Wall clock time and date at job start Mon Mar 30 2020 02:50:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00042 * 2 1 4 4 H 1.48493 * 109.47326 * 90.00391 * 3 2 1 5 5 H 1.48506 * 109.46545 * 210.00141 * 3 2 1 6 6 H 1.48498 * 109.47210 * 329.99852 * 3 2 1 7 7 C 1.37879 * 119.99350 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00409 * 359.97438 * 7 2 1 9 9 C 1.50706 * 119.99398 * 180.02562 * 7 2 1 10 10 H 1.08993 * 109.47221 * 59.99458 * 9 7 2 11 11 N 1.46906 * 109.46675 * 299.99446 * 9 7 2 12 12 C 1.50699 * 109.46824 * 180.02562 * 9 7 2 13 13 C 1.38112 * 119.99270 * 99.99605 * 12 9 7 14 14 C 1.38897 * 119.97482 * 179.97438 * 13 12 9 15 15 S 1.76196 * 120.02341 * 180.02562 * 14 13 12 16 16 C 1.38942 * 119.95368 * 0.02562 * 14 13 12 17 17 C 1.38070 * 119.97509 * 359.97438 * 16 14 13 18 18 C 1.38700 * 119.98396 * 279.72092 * 12 9 7 19 19 O 1.36005 * 119.97478 * 359.97438 * 18 12 9 20 20 H 0.97005 * 119.99661 * 359.97438 * 1 2 3 21 21 H 1.00899 * 110.99290 * 176.04796 * 11 9 7 22 22 H 1.00897 * 111.00195 * 299.99919 * 11 9 7 23 23 H 1.07992 * 120.00981 * 0.02562 * 13 12 9 24 24 H 1.34494 * 103.00448 * 89.99697 * 15 14 13 25 25 H 1.08001 * 120.01399 * 179.97438 * 16 14 13 26 26 H 1.07998 * 119.99021 * 179.97438 * 17 16 14 27 27 H 0.96700 * 113.99690 * 89.99585 * 19 18 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 1.4000 5 1 3.5467 1.4400 -0.7001 6 1 1.4466 2.6526 -0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1942 0.0000 10 1 3.8745 -0.6809 0.8904 11 7 4.0015 -0.5009 -1.1989 12 6 4.0137 -2.6150 -0.0013 13 6 4.4400 -3.1954 -1.1798 14 6 4.9034 -4.5048 -1.1806 15 16 5.4482 -5.2463 -2.6832 16 6 4.9369 -5.2295 0.0044 17 6 4.5103 -4.6473 1.1814 18 6 4.0530 -3.3375 1.1820 19 8 3.6387 -2.7629 2.3430 20 1 -0.4850 0.8401 0.0004 21 1 5.0080 -0.4309 -1.1899 22 1 3.6783 -0.9580 -2.0383 23 1 4.4139 -2.6311 -2.1002 24 1 6.7582 -4.9433 -2.7126 25 1 5.2966 -6.2479 0.0048 26 1 4.5359 -5.2105 2.1025 27 1 2.6979 -2.8864 2.5291 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000211721476.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:50 Heat of formation + Delta-G solvation = -28.532742 kcal Electronic energy + Delta-G solvation = -13325.337954 eV Core-core repulsion = 10980.929635 eV Total energy + Delta-G solvation = -2344.408319 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.056 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.89235 -37.57392 -36.60943 -34.01092 -31.21995 -30.71786 -28.34234 -24.75650 -23.59288 -21.77158 -19.25209 -18.99901 -18.82115 -17.02104 -16.95136 -16.65010 -15.93610 -15.76011 -15.09014 -14.88073 -14.35344 -14.10538 -13.55964 -13.27838 -12.89100 -12.67443 -12.28398 -12.14631 -11.65158 -11.40636 -11.31742 -10.72420 -9.83470 -9.45171 -9.17474 -8.96001 -8.23043 -6.35757 -0.11375 0.37064 0.69022 1.52187 1.59363 1.80216 1.94846 2.60503 2.62231 3.15806 3.42227 3.87964 3.94679 4.14350 4.37831 4.46099 4.67304 4.93413 5.01586 5.18334 5.27786 5.42374 5.66434 5.74538 6.13074 6.47358 6.76929 6.82035 6.98614 7.42801 8.89465 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.033561 B = 0.009026 C = 0.007960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.093102 B = 3101.251521 C = 3516.565700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.032 3.968 3 Si 0.924 3.076 4 H -0.303 1.303 5 H -0.160 1.160 6 H -0.316 1.316 7 C -0.509 4.509 8 H 0.029 0.971 9 C 0.234 3.766 10 H 0.043 0.957 11 N -0.838 5.838 12 C -0.129 4.129 13 C -0.073 4.073 14 C -0.128 4.128 15 S -0.126 6.126 16 C -0.068 4.068 17 C -0.151 4.151 18 C 0.123 3.877 19 O -0.506 6.506 20 H 0.262 0.738 21 H 0.329 0.671 22 H 0.337 0.663 23 H 0.135 0.865 24 H 0.083 0.917 25 H 0.162 0.838 26 H 0.156 0.844 27 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.569 -9.274 -1.082 15.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.167 4.167 3 Si 0.750 3.250 4 H -0.232 1.232 5 H -0.080 1.080 6 H -0.245 1.245 7 C -0.547 4.547 8 H 0.047 0.953 9 C 0.124 3.876 10 H 0.060 0.940 11 N -0.370 5.370 12 C -0.134 4.134 13 C -0.094 4.094 14 C -0.240 4.240 15 S 0.031 5.969 16 C -0.088 4.088 17 C -0.171 4.171 18 C 0.077 3.923 19 O -0.318 6.318 20 H 0.070 0.930 21 H 0.143 0.857 22 H 0.152 0.848 23 H 0.153 0.847 24 H 0.047 0.953 25 H 0.180 0.820 26 H 0.174 0.826 27 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges 12.686 -8.848 -1.631 15.552 hybrid contribution 0.074 0.590 0.898 1.077 sum 12.759 -8.258 -0.733 15.216 Atomic orbital electron populations 1.70086 1.08707 1.28021 1.51910 1.25786 0.95003 1.03563 0.92342 0.86378 0.84544 0.76609 0.77455 1.23152 1.08034 1.24468 1.20808 0.89554 0.92471 1.51837 0.95270 1.18092 0.93365 0.85380 0.90792 0.93950 1.59705 1.14364 1.57592 1.05290 1.21500 0.98622 1.00197 0.93061 1.21374 0.96356 0.94131 0.97567 1.21233 1.09128 0.96889 0.96732 1.85866 1.12013 1.72528 1.26477 1.21640 0.96727 1.00357 0.90079 1.21658 1.02050 0.93495 0.99942 1.18759 0.96950 0.91289 0.85265 1.84624 1.31815 1.78172 1.37218 0.92959 0.85748 0.84812 0.84686 0.95304 0.82046 0.82633 0.73570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.81 13.96 21.45 0.30 -58.51 15 2 C 0.03 1.83 5.47 84.66 0.46 2.30 15 3 Si 0.92 44.29 26.94 68.60 1.85 46.14 15 4 H -0.30 -14.81 7.11 99.48 0.71 -14.10 15 5 H -0.16 -6.78 5.17 99.48 0.51 -6.26 15 6 H -0.32 -15.71 7.11 99.48 0.71 -15.00 15 7 C -0.51 -27.52 9.29 25.60 0.24 -27.28 15 8 H 0.03 1.76 7.98 -2.91 -0.02 1.74 15 9 C 0.23 10.22 2.01 43.42 0.09 10.31 15 10 H 0.04 1.97 7.27 -2.39 -0.02 1.96 15 11 N -0.84 -32.00 5.31 -174.94 -0.93 -32.93 15 12 C -0.13 -4.92 5.02 -19.78 -0.10 -5.02 15 13 C -0.07 -2.45 8.99 22.40 0.20 -2.24 15 14 C -0.13 -3.69 6.11 22.60 0.14 -3.55 15 15 S -0.13 -3.05 25.77 -56.49 -1.46 -4.51 15 16 C -0.07 -1.73 9.79 22.40 0.22 -1.52 15 17 C -0.15 -4.21 9.98 22.35 0.22 -3.99 15 18 C 0.12 4.31 6.67 22.50 0.15 4.46 15 19 O -0.51 -17.93 12.72 -93.61 -1.19 -19.12 15 20 H 0.26 15.51 8.31 -92.70 -0.77 14.74 15 21 H 0.33 10.58 9.06 -89.69 -0.81 9.76 15 22 H 0.34 12.45 7.28 -89.70 -0.65 11.80 15 23 H 0.14 4.26 6.24 -2.91 -0.02 4.24 15 24 H 0.08 1.75 9.07 73.35 0.67 2.42 15 25 H 0.16 3.07 8.06 -2.91 -0.02 3.05 15 26 H 0.16 3.41 8.06 -2.91 -0.02 3.39 15 27 H 0.41 12.70 9.06 -74.06 -0.67 12.03 15 Total: -1.00 -65.50 247.78 -0.23 -65.73 By element: Atomic # 1 Polarization: 30.17 SS G_CDS: -0.42 Total: 29.75 kcal Atomic # 6 Polarization: -28.16 SS G_CDS: 1.62 Total: -26.54 kcal Atomic # 7 Polarization: -90.81 SS G_CDS: -0.63 Total: -91.44 kcal Atomic # 8 Polarization: -17.93 SS G_CDS: -1.19 Total: -19.12 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 1.85 Total: 46.14 kcal Atomic # 16 Polarization: -3.05 SS G_CDS: -1.46 Total: -4.51 kcal Total: -65.50 -0.23 -65.73 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000211721476.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.196 kcal (2) G-P(sol) polarization free energy of solvation -65.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds