Wall clock time and date at job start Mon Mar 30 2020 03:33:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38296 * 119.95038 * 2 1 4 4 C 1.38275 * 120.15514 * 180.29819 * 3 2 1 5 5 C 1.38216 * 120.05817 * 359.44562 * 4 3 2 6 6 Cl 1.73605 * 120.04664 * 180.25161 * 5 4 3 7 7 C 1.38987 * 119.90716 * 0.27971 * 5 4 3 8 8 N 1.39753 * 120.07596 * 180.02562 * 7 5 4 9 9 C 1.46501 * 119.99786 * 179.97438 * 8 7 5 10 10 C 1.50699 * 109.47024 * 179.97438 * 9 8 7 11 11 H 1.08000 * 120.00120 * 0.02562 * 10 9 8 12 12 C 1.37875 * 119.99697 * 179.97438 * 10 9 8 13 13 N 1.31510 * 120.00301 * 0.02562 * 12 10 9 14 14 Si 1.86802 * 119.99694 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47127 * 0.02562 * 14 12 10 16 16 H 1.48506 * 109.46970 * 120.00211 * 14 12 10 17 17 H 1.48505 * 109.47046 * 239.99803 * 14 12 10 18 18 C 1.38115 * 119.95470 * 179.74509 * 2 1 3 19 19 H 1.09000 * 109.47037 * 270.25340 * 1 2 3 20 20 H 1.08995 * 109.47539 * 30.25163 * 1 2 3 21 21 H 1.09005 * 109.47118 * 150.25669 * 1 2 3 22 22 H 1.07996 * 119.92391 * 0.04535 * 3 2 1 23 23 H 1.08002 * 119.97295 * 179.72704 * 4 3 2 24 24 H 0.96993 * 120.00050 * 359.97438 * 8 7 5 25 25 H 1.09003 * 109.47110 * 299.99616 * 9 8 7 26 26 H 1.09003 * 109.46895 * 59.99444 * 9 8 7 27 27 H 0.97001 * 120.00218 * 180.02562 * 13 12 10 28 28 H 1.07999 * 120.03410 * 359.97438 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1974 1.1983 0.0000 4 6 3.5801 1.2032 -0.0062 5 6 4.2767 0.0095 -0.0009 6 17 6.0127 0.0161 -0.0021 7 6 3.5854 -1.1963 0.0049 8 7 4.2862 -2.4054 0.0108 9 6 3.5558 -3.6753 0.0174 10 6 4.5369 -4.8191 0.0223 11 1 5.5984 -4.6200 0.0211 12 6 4.0794 -6.1197 0.0294 13 7 2.7869 -6.3621 0.0315 14 14 5.2957 -7.5375 0.0362 15 1 6.6806 -7.0017 0.0333 16 1 5.0872 -8.3626 1.2533 17 1 5.0859 -8.3754 -1.1717 18 6 2.1966 -1.1966 0.0053 19 1 -0.3633 0.0045 1.0277 20 1 -0.3634 0.8876 -0.5177 21 1 -0.3633 -0.8923 -0.5099 22 1 1.6554 2.1324 0.0007 23 1 4.1163 2.1407 -0.0107 24 1 5.2561 -2.4038 0.0105 25 1 2.9295 -3.7296 0.9079 26 1 2.9289 -3.7385 -0.8721 27 1 2.4650 -7.2772 0.0368 28 1 1.6564 -2.1318 0.0099 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000227557066.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:28 Heat of formation + Delta-G solvation = -0.139743 kcal Electronic energy + Delta-G solvation = -12784.416936 eV Core-core repulsion = 10439.196123 eV Total energy + Delta-G solvation = -2345.220812 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.062 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.10479 -36.02520 -35.26782 -32.79216 -31.82251 -29.24334 -26.91388 -26.01000 -23.15646 -21.05796 -20.68388 -17.22557 -16.27247 -15.54304 -15.22905 -14.50567 -13.86772 -13.68466 -13.17709 -13.03475 -12.96549 -12.25428 -12.22948 -11.87483 -11.37809 -11.04821 -10.92528 -10.85709 -10.75494 -10.43769 -10.15506 -9.51006 -9.41732 -8.58100 -8.21535 -6.66526 -6.24291 -4.29355 1.65995 2.03507 2.67695 3.20647 3.28292 3.32375 4.16883 4.20787 4.46383 5.13375 5.16257 5.21877 5.57777 5.65865 5.82215 5.90615 5.98280 6.22954 6.35136 6.62823 6.66701 6.97344 7.06439 7.29550 7.35712 7.59493 7.88951 8.16907 8.57698 8.83882 9.37188 10.86381 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.029046 B = 0.007548 C = 0.006018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.757253 B = 3708.563725 C = 4651.872906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.034 4.034 3 C -0.196 4.196 4 C -0.058 4.058 5 C -0.139 4.139 6 Cl -0.090 7.090 7 C 0.247 3.753 8 N -0.720 5.720 9 C 0.249 3.751 10 C -0.539 4.539 11 H 0.063 0.937 12 C 0.065 3.935 13 N -0.889 5.889 14 Si 0.904 3.096 15 H -0.271 1.271 16 H -0.281 1.281 17 H -0.281 1.281 18 C -0.194 4.194 19 H 0.069 0.931 20 H 0.063 0.937 21 H 0.067 0.933 22 H 0.117 0.883 23 H 0.122 0.878 24 H 0.396 0.604 25 H 0.023 0.977 26 H 0.023 0.977 27 H 0.266 0.734 28 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.201 12.121 -0.037 12.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.035 4.035 3 C -0.217 4.217 4 C -0.078 4.078 5 C -0.171 4.171 6 Cl -0.062 7.062 7 C 0.135 3.865 8 N -0.342 5.342 9 C 0.128 3.872 10 C -0.577 4.577 11 H 0.081 0.919 12 C -0.139 4.139 13 N -0.527 5.527 14 Si 0.731 3.269 15 H -0.196 1.196 16 H -0.207 1.207 17 H -0.207 1.207 18 C -0.218 4.218 19 H 0.088 0.912 20 H 0.082 0.918 21 H 0.086 0.914 22 H 0.135 0.865 23 H 0.140 0.860 24 H 0.231 0.769 25 H 0.041 0.959 26 H 0.041 0.959 27 H 0.075 0.925 28 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -1.274 11.697 -0.037 11.766 hybrid contribution 1.148 -0.873 0.011 1.442 sum -0.126 10.823 -0.026 10.824 Atomic orbital electron populations 1.20786 0.91515 1.02530 1.02172 1.19683 0.95622 0.92597 0.95600 1.20484 0.92985 0.97183 1.11037 1.20615 0.94003 0.95587 0.97561 1.20273 0.83136 0.93989 1.19670 1.98296 1.11512 1.98657 1.97690 1.17778 0.91565 0.85798 0.91371 1.45709 1.08877 1.03525 1.76063 1.19188 0.92822 0.78424 0.96804 1.21218 0.93158 0.90600 1.52730 0.91880 1.24913 0.95480 0.98907 0.94562 1.69947 1.12617 1.20758 1.49350 0.86352 0.81064 0.81724 0.77782 1.19590 1.20733 1.20726 1.20577 0.91440 0.98621 1.11144 0.91223 0.91804 0.91415 0.86453 0.86039 0.76891 0.95886 0.95886 0.92476 0.84948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.38 10.01 36.00 0.36 -1.02 15 2 C -0.03 -0.53 5.88 -104.65 -0.62 -1.14 15 3 C -0.20 -2.82 9.70 -39.55 -0.38 -3.21 15 4 C -0.06 -0.89 9.82 -39.58 -0.39 -1.27 15 5 C -0.14 -2.44 6.34 -39.31 -0.25 -2.69 15 6 Cl -0.09 -1.48 27.60 -51.86 -1.43 -2.91 15 7 C 0.25 4.89 6.65 -83.73 -0.56 4.33 15 8 N -0.72 -15.79 5.68 -59.77 -0.34 -16.13 15 9 C 0.25 6.31 4.67 -5.19 -0.02 6.28 15 10 C -0.54 -14.66 9.28 -34.44 -0.32 -14.98 15 11 H 0.06 1.68 7.60 -52.49 -0.40 1.28 15 12 C 0.06 1.77 5.46 -17.82 -0.10 1.67 15 13 N -0.89 -25.34 13.29 55.43 0.74 -24.60 15 14 Si 0.90 20.91 29.54 -169.99 -5.02 15.89 15 15 H -0.27 -6.18 7.11 56.52 0.40 -5.78 15 16 H -0.28 -6.45 7.11 56.52 0.40 -6.05 15 17 H -0.28 -6.45 7.11 56.52 0.40 -6.04 15 18 C -0.19 -3.62 8.96 -39.39 -0.35 -3.98 15 19 H 0.07 0.78 8.14 -51.93 -0.42 0.36 15 20 H 0.06 0.65 8.09 -51.93 -0.42 0.23 15 21 H 0.07 0.82 8.08 -51.93 -0.42 0.40 15 22 H 0.12 1.36 8.06 -52.49 -0.42 0.94 15 23 H 0.12 1.54 8.06 -52.49 -0.42 1.12 15 24 H 0.40 8.45 7.00 -40.82 -0.29 8.17 15 25 H 0.02 0.62 7.95 -51.93 -0.41 0.21 15 26 H 0.02 0.62 7.95 -51.93 -0.41 0.21 15 27 H 0.27 7.11 8.31 -40.82 -0.34 6.77 15 28 H 0.13 2.60 6.74 -52.49 -0.35 2.24 15 LS Contribution 260.15 15.07 3.92 3.92 Total: -1.00 -27.91 260.15 -7.87 -35.78 By element: Atomic # 1 Polarization: 7.17 SS G_CDS: -3.11 Total: 4.06 kcal Atomic # 6 Polarization: -13.38 SS G_CDS: -2.63 Total: -16.00 kcal Atomic # 7 Polarization: -41.13 SS G_CDS: 0.40 Total: -40.74 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Atomic # 17 Polarization: -1.48 SS G_CDS: -1.43 Total: -2.91 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -27.91 -7.87 -35.78 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227557066.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.636 kcal (2) G-P(sol) polarization free energy of solvation -27.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds