Wall clock time and date at job start Mon Mar 30 2020 02:58:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.36282 * 119.73140 * 2 1 4 4 C 1.41365 * 119.84273 * 180.02562 * 3 2 1 5 5 C 1.40014 * 120.32593 * 179.97438 * 4 3 2 6 6 H 1.07998 * 119.99847 * 324.87466 * 5 4 3 7 7 C 1.46611 * 119.99886 * 144.87909 * 5 4 3 8 8 N 1.29473 * 119.99592 * 339.75597 * 7 5 4 9 9 Si 1.86797 * 119.99972 * 159.75771 * 7 5 4 10 10 H 1.48504 * 109.46933 * 94.94854 * 9 7 5 11 11 H 1.48496 * 109.46859 * 214.94989 * 9 7 5 12 12 H 1.48495 * 109.47064 * 334.94797 * 9 7 5 13 13 C 1.41728 * 119.34176 * 359.97438 * 4 3 2 14 14 F 1.35099 * 120.26415 * 180.02562 * 13 4 3 15 15 C 1.38001 * 119.46271 * 0.02562 * 13 4 3 16 16 C 1.38485 * 120.13545 * 359.97438 * 15 13 4 17 17 N 1.48022 * 119.65822 * 179.97438 * 16 15 13 18 18 O 1.31700 * 120.00037 * 353.14010 * 17 16 15 19 19 O 1.31698 * 119.99766 * 173.14841 * 17 16 15 20 20 H 1.08997 * 109.47285 * 263.09689 * 1 2 3 21 21 H 1.09002 * 109.47448 * 23.09458 * 1 2 3 22 22 H 1.09000 * 109.47396 * 143.09962 * 1 2 3 23 23 H 1.07998 * 120.07340 * 0.04209 * 3 2 1 24 24 H 0.97003 * 119.99652 * 180.02562 * 8 7 5 25 25 H 1.08001 * 119.93146 * 180.27458 * 15 13 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1828 1.1834 0.0000 4 6 3.5964 1.1862 -0.0005 5 6 4.3010 2.3961 -0.0011 6 1 3.9115 3.2476 -0.5393 7 6 5.5677 2.5071 0.7289 8 7 5.8475 1.6647 1.6714 9 14 6.7776 3.8638 0.2990 10 1 6.5630 5.0228 1.2023 11 1 8.1648 3.3596 0.4616 12 1 6.5667 4.2874 -1.1085 13 6 4.2933 -0.0479 -0.0005 14 9 5.6442 -0.0671 -0.0005 15 6 3.5808 -1.2298 -0.0005 16 6 2.1962 -1.2069 0.0000 17 7 1.4425 -2.4809 -0.0006 18 8 2.0818 -3.6241 -0.1378 19 8 0.1327 -2.4711 0.1360 20 1 -0.3634 -0.1235 1.0202 21 1 -0.3634 0.9453 -0.4031 22 1 -0.3634 -0.8218 -0.6170 23 1 1.6396 2.1169 0.0007 24 1 6.6854 1.7383 2.1546 25 1 4.1042 -2.1745 0.0040 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000218129563.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:04 Heat of formation + Delta-G solvation = -18.405392 kcal Electronic energy + Delta-G solvation = -15080.344731 eV Core-core repulsion = 12170.162391 eV Total energy + Delta-G solvation = -2910.182340 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 225.059 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -47.55237 -38.72684 -36.76344 -34.52156 -33.24810 -31.47981 -30.95706 -27.11164 -26.15936 -23.67912 -21.45818 -20.87417 -18.10196 -17.39823 -16.80999 -16.00909 -15.13912 -14.79711 -14.51760 -14.37514 -14.17404 -13.13908 -12.74968 -12.67961 -12.52209 -12.10237 -11.86629 -11.56447 -11.23827 -10.89848 -10.71661 -10.32122 -9.90103 -9.86074 -9.56717 -9.24933 -8.46830 -7.86927 -7.73958 -5.27448 0.61790 2.26134 2.30105 2.59452 2.67616 2.68268 2.71066 3.28156 3.74222 4.59542 5.34497 5.49909 5.62722 5.90066 6.03007 6.18204 6.26329 6.37724 6.49543 6.59795 6.82811 6.98974 7.02679 7.25298 7.38545 7.56017 7.63809 8.03914 8.26780 9.09184 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.048209 B = 0.008424 C = 0.007424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 580.661932 B = 3322.935695 C = 3770.507878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.007 3.993 3 C -0.201 4.201 4 C 0.084 3.916 5 C -0.363 4.363 6 H 0.112 0.888 7 C 0.056 3.944 8 N -0.692 5.692 9 Si 0.933 3.067 10 H -0.259 1.259 11 H -0.264 1.264 12 H -0.248 1.248 13 C 0.034 3.966 14 F -0.135 7.135 15 C -0.071 4.071 16 C -0.110 4.110 17 N 0.042 4.958 18 O -0.303 6.303 19 O -0.285 6.285 20 H 0.071 0.929 21 H 0.054 0.946 22 H 0.092 0.908 23 H 0.125 0.875 24 H 0.309 0.691 25 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.010 6.888 -0.974 7.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.005 3.995 3 C -0.222 4.222 4 C 0.079 3.921 5 C -0.386 4.386 6 H 0.130 0.870 7 C -0.178 4.178 8 N -0.309 5.309 9 Si 0.753 3.247 10 H -0.183 1.183 11 H -0.188 1.188 12 H -0.171 1.171 13 C 0.012 3.988 14 F -0.113 7.113 15 C -0.092 4.092 16 C -0.210 4.210 17 N 0.474 4.526 18 O -0.462 6.462 19 O -0.447 6.447 20 H 0.090 0.910 21 H 0.073 0.927 22 H 0.111 0.889 23 H 0.143 0.857 24 H 0.122 0.878 25 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 2.354 6.991 -0.768 7.417 hybrid contribution 0.699 -0.044 0.093 0.707 sum 3.054 6.948 -0.674 7.619 Atomic orbital electron populations 1.21222 0.90771 1.02563 1.03293 1.19041 0.96145 0.90595 0.93735 1.20481 0.92403 0.95801 1.13503 1.17860 0.92122 0.91899 0.90206 1.21442 1.00193 0.97735 1.19270 0.86979 1.27799 0.98621 0.98157 0.93255 1.69013 1.22974 1.28958 1.09971 0.85841 0.78319 0.79102 0.81392 1.18322 1.18816 1.17071 1.17495 0.76843 0.92597 1.11890 1.91371 1.28619 1.97086 1.94257 1.20215 0.91693 0.98150 0.99108 1.19088 0.89923 0.80281 1.31699 1.49963 1.02118 1.03783 0.96724 1.96130 1.70066 1.17136 1.62916 1.96029 0.91298 1.95612 1.61772 0.91035 0.92683 0.88926 0.85665 0.87801 0.85154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.28 8.57 36.00 0.31 -1.97 15 2 C 0.01 0.15 5.84 -105.05 -0.61 -0.47 15 3 C -0.20 -4.17 9.36 -39.10 -0.37 -4.53 15 4 C 0.08 1.87 5.47 -106.71 -0.58 1.28 15 5 C -0.36 -7.48 9.18 -35.54 -0.33 -7.80 15 6 H 0.11 2.05 8.00 -52.49 -0.42 1.63 15 7 C 0.06 1.10 4.67 -15.17 -0.07 1.03 15 8 N -0.69 -14.48 11.14 55.99 0.62 -13.85 15 9 Si 0.93 14.23 29.68 -169.99 -5.05 9.19 15 10 H -0.26 -3.82 7.11 56.52 0.40 -3.42 15 11 H -0.26 -4.03 7.11 56.52 0.40 -3.63 15 12 H -0.25 -3.74 7.11 56.52 0.40 -3.34 15 13 C 0.03 0.79 6.77 -38.34 -0.26 0.53 15 14 F -0.13 -3.15 14.18 2.25 0.03 -3.12 15 15 C -0.07 -1.67 9.54 -39.58 -0.38 -2.05 15 16 C -0.11 -2.64 6.88 -79.58 -0.55 -3.19 15 17 N 0.04 1.08 4.98 34.14 0.17 1.25 15 18 O -0.30 -8.05 19.14 -31.57 -0.60 -8.65 15 19 O -0.28 -7.11 15.89 -31.57 -0.50 -7.61 15 20 H 0.07 1.30 8.14 -51.93 -0.42 0.88 15 21 H 0.05 0.86 8.01 -51.93 -0.42 0.44 15 22 H 0.09 1.85 5.74 -51.93 -0.30 1.55 15 23 H 0.13 2.25 8.03 -52.49 -0.42 1.83 15 24 H 0.31 5.65 8.27 -40.82 -0.34 5.31 15 25 H 0.13 2.99 7.57 -52.49 -0.40 2.59 15 LS Contribution 236.36 15.07 3.56 3.56 Total: -1.00 -26.45 236.36 -6.11 -32.56 By element: Atomic # 1 Polarization: 5.34 SS G_CDS: -1.51 Total: 3.83 kcal Atomic # 6 Polarization: -14.33 SS G_CDS: -2.84 Total: -17.16 kcal Atomic # 7 Polarization: -13.39 SS G_CDS: 0.79 Total: -12.60 kcal Atomic # 8 Polarization: -15.16 SS G_CDS: -1.11 Total: -16.26 kcal Atomic # 9 Polarization: -3.15 SS G_CDS: 0.03 Total: -3.12 kcal Atomic # 14 Polarization: 14.23 SS G_CDS: -5.05 Total: 9.19 kcal Total LS contribution 3.56 Total: 3.56 kcal Total: -26.45 -6.11 -32.56 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218129563.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.157 kcal (2) G-P(sol) polarization free energy of solvation -26.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds