Wall clock time and date at job start Mon Mar 30 2020 03:17:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30898 * 1 3 3 Si 1.86797 * 119.99994 * 2 1 4 4 H 1.48493 * 109.47145 * 274.98166 * 3 2 1 5 5 H 1.48507 * 109.46834 * 34.97748 * 3 2 1 6 6 H 1.48500 * 109.47086 * 154.97858 * 3 2 1 7 7 C 1.39813 * 120.00002 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99863 * 186.03307 * 7 2 1 9 9 C 1.41268 * 120.00139 * 5.75741 * 7 2 1 10 10 N 1.35166 * 125.59550 * 354.57724 * 9 7 2 11 11 C 1.30409 * 109.02999 * 179.97438 * 10 9 7 12 12 N 1.35204 * 109.19074 * 0.39084 * 11 10 9 13 13 N 1.33134 * 125.60040 * 174.27369 * 9 7 2 14 14 C 1.47362 * 126.57133 * 179.02044 * 12 11 10 15 15 C 1.53938 * 107.55135 * 289.74833 * 14 12 11 16 16 C 1.49753 * 111.45110 * 84.19515 * 15 14 12 17 17 C 1.51429 * 118.51019 * 284.01272 * 16 15 14 18 18 S 1.78105 * 127.40765 * 180.52977 * 11 10 9 19 19 H 0.96999 * 120.00055 * 0.02562 * 1 2 3 20 20 H 1.09006 * 109.84197 * 170.23885 * 14 12 11 21 21 H 1.09003 * 109.84104 * 49.26017 * 14 12 11 22 22 H 1.09002 * 109.08409 * 323.69123 * 15 14 12 23 23 H 1.08993 * 109.03507 * 204.66800 * 15 14 12 24 24 H 1.08996 * 107.63241 * 161.71953 * 16 15 14 25 25 H 1.08994 * 107.63281 * 46.30350 * 16 15 14 26 26 H 1.09002 * 109.46446 * 316.44615 * 17 16 15 27 27 H 1.09005 * 109.46454 * 196.47424 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2430 1.6177 0.0000 4 1 2.3852 2.1072 -1.3947 5 1 1.4969 2.6200 0.8027 6 1 3.5892 1.4120 0.5922 7 6 2.0080 -1.2108 0.0005 8 1 3.0835 -1.2133 0.0988 9 6 1.3071 -2.4312 -0.1216 10 7 -0.0375 -2.5676 -0.1415 11 6 -0.3349 -3.8312 -0.2664 12 7 0.8069 -4.5531 -0.3227 13 7 1.8624 -3.6352 -0.2419 14 6 0.9145 -6.0179 -0.4421 15 6 0.4507 -6.6278 0.8930 16 6 -1.0391 -6.7721 0.9410 17 6 -1.8782 -5.5334 1.1743 18 16 -1.9590 -4.5565 -0.3583 19 1 -0.4850 0.8400 -0.0004 20 1 1.9498 -6.2981 -0.6370 21 1 0.2760 -6.3711 -1.2518 22 1 0.7727 -5.9826 1.7105 23 1 0.9079 -7.6099 1.0131 24 1 -1.2765 -7.4851 1.7305 25 1 -1.3585 -7.2141 -0.0027 26 1 -1.4273 -4.9328 1.9644 27 1 -2.8849 -5.8272 1.4714 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214772220.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:28 Heat of formation + Delta-G solvation = 57.484246 kcal Electronic energy + Delta-G solvation = -13415.969330 eV Core-core repulsion = 11107.583739 eV Total energy + Delta-G solvation = -2308.385591 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.063 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.91543 -37.44843 -35.38594 -33.28820 -31.56987 -30.20189 -28.04746 -25.35517 -23.04651 -22.25789 -21.37650 -19.06257 -18.01801 -17.11783 -16.76904 -16.23143 -15.59066 -15.42322 -14.80732 -14.69327 -14.01312 -13.50005 -13.09906 -13.00513 -12.89407 -12.60285 -12.13917 -12.08064 -11.90889 -11.82596 -11.48057 -11.05360 -10.25208 -10.20546 -9.88778 -8.86647 -8.43723 -6.58141 0.37238 0.75784 1.32823 1.40928 1.57176 1.59210 2.16651 2.31922 2.42600 3.47992 3.59713 3.81908 3.87630 4.13447 4.35000 4.44469 4.60431 4.78779 4.84075 4.92311 5.02971 5.15011 5.27641 5.32279 6.04963 6.17131 6.39500 6.78987 6.91552 7.95191 8.53140 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.049091 B = 0.008441 C = 0.007585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 570.231204 B = 3316.193561 C = 3690.575507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.034 3.966 3 Si 1.001 2.999 4 H -0.263 1.263 5 H -0.263 1.263 6 H -0.257 1.257 7 C -0.480 4.480 8 H 0.082 0.918 9 C 0.316 3.684 10 N -0.508 5.508 11 C 0.208 3.792 12 N -0.397 5.397 13 N -0.457 5.457 14 C 0.122 3.878 15 C -0.128 4.128 16 C -0.121 4.121 17 C -0.097 4.097 18 S -0.053 6.053 19 H 0.281 0.719 20 H 0.095 0.905 21 H 0.105 0.895 22 H 0.036 0.964 23 H 0.124 0.876 24 H 0.107 0.893 25 H 0.091 0.909 26 H 0.064 0.936 27 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.507 -11.950 2.051 12.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C -0.185 4.185 3 Si 0.820 3.180 4 H -0.188 1.188 5 H -0.187 1.187 6 H -0.181 1.181 7 C -0.522 4.522 8 H 0.100 0.900 9 C 0.055 3.945 10 N -0.239 5.239 11 C -0.177 4.177 12 N -0.194 5.194 13 N -0.294 5.294 14 C 0.000 4.000 15 C -0.167 4.167 16 C -0.160 4.160 17 C -0.246 4.246 18 S 0.172 5.828 19 H 0.091 0.909 20 H 0.114 0.886 21 H 0.123 0.877 22 H 0.055 0.945 23 H 0.142 0.858 24 H 0.125 0.875 25 H 0.109 0.891 26 H 0.083 0.917 27 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -5.080 -11.733 1.249 12.846 hybrid contribution 1.331 0.724 0.751 1.691 sum -3.749 -11.009 2.000 11.800 Atomic orbital electron populations 1.70177 1.08726 1.29437 1.33691 1.26868 0.95791 1.04336 0.91517 0.84944 0.78704 0.75054 0.79284 1.18769 1.18733 1.18098 1.18641 0.94356 0.88139 1.51082 0.90012 1.21576 0.87217 0.92891 0.92847 1.71607 1.15092 1.13858 1.23303 1.26641 0.94588 0.91649 1.04858 1.50974 1.02821 1.07785 1.57793 1.78518 1.09592 0.99020 1.42228 1.22460 1.04143 0.73273 1.00075 1.21588 0.97362 1.02684 0.95020 1.20876 0.93174 0.96260 1.05723 1.23650 1.06813 0.98714 0.95377 1.85642 1.08831 1.54944 1.33389 0.90901 0.88618 0.87651 0.94519 0.85788 0.87459 0.89064 0.91671 0.83112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -46.80 11.91 21.80 0.26 -46.54 15 2 C 0.03 1.93 5.49 85.21 0.47 2.39 15 3 Si 1.00 41.85 29.56 68.60 2.03 43.88 15 4 H -0.26 -10.56 7.11 99.48 0.71 -9.85 15 5 H -0.26 -10.26 7.11 99.48 0.71 -9.55 15 6 H -0.26 -10.39 7.11 99.48 0.71 -9.69 15 7 C -0.48 -29.58 9.48 23.40 0.22 -29.36 15 8 H 0.08 4.86 7.85 -2.91 -0.02 4.84 15 9 C 0.32 19.98 7.60 134.63 1.02 21.00 15 10 N -0.51 -31.05 9.42 -193.02 -1.82 -32.86 15 11 C 0.21 10.49 7.53 180.24 1.36 11.85 15 12 N -0.40 -18.90 3.62 -343.63 -1.24 -20.14 15 13 N -0.46 -26.64 12.82 -55.96 -0.72 -27.36 15 14 C 0.12 3.91 6.68 86.53 0.58 4.49 15 15 C -0.13 -3.13 5.69 29.87 0.17 -2.95 15 16 C -0.12 -2.37 4.91 29.04 0.14 -2.23 15 17 C -0.10 -2.46 6.11 71.47 0.44 -2.02 15 18 S -0.05 -1.91 22.14 -56.49 -1.25 -3.16 15 19 H 0.28 14.87 8.30 -92.71 -0.77 14.10 15 20 H 0.10 2.93 8.14 -2.38 -0.02 2.91 15 21 H 0.11 2.87 7.76 -2.39 -0.02 2.85 15 22 H 0.04 1.16 8.05 -2.39 -0.02 1.14 15 23 H 0.12 2.01 8.14 -2.39 -0.02 1.99 15 24 H 0.11 1.37 8.13 -2.39 -0.02 1.35 15 25 H 0.09 1.51 7.63 -2.39 -0.02 1.50 15 26 H 0.06 2.03 8.07 -2.39 -0.02 2.01 15 27 H 0.15 2.64 8.14 -2.38 -0.02 2.62 15 Total: -1.00 -79.62 244.50 2.83 -76.80 By element: Atomic # 1 Polarization: 5.04 SS G_CDS: 1.18 Total: 6.22 kcal Atomic # 6 Polarization: -1.23 SS G_CDS: 4.40 Total: 3.17 kcal Atomic # 7 Polarization: -123.38 SS G_CDS: -3.52 Total: -126.90 kcal Atomic # 14 Polarization: 41.85 SS G_CDS: 2.03 Total: 43.88 kcal Atomic # 16 Polarization: -1.91 SS G_CDS: -1.25 Total: -3.16 kcal Total: -79.62 2.83 -76.80 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214772220.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.280 kcal (2) G-P(sol) polarization free energy of solvation -79.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.796 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds