Wall clock time and date at job start Mon Mar 30 2020 03:17:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30898 * 1 3 3 Si 1.86797 * 119.99994 * 2 1 4 4 H 1.48493 * 109.47145 * 274.98166 * 3 2 1 5 5 H 1.48507 * 109.46834 * 34.97748 * 3 2 1 6 6 H 1.48500 * 109.47086 * 154.97858 * 3 2 1 7 7 C 1.39813 * 120.00002 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99863 * 186.03307 * 7 2 1 9 9 C 1.41268 * 120.00139 * 5.75741 * 7 2 1 10 10 N 1.35166 * 125.59550 * 354.57724 * 9 7 2 11 11 C 1.30409 * 109.02999 * 179.97438 * 10 9 7 12 12 N 1.35204 * 109.19074 * 0.39084 * 11 10 9 13 13 N 1.33134 * 125.60040 * 174.27369 * 9 7 2 14 14 C 1.47362 * 126.57133 * 179.02044 * 12 11 10 15 15 C 1.53938 * 107.55135 * 289.74833 * 14 12 11 16 16 C 1.49753 * 111.45110 * 84.19515 * 15 14 12 17 17 C 1.51429 * 118.51019 * 284.01272 * 16 15 14 18 18 S 1.78105 * 127.40765 * 180.52977 * 11 10 9 19 19 H 0.96999 * 120.00055 * 0.02562 * 1 2 3 20 20 H 1.09006 * 109.84197 * 170.23885 * 14 12 11 21 21 H 1.09003 * 109.84104 * 49.26017 * 14 12 11 22 22 H 1.09002 * 109.08409 * 323.69123 * 15 14 12 23 23 H 1.08993 * 109.03507 * 204.66800 * 15 14 12 24 24 H 1.08996 * 107.63241 * 161.71953 * 16 15 14 25 25 H 1.08994 * 107.63281 * 46.30350 * 16 15 14 26 26 H 1.09002 * 109.46446 * 316.44615 * 17 16 15 27 27 H 1.09005 * 109.46454 * 196.47424 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2430 1.6177 0.0000 4 1 2.3852 2.1072 -1.3947 5 1 1.4969 2.6200 0.8027 6 1 3.5892 1.4120 0.5922 7 6 2.0080 -1.2108 0.0005 8 1 3.0835 -1.2133 0.0988 9 6 1.3071 -2.4312 -0.1216 10 7 -0.0375 -2.5676 -0.1415 11 6 -0.3349 -3.8312 -0.2664 12 7 0.8069 -4.5531 -0.3227 13 7 1.8624 -3.6352 -0.2419 14 6 0.9145 -6.0179 -0.4421 15 6 0.4507 -6.6278 0.8930 16 6 -1.0391 -6.7721 0.9410 17 6 -1.8782 -5.5334 1.1743 18 16 -1.9590 -4.5565 -0.3583 19 1 -0.4850 0.8400 -0.0004 20 1 1.9498 -6.2981 -0.6370 21 1 0.2760 -6.3711 -1.2518 22 1 0.7727 -5.9826 1.7105 23 1 0.9079 -7.6099 1.0131 24 1 -1.2765 -7.4851 1.7305 25 1 -1.3585 -7.2141 -0.0027 26 1 -1.4273 -4.9328 1.9644 27 1 -2.8849 -5.8272 1.4714 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214772220.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:29 Heat of formation + Delta-G solvation = 80.505337 kcal Electronic energy + Delta-G solvation = -13414.971061 eV Core-core repulsion = 11107.583739 eV Total energy + Delta-G solvation = -2307.387322 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.063 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.98466 -36.16181 -33.41784 -31.67266 -29.53911 -28.68559 -26.12394 -23.89231 -21.47883 -20.37937 -19.85657 -17.10759 -16.30892 -15.60235 -15.09733 -14.58357 -14.23434 -13.80222 -13.46353 -12.95824 -12.46184 -12.07551 -11.68528 -11.27948 -11.14814 -10.99387 -10.75854 -10.55708 -10.29458 -10.12780 -9.81271 -9.25505 -8.30462 -8.16805 -7.97152 -7.32048 -6.41190 -4.42446 1.94437 2.40583 3.03822 3.20104 3.24871 3.29281 3.82234 4.12340 4.43963 4.68362 4.94001 5.00943 5.34906 5.55906 5.60499 5.63383 5.84689 5.89044 5.96283 6.04338 6.32815 6.61325 7.05508 7.39669 7.97826 8.17539 8.40460 8.87993 9.01494 9.98894 10.53152 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.049091 B = 0.008441 C = 0.007585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 570.231204 B = 3316.193561 C = 3690.575507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.756 5.756 2 C 0.080 3.920 3 Si 0.916 3.084 4 H -0.271 1.271 5 H -0.278 1.278 6 H -0.263 1.263 7 C -0.440 4.440 8 H 0.087 0.913 9 C 0.347 3.653 10 N -0.451 5.451 11 C 0.218 3.782 12 N -0.404 5.404 13 N -0.427 5.427 14 C 0.140 3.860 15 C -0.137 4.137 16 C -0.119 4.119 17 C -0.105 4.105 18 S -0.061 6.061 19 H 0.273 0.727 20 H 0.090 0.910 21 H 0.081 0.919 22 H 0.070 0.930 23 H 0.080 0.920 24 H 0.065 0.935 25 H 0.070 0.930 26 H 0.088 0.912 27 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.666 -10.319 1.649 11.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.382 5.382 2 C -0.143 4.143 3 Si 0.740 3.260 4 H -0.197 1.197 5 H -0.203 1.203 6 H -0.187 1.187 7 C -0.482 4.482 8 H 0.105 0.895 9 C 0.087 3.913 10 N -0.180 5.180 11 C -0.169 4.169 12 N -0.202 5.202 13 N -0.263 5.263 14 C 0.016 3.984 15 C -0.176 4.176 16 C -0.158 4.158 17 C -0.255 4.255 18 S 0.165 5.835 19 H 0.084 0.916 20 H 0.108 0.892 21 H 0.099 0.901 22 H 0.088 0.912 23 H 0.099 0.901 24 H 0.084 0.916 25 H 0.089 0.911 26 H 0.107 0.893 27 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -4.243 -10.036 0.847 10.929 hybrid contribution 1.154 0.475 0.861 1.516 sum -3.089 -9.561 1.707 10.192 Atomic orbital electron populations 1.70070 1.06893 1.27907 1.33370 1.25843 0.94860 1.00745 0.92860 0.86199 0.80259 0.80717 0.78820 1.19665 1.20322 1.18678 1.18285 0.94248 0.86724 1.48948 0.89510 1.21179 0.86145 0.92066 0.91936 1.71719 1.15232 1.10960 1.20119 1.25774 0.91786 0.92190 1.07107 1.50652 1.03971 1.05877 1.59664 1.78728 1.07154 0.98610 1.41767 1.21810 1.02756 0.76932 0.96943 1.21588 0.95601 1.01706 0.98713 1.20852 0.95059 0.96886 1.03016 1.23389 1.03960 0.99045 0.99107 1.85795 1.12611 1.54832 1.30300 0.91641 0.89153 0.90106 0.91173 0.90117 0.91633 0.91126 0.89283 0.87312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -21.56 11.91 55.54 0.66 -20.90 15 2 C 0.08 2.19 5.49 -17.36 -0.10 2.09 15 3 Si 0.92 19.98 29.56 -169.99 -5.03 14.96 15 4 H -0.27 -5.83 7.11 56.52 0.40 -5.43 15 5 H -0.28 -5.88 7.11 56.52 0.40 -5.47 15 6 H -0.26 -5.62 7.11 56.52 0.40 -5.22 15 7 C -0.44 -12.90 9.48 -37.84 -0.36 -13.26 15 8 H 0.09 2.45 7.85 -52.49 -0.41 2.03 15 9 C 0.35 10.44 7.60 -157.18 -1.19 9.24 15 10 N -0.45 -13.21 9.42 -12.36 -0.12 -13.32 15 11 C 0.22 5.38 7.53 -90.30 -0.68 4.70 15 12 N -0.40 -9.50 3.62 -59.96 -0.22 -9.71 15 13 N -0.43 -11.95 12.82 30.96 0.40 -11.55 15 14 C 0.14 2.36 6.68 -3.08 -0.02 2.34 15 15 C -0.14 -1.89 5.69 -27.85 -0.16 -2.04 15 16 C -0.12 -1.43 4.91 -29.13 -0.14 -1.58 15 17 C -0.11 -1.51 6.11 36.36 0.22 -1.29 15 18 S -0.06 -1.15 22.14 -107.50 -2.38 -3.53 15 19 H 0.27 7.05 8.30 -40.82 -0.34 6.71 15 20 H 0.09 1.44 8.14 -51.93 -0.42 1.02 15 21 H 0.08 1.21 7.76 -51.93 -0.40 0.81 15 22 H 0.07 1.16 8.05 -51.93 -0.42 0.74 15 23 H 0.08 0.85 8.14 -51.93 -0.42 0.43 15 24 H 0.07 0.63 8.13 -51.93 -0.42 0.21 15 25 H 0.07 0.79 7.63 -51.93 -0.40 0.39 15 26 H 0.09 1.45 8.07 -51.93 -0.42 1.03 15 27 H 0.11 1.22 8.14 -51.93 -0.42 0.79 15 LS Contribution 244.50 15.07 3.68 3.68 Total: -1.00 -33.83 244.50 -8.30 -42.12 By element: Atomic # 1 Polarization: 0.92 SS G_CDS: -2.87 Total: -1.96 kcal Atomic # 6 Polarization: 2.63 SS G_CDS: -2.43 Total: 0.20 kcal Atomic # 7 Polarization: -56.21 SS G_CDS: 0.72 Total: -55.48 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -5.03 Total: 14.96 kcal Atomic # 16 Polarization: -1.15 SS G_CDS: -2.38 Total: -3.53 kcal Total LS contribution 3.68 Total: 3.68 kcal Total: -33.83 -8.30 -42.12 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214772220.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.630 kcal (2) G-P(sol) polarization free energy of solvation -33.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.124 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds