Wall clock time and date at job start Mon Mar 30 2020 02:50:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.47196 * 239.99713 * 3 2 1 5 5 H 1.48504 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47679 * 119.99347 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 11 11 C 1.38222 * 120.00793 * 264.99782 * 10 9 7 12 12 C 1.38231 * 120.02124 * 179.97438 * 11 10 9 13 13 C 1.38264 * 120.05039 * 0.04281 * 12 11 10 14 14 C 1.38175 * 120.02880 * 359.95704 * 13 12 11 15 15 N 1.48000 * 120.01483 * 180.02562 * 14 13 12 16 16 O 1.21806 * 119.99712 * 359.97438 * 15 14 13 17 17 O 1.21794 * 120.00156 * 179.97438 * 15 14 13 18 18 C 1.38431 * 120.01223 * 84.72429 * 10 9 7 19 19 F 1.35095 * 120.02783 * 0.02562 * 18 10 9 20 20 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 21 21 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 22 22 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 23 23 H 1.07998 * 119.99398 * 359.97438 * 11 10 9 24 24 H 1.08006 * 119.97301 * 180.02562 * 12 11 10 25 25 H 1.08000 * 119.98565 * 179.97438 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2302 -3.6447 -0.0104 11 6 2.6002 -4.2326 -1.2053 12 6 3.4988 -5.2829 -1.2103 13 6 4.0279 -5.7471 -0.0202 14 6 3.6594 -5.1609 1.1756 15 7 4.2263 -5.6577 2.4492 16 8 5.0175 -6.5838 2.4435 17 8 3.9018 -5.1405 3.5031 18 6 2.7638 -4.1046 1.1813 19 9 2.4067 -3.5274 2.3493 20 1 -0.4850 0.8401 -0.0004 21 1 0.6242 -2.5609 0.8844 22 1 0.6244 -2.5529 -0.8956 23 1 2.1871 -3.8713 -2.1355 24 1 3.7877 -5.7415 -2.1445 25 1 4.7296 -6.5681 -0.0253 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000229799663.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:28 Heat of formation + Delta-G solvation = -51.092252 kcal Electronic energy + Delta-G solvation = -14939.746743 eV Core-core repulsion = 12028.146995 eV Total energy + Delta-G solvation = -2911.599749 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 225.059 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -50.21724 -43.27404 -40.31514 -37.71895 -35.73496 -33.66151 -32.37050 -29.33991 -27.64248 -25.62399 -23.61670 -22.74178 -20.12306 -19.80730 -18.84368 -18.65213 -18.53207 -17.54331 -16.80235 -16.67820 -15.95907 -14.87630 -14.55834 -14.49896 -13.78629 -13.61303 -13.28215 -13.12794 -12.80780 -12.66075 -12.52875 -12.36469 -12.21289 -11.76985 -11.74350 -10.67877 -10.51878 -9.90971 -8.29679 -6.42987 -1.29117 -0.09648 0.23531 0.25720 1.36966 1.39813 1.47319 2.21228 2.38106 2.71177 3.03772 3.38851 3.60175 3.92999 3.96978 4.18587 4.56973 4.74327 4.93988 5.03464 5.10567 5.19205 5.45525 5.53649 5.61615 6.00137 6.44450 6.66974 7.26476 8.80202 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.035659 B = 0.008078 C = 0.007324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.033974 B = 3465.510570 C = 3822.243033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.013 3.987 3 Si 0.961 3.039 4 H -0.259 1.259 5 H -0.279 1.279 6 H -0.277 1.277 7 C -0.538 4.538 8 H 0.054 0.946 9 C 0.057 3.943 10 C -0.099 4.099 11 C -0.034 4.034 12 C -0.098 4.098 13 C -0.038 4.038 14 C -0.101 4.101 15 N 0.035 4.965 16 O -0.123 6.123 17 O -0.229 6.229 18 C 0.131 3.869 19 F -0.128 7.128 20 H 0.268 0.732 21 H 0.001 0.999 22 H 0.037 0.963 23 H 0.172 0.828 24 H 0.207 0.793 25 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.261 -10.807 -5.969 14.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.187 4.187 3 Si 0.786 3.214 4 H -0.184 1.184 5 H -0.204 1.204 6 H -0.203 1.203 7 C -0.576 4.576 8 H 0.072 0.928 9 C 0.020 3.980 10 C -0.101 4.101 11 C -0.052 4.052 12 C -0.116 4.116 13 C -0.057 4.057 14 C -0.186 4.186 15 N 0.550 4.450 16 O -0.352 6.352 17 O -0.427 6.427 18 C 0.110 3.890 19 F -0.106 7.106 20 H 0.077 0.923 21 H 0.019 0.981 22 H 0.056 0.944 23 H 0.189 0.811 24 H 0.224 0.776 25 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 6.743 -10.335 -6.423 13.912 hybrid contribution 0.006 1.178 1.237 1.708 sum 6.749 -9.157 -5.186 12.502 Atomic orbital electron populations 1.70036 1.07533 1.28312 1.50350 1.25829 0.95736 1.02931 0.94193 0.85551 0.78430 0.78311 0.79138 1.18359 1.20393 1.20283 1.21245 0.92982 0.91053 1.52299 0.92776 1.18089 0.92519 0.89810 0.97549 1.20715 0.99687 0.98248 0.91452 1.21868 0.93480 0.92529 0.97329 1.21790 0.95249 0.95618 0.98959 1.21423 0.97688 0.98733 0.87823 1.21512 1.07413 1.03967 0.85718 1.43630 0.98972 0.99305 1.03073 1.94406 1.27756 1.19122 1.93877 1.94641 1.66402 1.61356 1.20350 1.17683 0.95971 0.92177 0.83146 1.91555 1.89915 1.83148 1.45976 0.92293 0.98087 0.94447 0.81086 0.77629 0.79088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.55 13.29 21.45 0.28 -53.26 15 2 C 0.01 0.70 5.46 84.66 0.46 1.16 15 3 Si 0.96 43.00 29.54 68.60 2.03 45.02 15 4 H -0.26 -10.86 7.11 99.48 0.71 -10.16 15 5 H -0.28 -12.13 7.11 99.48 0.71 -11.42 15 6 H -0.28 -12.45 7.11 99.48 0.71 -11.75 15 7 C -0.54 -29.20 9.09 25.60 0.23 -28.97 15 8 H 0.05 2.89 7.74 -2.91 -0.02 2.87 15 9 C 0.06 2.83 4.87 29.10 0.14 2.97 15 10 C -0.10 -3.86 5.08 -19.82 -0.10 -3.96 15 11 C -0.03 -0.90 9.68 22.26 0.22 -0.68 15 12 C -0.10 -1.75 10.04 22.27 0.22 -1.52 15 13 C -0.04 -0.84 9.55 22.26 0.21 -0.62 15 14 C -0.10 -3.39 6.86 36.42 0.25 -3.14 15 15 N 0.04 1.29 4.45 -46.37 -0.21 1.09 15 16 O -0.12 -4.00 18.45 18.88 0.35 -3.65 15 17 O -0.23 -9.76 17.43 18.89 0.33 -9.43 15 18 C 0.13 5.32 7.19 22.38 0.16 5.48 15 19 F -0.13 -6.14 14.79 44.97 0.67 -5.48 15 20 H 0.27 14.66 8.31 -92.70 -0.77 13.89 15 21 H 0.00 0.05 7.80 -2.38 -0.02 0.03 15 22 H 0.04 1.83 8.05 -2.39 -0.02 1.81 15 23 H 0.17 3.74 8.06 -2.91 -0.02 3.71 15 24 H 0.21 1.40 8.06 -2.91 -0.02 1.37 15 25 H 0.19 2.81 7.61 -2.91 -0.02 2.79 15 Total: -1.00 -68.33 242.72 6.47 -61.86 By element: Atomic # 1 Polarization: -8.08 SS G_CDS: 1.22 Total: -6.86 kcal Atomic # 6 Polarization: -31.09 SS G_CDS: 1.80 Total: -29.29 kcal Atomic # 7 Polarization: -52.25 SS G_CDS: 0.08 Total: -52.18 kcal Atomic # 8 Polarization: -13.76 SS G_CDS: 0.68 Total: -13.08 kcal Atomic # 9 Polarization: -6.14 SS G_CDS: 0.67 Total: -5.48 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.02 kcal Total: -68.33 6.47 -61.86 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229799663.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.770 kcal (2) G-P(sol) polarization free energy of solvation -68.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds