 C = 3516.565700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.088 3.912 3 Si 0.867 3.133 4 H -0.296 1.296 5 H -0.193 1.193 6 H -0.304 1.304 7 C -0.522 4.522 8 H 0.067 0.933 9 C 0.223 3.777 10 H 0.057 0.943 11 N -0.836 5.836 12 C -0.099 4.099 13 C -0.068 4.068 14 C -0.119 4.119 15 S -0.137 6.137 16 C -0.079 4.079 17 C -0.158 4.158 18 C 0.142 3.858 19 O -0.495 6.495 20 H 0.264 0.736 21 H 0.308 0.692 22 H 0.331 0.669 23 H 0.132 0.868 24 H 0.067 0.933 25 H 0.128 0.872 26 H 0.128 0.872 27 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.202 -8.142 -0.584 13.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.116 4.116 3 Si 0.694 3.306 4 H -0.224 1.224 5 H -0.115 1.115 6 H -0.231 1.231 7 C -0.560 4.560 8 H 0.085 0.915 9 C 0.113 3.887 10 H 0.074 0.926 11 N -0.365 5.365 12 C -0.103 4.103 13 C -0.089 4.089 14 C -0.231 4.231 15 S 0.020 5.980 16 C -0.100 4.100 17 C -0.178 4.178 18 C 0.096 3.904 19 O -0.306 6.306 20 H 0.073 0.927 21 H 0.119 0.881 22 H 0.146 0.854 23 H 0.149 0.851 24 H 0.031 0.969 25 H 0.146 0.854 26 H 0.146 0.854 27 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges 10.289 -7.698 -1.127 12.900 hybrid contribution 0.765 0.410 0.766 1.157 sum 11.054 -7.288 -0.362 13.246 Atomic orbital electron populations 1.69949 1.06956 1.27498 1.49002 1.24958 0.94483 1.00098 0.92109 0.87185 0.84569 0.80952 0.77891 1.22367 1.11457 1.23149 1.20604 0.86889 0.94418 1.54041 0.91453 1.18534 0.96446 0.83102 0.90619 0.92556 1.60040 1.12721 1.57874 1.05899 1.21720 0.95986 1.01195 0.91417 1.21310 0.96210 0.93154 0.98220 1.21010 1.09592 0.97407 0.95119 1.85876 1.10962 1.73322 1.27816 1.21208 0.98589 0.99188 0.90985 1.21394 1.03389 0.94660 0.98358 1.18479 0.96139 0.90049 0.85682 1.84653 1.31196 1.77715 1.37076 0.92682 0.88051 0.85447 0.85053 0.96888 0.85361 0.85409 0.74214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.95 13.96 55.43 0.77 -26.18 15 2 C 0.09 2.47 5.47 -17.82 -0.10 2.37 15 3 Si 0.87 21.27 26.94 -169.99 -4.58 16.69 15 4 H -0.30 -7.42 7.11 56.52 0.40 -7.02 15 5 H -0.19 -4.39 5.17 56.52 0.29 -4.09 15 6 H -0.30 -7.71 7.11 56.52 0.40 -7.31 15 7 C -0.52 -13.83 9.29 -34.44 -0.32 -14.15 15 8 H 0.07 1.96 7.98 -52.49 -0.42 1.54 15 9 C 0.22 4.91 2.01 -70.01 -0.14 4.77 15 10 H 0.06 1.32 7.27 -51.93 -0.38 0.95 15 11 N -0.84 -16.69 5.31 -6.65 -0.04 -16.72 15 12 C -0.10 -1.91 5.02 -104.50 -0.52 -2.44 15 13 C -0.07 -1.19 8.99 -39.38 -0.35 -1.54 15 14 C -0.12 -1.89 6.11 -39.08 -0.24 -2.13 15 15 S -0.14 -1.88 25.77 -107.50 -2.77 -4.65 15 16 C -0.08 -1.15 9.79 -39.38 -0.39 -1.54 15 17 C -0.16 -2.41 9.98 -39.46 -0.39 -2.80 15 18 C 0.14 2.57 6.67 -39.23 -0.26 2.31 15 19 O -0.49 -8.83 12.72 -19.76 -0.25 -9.08 15 20 H 0.26 7.54 8.31 -40.82 -0.34 7.20 15 21 H 0.31 5.35 9.06 -39.29 -0.36 4.99 15 22 H 0.33 6.38 7.28 -39.29 -0.29 6.09 15 23 H 0.13 2.18 6.24 -52.49 -0.33 1.86 15 24 H 0.07 0.83 9.07 97.61 0.89 1.72 15 25 H 0.13 1.54 8.06 -52.49 -0.42 1.11 15 26 H 0.13 1.63 8.06 -52.49 -0.42 1.21 15 27 H 0.40 6.12 9.06 45.56 0.41 6.53 15 LS Contribution 247.78 15.07 3.73 3.73 Total: -1.00 -30.18 247.78 -6.40 -36.58 By element: Atomic # 1 Polarization: 15.33 SS G_CDS: -0.56 Total: 14.77 kcal Atomic # 6 Polarization: -12.43 SS G_CDS: -2.72 Total: -15.15 kcal Atomic # 7 Polarization: -43.64 SS G_CDS: 0.74 Total: -42.90 kcal Atomic # 8 Polarization: -8.83 SS G_CDS: -0.25 Total: -9.08 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -4.58 Total: 16.69 kcal Atomic # 16 Polarization: -1.88 SS G_CDS: -2.77 Total: -4.65 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -30.18 -6.40 -36.58 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000211721476.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.203 kcal (2) G-P(sol) polarization free energy of solvation -30.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds