Wall clock time and date at job start Mon Mar 30 2020 02:57:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36280 * 119.86795 * 2 1 4 4 C 1.41422 * 119.73343 * 180.02562 * 3 2 1 5 5 C 1.40030 * 120.25919 * 179.97438 * 4 3 2 6 6 H 1.07995 * 120.00066 * 215.92448 * 5 4 3 7 7 C 1.46586 * 119.99506 * 35.92673 * 5 4 3 8 8 N 1.29482 * 120.00339 * 11.96301 * 7 5 4 9 9 Si 1.86805 * 119.99591 * 191.96599 * 7 5 4 10 10 H 1.48496 * 109.46962 * 60.00020 * 9 7 5 11 11 H 1.48503 * 109.46808 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47386 * 299.99895 * 9 7 5 13 13 C 1.41465 * 119.48801 * 359.97438 * 4 3 2 14 14 N 1.48012 * 120.13653 * 180.02562 * 13 4 3 15 15 O 1.31699 * 120.00150 * 186.14671 * 14 13 4 16 16 O 1.31706 * 120.00047 * 6.15151 * 14 13 4 17 17 C 1.36243 * 119.72799 * 0.02562 * 13 4 3 18 18 C 1.39246 * 119.86992 * 180.02562 * 2 1 3 19 19 F 1.35100 * 119.73920 * 359.97438 * 18 2 1 20 20 H 1.09001 * 109.46832 * 90.00695 * 1 2 3 21 21 H 1.09000 * 109.46865 * 209.99946 * 1 2 3 22 22 H 1.09000 * 109.47193 * 330.00614 * 1 2 3 23 23 H 1.08002 * 120.13433 * 0.03318 * 3 2 1 24 24 H 0.97006 * 119.99921 * 179.97438 * 8 7 5 25 25 H 1.08000 * 119.86618 * 179.72544 * 17 13 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1857 1.1818 0.0000 4 6 3.5999 1.1785 -0.0005 5 6 4.3084 2.3863 -0.0011 6 1 5.2347 2.4688 -0.5502 7 6 3.7927 3.5387 0.7437 8 7 2.8190 3.3841 1.5832 9 14 4.5403 5.2305 0.4818 10 1 4.3858 5.6249 -0.9415 11 1 3.8457 6.2178 1.3467 12 1 5.9830 5.1938 0.8315 13 6 4.2934 -0.0546 -0.0005 14 7 5.7734 -0.0748 -0.0005 15 8 6.4163 -1.2177 -0.1227 16 8 6.4473 1.0501 0.1217 17 6 3.5933 -1.2234 -0.0005 18 6 2.2005 -1.2075 -0.0005 19 9 1.5171 -2.3728 -0.0005 20 1 -0.3633 -0.0001 -1.0277 21 1 -0.3633 -0.8900 0.5138 22 1 -0.3633 0.8900 0.5137 23 1 1.6457 2.1171 0.0005 24 1 2.4781 4.1467 2.0763 25 1 4.1205 -2.1660 -0.0050 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235762489.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:46 Heat of formation + Delta-G solvation = -41.304352 kcal Electronic energy + Delta-G solvation = -15090.301838 eV Core-core repulsion = 12179.126525 eV Total energy + Delta-G solvation = -2911.175313 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 225.059 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -49.71474 -40.40687 -38.34469 -36.28803 -34.55097 -33.84703 -32.10091 -28.96103 -27.70917 -25.40322 -23.68686 -22.08798 -20.00038 -19.03745 -18.52758 -17.53017 -16.84567 -16.61052 -16.37093 -16.04443 -15.97990 -14.78445 -14.42988 -14.22176 -14.02687 -13.59892 -13.34304 -13.10268 -12.65896 -12.52775 -12.23648 -11.97285 -11.51372 -11.45621 -11.25116 -11.09091 -10.08791 -9.73621 -9.40750 -7.04868 -1.12929 0.37663 0.75543 1.17059 1.31320 1.41457 1.49835 2.06348 2.15332 2.82789 3.43122 3.79491 3.96358 4.23500 4.39190 4.44896 4.63682 4.80346 4.86705 5.02670 5.17084 5.19181 5.40393 5.52631 5.68109 5.86004 5.94906 6.23008 6.73973 7.46560 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.023569 B = 0.012284 C = 0.008308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.738781 B = 2278.896075 C = 3369.290338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.100 4.100 3 C -0.078 4.078 4 C 0.034 3.966 5 C -0.268 4.268 6 H 0.117 0.883 7 C 0.022 3.978 8 N -0.698 5.698 9 Si 1.004 2.996 10 H -0.240 1.240 11 H -0.236 1.236 12 H -0.266 1.266 13 C -0.081 4.081 14 N 0.032 4.968 15 O -0.437 6.437 16 O -0.347 6.347 17 C -0.101 4.101 18 C 0.029 3.971 19 F -0.142 7.142 20 H 0.087 0.913 21 H 0.070 0.930 22 H 0.087 0.913 23 H 0.155 0.845 24 H 0.333 0.667 25 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.618 7.115 -0.367 12.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.101 4.101 3 C -0.097 4.097 4 C 0.029 3.971 5 C -0.297 4.297 6 H 0.135 0.865 7 C -0.211 4.211 8 N -0.319 5.319 9 Si 0.819 3.181 10 H -0.163 1.163 11 H -0.158 1.158 12 H -0.190 1.190 13 C -0.191 4.191 14 N 0.421 4.579 15 O -0.559 6.559 16 O -0.487 6.487 17 C -0.122 4.122 18 C 0.006 3.994 19 F -0.121 7.121 20 H 0.105 0.895 21 H 0.089 0.911 22 H 0.106 0.894 23 H 0.173 0.827 24 H 0.148 0.852 25 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -10.804 6.916 -0.191 12.830 hybrid contribution 1.181 -0.358 0.070 1.236 sum -9.623 6.559 -0.121 11.646 Atomic orbital electron populations 1.20740 0.87469 1.03944 1.03673 1.19883 0.98590 0.90590 1.01052 1.21046 0.90729 0.97888 1.00031 1.17670 0.93687 0.90322 0.95400 1.22853 1.03982 0.92513 1.10304 0.86541 1.28825 0.94244 1.05512 0.92496 1.68934 1.14673 1.38673 1.09599 0.84891 0.79520 0.71931 0.81739 1.16302 1.15827 1.19015 1.19825 0.75589 0.96389 1.27252 1.49618 1.04353 1.00731 1.03171 1.96004 1.72527 1.16256 1.71106 1.95941 1.70119 1.17672 1.64993 1.20029 0.93267 0.97365 1.01498 1.17147 0.87416 0.81737 1.13092 1.91379 1.79265 1.46630 1.94829 0.89470 0.91061 0.89393 0.82733 0.85185 0.85872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.65 9.82 71.24 0.70 -1.95 15 2 C -0.10 -3.64 5.85 -20.08 -0.12 -3.76 15 3 C -0.08 -3.05 8.28 22.60 0.19 -2.87 15 4 C 0.03 1.63 5.49 -21.27 -0.12 1.51 15 5 C -0.27 -12.20 7.80 24.88 0.19 -12.00 15 6 H 0.12 5.71 5.96 -2.91 -0.02 5.69 15 7 C 0.02 0.80 5.35 87.22 0.47 1.27 15 8 N -0.70 -24.57 11.57 23.22 0.27 -24.30 15 9 Si 1.00 27.36 29.66 68.60 2.03 29.40 15 10 H -0.24 -6.22 7.11 99.48 0.71 -5.52 15 11 H -0.24 -5.31 7.11 99.48 0.71 -4.61 15 12 H -0.27 -8.19 7.11 99.48 0.71 -7.48 15 13 C -0.08 -4.32 6.89 36.71 0.25 -4.07 15 14 N 0.03 1.97 4.98 -45.68 -0.23 1.74 15 15 O -0.44 -27.88 19.15 3.52 0.07 -27.81 15 16 O -0.35 -21.18 16.29 3.50 0.06 -21.12 15 17 C -0.10 -4.90 9.51 22.06 0.21 -4.69 15 18 C 0.03 1.21 7.29 22.77 0.17 1.38 15 19 F -0.14 -5.41 16.46 44.97 0.74 -4.67 15 20 H 0.09 1.94 8.14 -2.39 -0.02 1.92 15 21 H 0.07 1.77 7.63 -2.39 -0.02 1.75 15 22 H 0.09 1.96 8.08 -2.39 -0.02 1.94 15 23 H 0.16 5.37 6.88 -2.91 -0.02 5.35 15 24 H 0.33 9.45 8.27 -92.70 -0.77 8.68 15 25 H 0.12 6.03 7.56 -2.91 -0.02 6.00 15 Total: -1.00 -64.31 238.22 6.12 -58.19 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: 1.24 Total: 13.74 kcal Atomic # 6 Polarization: -27.11 SS G_CDS: 1.94 Total: -25.17 kcal Atomic # 7 Polarization: -22.60 SS G_CDS: 0.04 Total: -22.56 kcal Atomic # 8 Polarization: -49.06 SS G_CDS: 0.12 Total: -48.93 kcal Atomic # 9 Polarization: -5.41 SS G_CDS: 0.74 Total: -4.67 kcal Atomic # 14 Polarization: 27.36 SS G_CDS: 2.03 Total: 29.40 kcal Total: -64.31 6.12 -58.19 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235762489.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.890 kcal (2) G-P(sol) polarization free energy of solvation -64.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds