Wall clock time and date at job start Mon Mar 30 2020 02:57:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36280 * 119.86795 * 2 1 4 4 C 1.41422 * 119.73343 * 180.02562 * 3 2 1 5 5 C 1.40030 * 120.25919 * 179.97438 * 4 3 2 6 6 H 1.07995 * 120.00066 * 215.92448 * 5 4 3 7 7 C 1.46586 * 119.99506 * 35.92673 * 5 4 3 8 8 N 1.29482 * 120.00339 * 11.96301 * 7 5 4 9 9 Si 1.86805 * 119.99591 * 191.96599 * 7 5 4 10 10 H 1.48496 * 109.46962 * 60.00020 * 9 7 5 11 11 H 1.48503 * 109.46808 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47386 * 299.99895 * 9 7 5 13 13 C 1.41465 * 119.48801 * 359.97438 * 4 3 2 14 14 N 1.48012 * 120.13653 * 180.02562 * 13 4 3 15 15 O 1.31699 * 120.00150 * 186.14671 * 14 13 4 16 16 O 1.31706 * 120.00047 * 6.15151 * 14 13 4 17 17 C 1.36243 * 119.72799 * 0.02562 * 13 4 3 18 18 C 1.39246 * 119.86992 * 180.02562 * 2 1 3 19 19 F 1.35100 * 119.73920 * 359.97438 * 18 2 1 20 20 H 1.09001 * 109.46832 * 90.00695 * 1 2 3 21 21 H 1.09000 * 109.46865 * 209.99946 * 1 2 3 22 22 H 1.09000 * 109.47193 * 330.00614 * 1 2 3 23 23 H 1.08002 * 120.13433 * 0.03318 * 3 2 1 24 24 H 0.97006 * 119.99921 * 179.97438 * 8 7 5 25 25 H 1.08000 * 119.86618 * 179.72544 * 17 13 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1857 1.1818 0.0000 4 6 3.5999 1.1785 -0.0005 5 6 4.3084 2.3863 -0.0011 6 1 5.2347 2.4688 -0.5502 7 6 3.7927 3.5387 0.7437 8 7 2.8190 3.3841 1.5832 9 14 4.5403 5.2305 0.4818 10 1 4.3858 5.6249 -0.9415 11 1 3.8457 6.2178 1.3467 12 1 5.9830 5.1938 0.8315 13 6 4.2934 -0.0546 -0.0005 14 7 5.7734 -0.0748 -0.0005 15 8 6.4163 -1.2177 -0.1227 16 8 6.4473 1.0501 0.1217 17 6 3.5933 -1.2234 -0.0005 18 6 2.2005 -1.2075 -0.0005 19 9 1.5171 -2.3728 -0.0005 20 1 -0.3633 -0.0001 -1.0277 21 1 -0.3633 -0.8900 0.5138 22 1 -0.3633 0.8900 0.5137 23 1 1.6457 2.1171 0.0005 24 1 2.4781 4.1467 2.0763 25 1 4.1205 -2.1660 -0.0050 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000235762489.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:46 Heat of formation + Delta-G solvation = -26.040401 kcal Electronic energy + Delta-G solvation = -15089.639943 eV Core-core repulsion = 12179.126525 eV Total energy + Delta-G solvation = -2910.513419 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 225.059 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -47.93842 -38.61360 -36.56917 -34.52207 -32.69680 -32.21767 -30.26859 -27.30791 -25.93316 -23.65339 -21.91183 -20.33366 -18.20723 -17.23256 -16.69269 -15.87416 -15.11386 -14.86028 -14.63849 -14.34625 -14.18694 -13.21793 -12.85075 -12.69195 -12.48837 -11.99442 -11.81667 -11.62427 -11.19081 -10.83952 -10.68703 -10.47082 -9.91037 -9.59688 -9.27636 -9.13276 -8.33329 -7.97082 -7.70673 -5.16154 0.84707 2.09995 2.56927 2.68182 2.72152 2.78590 2.95532 3.39915 3.75689 4.63796 5.22117 5.44509 5.57319 5.80793 6.00269 6.07962 6.15702 6.29778 6.35986 6.55266 6.80374 6.98422 7.14081 7.32562 7.44332 7.68026 7.86391 8.04593 8.61231 9.10788 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.023569 B = 0.012284 C = 0.008308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.738781 B = 2278.896075 C = 3369.290338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.087 4.087 3 C -0.101 4.101 4 C 0.088 3.912 5 C -0.319 4.319 6 H 0.130 0.870 7 C 0.057 3.943 8 N -0.711 5.711 9 Si 0.938 3.062 10 H -0.251 1.251 11 H -0.269 1.269 12 H -0.246 1.246 13 C -0.091 4.091 14 N 0.038 4.962 15 O -0.341 6.341 16 O -0.265 6.265 17 C -0.058 4.058 18 C -0.015 4.015 19 F -0.155 7.155 20 H 0.064 0.936 21 H 0.062 0.938 22 H 0.066 0.934 23 H 0.133 0.867 24 H 0.308 0.692 25 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.435 3.935 -0.846 7.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.089 4.089 3 C -0.120 4.120 4 C 0.083 3.917 5 C -0.346 4.346 6 H 0.147 0.853 7 C -0.175 4.175 8 N -0.332 5.332 9 Si 0.758 3.242 10 H -0.174 1.174 11 H -0.193 1.193 12 H -0.170 1.170 13 C -0.192 4.192 14 N 0.463 4.537 15 O -0.488 6.488 16 O -0.430 6.430 17 C -0.078 4.078 18 C -0.037 4.037 19 F -0.134 7.134 20 H 0.083 0.917 21 H 0.081 0.919 22 H 0.085 0.915 23 H 0.151 0.849 24 H 0.121 0.879 25 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -6.853 3.824 -0.673 7.877 hybrid contribution 0.517 0.289 0.115 0.603 sum -6.336 4.112 -0.558 7.574 Atomic orbital electron populations 1.20648 0.91447 1.02433 1.01779 1.19467 0.95894 0.92113 1.01419 1.20851 0.92365 0.96470 1.02308 1.17250 0.91970 0.90620 0.91876 1.22226 1.05586 0.91562 1.15216 0.85258 1.28015 0.93352 1.03254 0.92914 1.69046 1.16290 1.36116 1.11709 0.85807 0.81378 0.76352 0.80641 1.17419 1.19306 1.16952 1.19400 0.76189 0.95067 1.28505 1.49679 1.03962 1.01399 0.98673 1.96093 1.71782 1.15544 1.65401 1.96058 1.69363 1.17295 1.60266 1.19978 0.92217 0.97870 0.97783 1.16877 0.88130 0.80682 1.18046 1.91337 1.79725 1.46939 1.95421 0.91701 0.91881 0.91487 0.84882 0.87933 0.85128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.68 9.82 36.01 0.35 -1.32 15 2 C -0.09 -1.76 5.85 -104.95 -0.61 -2.37 15 3 C -0.10 -2.15 8.28 -39.08 -0.32 -2.47 15 4 C 0.09 2.12 5.49 -106.78 -0.59 1.53 15 5 C -0.32 -7.42 7.80 -35.55 -0.28 -7.70 15 6 H 0.13 3.11 5.96 -52.49 -0.31 2.79 15 7 C 0.06 1.15 5.35 -15.18 -0.08 1.07 15 8 N -0.71 -14.30 11.57 55.99 0.65 -13.65 15 9 Si 0.94 15.13 29.66 -169.99 -5.04 10.09 15 10 H -0.25 -3.94 7.11 56.52 0.40 -3.54 15 11 H -0.27 -4.04 7.11 56.52 0.40 -3.64 15 12 H -0.25 -4.17 7.11 56.52 0.40 -3.77 15 13 C -0.09 -2.31 6.89 -79.44 -0.55 -2.85 15 14 N 0.04 1.07 4.98 34.21 0.17 1.24 15 15 O -0.34 -9.67 19.15 -31.57 -0.60 -10.28 15 16 O -0.27 -7.40 16.29 -31.57 -0.51 -7.92 15 17 C -0.06 -1.36 9.51 -39.91 -0.38 -1.74 15 18 C -0.02 -0.33 7.29 -38.82 -0.28 -0.61 15 19 F -0.16 -3.15 16.46 2.25 0.04 -3.11 15 20 H 0.06 0.91 8.14 -51.93 -0.42 0.49 15 21 H 0.06 0.95 7.63 -51.93 -0.40 0.56 15 22 H 0.07 0.96 8.08 -51.93 -0.42 0.54 15 23 H 0.13 2.67 6.88 -52.49 -0.36 2.31 15 24 H 0.31 5.32 8.27 -40.82 -0.34 4.98 15 25 H 0.13 2.96 7.56 -52.49 -0.40 2.57 15 LS Contribution 238.22 15.07 3.59 3.59 Total: -1.00 -27.34 238.22 -5.89 -33.23 By element: Atomic # 1 Polarization: 4.73 SS G_CDS: -1.44 Total: 3.29 kcal Atomic # 6 Polarization: -13.73 SS G_CDS: -2.74 Total: -16.47 kcal Atomic # 7 Polarization: -13.23 SS G_CDS: 0.82 Total: -12.41 kcal Atomic # 8 Polarization: -17.08 SS G_CDS: -1.12 Total: -18.20 kcal Atomic # 9 Polarization: -3.15 SS G_CDS: 0.04 Total: -3.11 kcal Atomic # 14 Polarization: 15.13 SS G_CDS: -5.04 Total: 10.09 kcal Total LS contribution 3.59 Total: 3.59 kcal Total: -27.34 -5.89 -33.23 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235762489.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.192 kcal (2) G-P(sol) polarization free energy of solvation -27.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds