Wall clock time and date at job start Mon Mar 30 2020 02:39:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30929 * 1 3 3 Si 1.86800 * 119.99887 * 2 1 4 4 H 1.48501 * 109.47341 * 89.99639 * 3 2 1 5 5 H 1.48507 * 109.47176 * 209.99423 * 3 2 1 6 6 H 1.48496 * 109.47298 * 329.99804 * 3 2 1 7 7 C 1.39850 * 120.00134 * 180.26830 * 2 1 3 8 8 H 1.07997 * 120.00373 * 160.06978 * 7 2 1 9 9 C 1.41207 * 119.99932 * 340.07032 * 7 2 1 10 10 C 1.41329 * 120.12929 * 323.24325 * 9 7 2 11 11 F 1.35099 * 119.76050 * 359.97438 * 10 9 7 12 12 C 1.36344 * 120.47529 * 179.79006 * 10 9 7 13 13 C 1.39421 * 120.46659 * 0.45435 * 12 10 9 14 14 O 1.34813 * 133.02349 * 179.80144 * 13 12 10 15 15 N 1.41309 * 109.40813 * 179.97438 * 14 13 12 16 16 C 1.29747 * 109.81443 * 359.97438 * 15 14 13 17 17 C 1.40789 * 119.98765 * 359.80163 * 13 12 10 18 18 C 1.39440 * 120.04931 * 359.96607 * 17 13 12 19 19 F 1.35091 * 120.36176 * 179.97438 * 18 17 13 20 20 H 0.97002 * 119.99928 * 359.72966 * 1 2 3 21 21 H 1.07996 * 119.76807 * 180.25629 * 12 10 9 22 22 H 1.08003 * 126.30758 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3093 0.0000 0.0000 3 14 2.2433 1.6178 0.0000 4 1 2.4907 2.0465 1.4001 5 1 3.5409 1.4402 -0.6999 6 1 1.4408 2.6527 -0.7001 7 6 2.0086 -1.2111 -0.0057 8 1 3.0400 -1.2377 -0.3246 9 6 1.3660 -2.3993 0.4056 10 6 0.4363 -2.3713 1.4698 11 9 0.1650 -1.2035 2.0926 12 6 -0.1914 -3.5136 1.8698 13 6 0.0818 -4.7277 1.2411 14 8 -0.3756 -5.9824 1.4256 15 7 0.2438 -6.8491 0.4972 16 6 1.0637 -6.1781 -0.2517 17 6 1.0084 -4.7790 0.1825 18 6 1.6529 -3.6163 -0.2384 19 9 2.5435 -3.6585 -1.2533 20 1 -0.4850 0.8401 0.0040 21 1 -0.9028 -3.4783 2.6816 22 1 1.6755 -6.5770 -1.0474 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214758617.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:09 Heat of formation + Delta-G solvation = -32.707965 kcal Electronic energy + Delta-G solvation = -14960.305923 eV Core-core repulsion = 11926.043071 eV Total energy + Delta-G solvation = -3034.262851 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 225.034 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -47.65225 -47.59575 -40.67124 -36.30790 -33.65363 -32.89523 -29.84288 -28.77766 -25.47289 -22.26869 -21.71549 -21.10937 -18.10233 -17.46701 -16.36939 -15.78382 -15.32938 -14.94426 -14.55706 -14.46910 -14.23359 -13.98083 -13.26143 -13.14548 -12.23696 -11.75702 -11.70954 -11.51960 -11.29421 -10.83047 -10.59374 -10.56442 -10.23025 -10.12410 -9.30531 -7.74294 -7.61928 -7.07043 -4.68562 1.39803 2.19034 2.78356 2.96469 3.00618 3.02705 3.26342 3.79095 4.14287 4.75855 4.87437 5.07483 5.33362 5.51983 5.72862 6.11227 6.20953 6.59557 6.80392 6.91294 7.04392 7.23998 7.38671 7.88562 8.05076 8.31051 8.47898 9.92439 Molecular weight = 225.03amu Principal moments of inertia in cm(-1) A = 0.044420 B = 0.010142 C = 0.008576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.199181 B = 2760.161353 C = 3263.988410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.776 5.776 2 C 0.077 3.923 3 Si 0.919 3.081 4 H -0.264 1.264 5 H -0.260 1.260 6 H -0.275 1.275 7 C -0.456 4.456 8 H 0.093 0.907 9 C 0.040 3.960 10 C 0.139 3.861 11 F -0.120 7.120 12 C -0.157 4.157 13 C 0.025 3.975 14 O -0.101 6.101 15 N -0.315 5.315 16 C 0.106 3.894 17 C -0.202 4.202 18 C 0.052 3.948 19 F -0.141 7.141 20 H 0.289 0.711 21 H 0.128 0.872 22 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.764 -1.410 0.378 2.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.399 5.399 2 C -0.144 4.144 3 Si 0.742 3.258 4 H -0.189 1.189 5 H -0.183 1.183 6 H -0.200 1.200 7 C -0.484 4.484 8 H 0.111 0.889 9 C 0.036 3.964 10 C 0.116 3.884 11 F -0.098 7.098 12 C -0.178 4.178 13 C -0.028 4.028 14 O -0.115 6.115 15 N -0.057 5.057 16 C -0.094 4.094 17 C -0.207 4.207 18 C 0.030 3.970 19 F -0.120 7.120 20 H 0.100 0.900 21 H 0.146 0.854 22 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 0.979 -2.381 0.695 2.667 hybrid contribution 0.684 1.649 -0.372 1.823 sum 1.662 -0.732 0.322 1.845 Atomic orbital electron populations 1.69770 1.07836 1.30677 1.31594 1.25855 0.94773 1.01668 0.92154 0.86112 0.80380 0.79673 0.79619 1.18900 1.18345 1.20046 1.19272 0.99397 0.90396 1.39293 0.88887 1.17361 0.94149 0.92590 0.92313 1.16874 0.98918 0.80089 0.92473 1.91426 1.92143 1.46006 1.80197 1.19031 1.05779 0.88350 1.04637 1.19001 0.98596 0.86624 0.98626 1.88925 1.58262 1.14373 1.49910 1.79549 1.10967 1.12410 1.02781 1.25747 0.95143 0.91296 0.97186 1.20425 1.05339 0.92738 1.02193 1.16739 0.97213 0.92254 0.90827 1.91322 1.66058 1.97069 1.57570 0.89971 0.85448 0.78460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.21 11.12 55.54 0.62 -18.59 14 2 C 0.08 1.84 4.49 -17.33 -0.08 1.76 14 3 Si 0.92 17.96 29.60 -169.99 -5.03 12.93 14 4 H -0.26 -5.13 7.11 56.52 0.40 -4.73 14 5 H -0.26 -4.99 7.11 56.52 0.40 -4.59 14 6 H -0.28 -5.24 7.11 56.52 0.40 -4.84 14 7 C -0.46 -11.43 8.56 -37.85 -0.32 -11.75 14 8 H 0.09 2.26 7.92 -52.49 -0.42 1.85 14 9 C 0.04 1.00 5.40 -106.69 -0.58 0.43 14 10 C 0.14 3.33 6.62 -39.09 -0.26 3.07 14 11 F -0.12 -2.91 14.21 2.25 0.03 -2.87 14 12 C -0.16 -3.44 9.95 -39.82 -0.40 -3.83 14 13 C 0.03 0.56 7.49 -38.18 -0.29 0.27 14 14 O -0.10 -2.19 12.06 7.73 0.09 -2.10 14 15 N -0.31 -6.25 12.81 31.95 0.41 -5.84 14 16 C 0.11 1.94 12.32 -15.07 -0.19 1.75 14 17 C -0.20 -4.41 6.32 -105.12 -0.66 -5.08 14 18 C 0.05 1.23 7.36 -38.22 -0.28 0.95 14 19 F -0.14 -3.20 16.84 2.25 0.04 -3.17 14 20 H 0.29 6.52 8.30 -40.82 -0.34 6.18 14 21 H 0.13 2.45 8.06 -52.49 -0.42 2.02 14 22 H 0.20 2.70 8.06 -52.48 -0.42 2.28 14 LS Contribution 218.80 15.07 3.30 3.30 Total: -1.00 -26.62 218.80 -3.99 -30.61 By element: Atomic # 1 Polarization: -1.43 SS G_CDS: -0.40 Total: -1.83 kcal Atomic # 6 Polarization: -9.38 SS G_CDS: -3.05 Total: -12.43 kcal Atomic # 7 Polarization: -25.46 SS G_CDS: 1.03 Total: -24.43 kcal Atomic # 8 Polarization: -2.19 SS G_CDS: 0.09 Total: -2.10 kcal Atomic # 9 Polarization: -6.11 SS G_CDS: 0.07 Total: -6.04 kcal Atomic # 14 Polarization: 17.96 SS G_CDS: -5.03 Total: 12.93 kcal Total LS contribution 3.30 Total: 3.30 kcal Total: -26.62 -3.99 -30.61 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214758617.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.102 kcal (2) G-P(sol) polarization free energy of solvation -26.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds