Wall clock time and date at job start Mon Mar 30 2020 02:58:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.41285 * 120.06859 * 2 1 4 4 C 1.40346 * 120.27761 * 359.95998 * 3 2 1 5 5 H 1.08003 * 119.99888 * 25.90024 * 4 3 2 6 6 C 1.46540 * 120.00167 * 205.89838 * 4 3 2 7 7 N 1.29498 * 119.99660 * 12.51317 * 6 4 3 8 8 Si 1.86795 * 119.99958 * 192.51290 * 6 4 3 9 9 H 1.48499 * 109.47367 * 60.00204 * 8 6 4 10 10 H 1.48506 * 109.47244 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47525 * 299.99854 * 8 6 4 12 12 C 1.41240 * 119.44697 * 179.97438 * 3 2 1 13 13 C 1.37715 * 119.54883 * 0.02562 * 12 3 2 14 14 F 1.35103 * 119.94100 * 180.02562 * 13 12 3 15 15 C 1.39031 * 120.12070 * 359.97438 * 13 12 3 16 16 C 1.36459 * 120.06938 * 179.97438 * 2 1 3 17 17 N 1.48020 * 119.77131 * 0.03639 * 16 2 1 18 18 O 1.31700 * 119.99704 * 172.51739 * 17 16 2 19 19 O 1.31693 * 120.00029 * 352.52564 * 17 16 2 20 20 H 1.08995 * 109.47055 * 259.96123 * 1 2 3 21 21 H 1.08997 * 109.47201 * 19.96851 * 1 2 3 22 22 H 1.09003 * 109.47165 * 139.96406 * 1 2 3 23 23 H 0.97010 * 120.00168 * 179.97438 * 7 6 4 24 24 H 1.07999 * 120.22308 * 179.97438 * 12 3 2 25 25 H 1.08001 * 119.71496 * 180.27147 * 15 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2149 1.2227 0.0000 4 6 1.5205 2.4424 -0.0008 5 1 0.5219 2.4955 0.4071 6 6 2.1504 3.6438 -0.5552 7 7 3.2338 3.5415 -1.2571 8 14 1.3905 5.3225 -0.2493 9 1 1.3412 5.5849 1.2115 10 1 2.2125 6.3663 -0.9127 11 1 0.0133 5.3511 -0.8041 12 6 3.6272 1.2074 0.0006 13 6 4.2933 0.0021 0.0005 14 9 5.6441 -0.0218 0.0016 15 6 3.5783 -1.1903 0.0005 16 6 2.1907 -1.1809 0.0005 17 7 1.4471 -2.4608 0.0003 18 8 2.0941 -3.5983 -0.1477 19 8 0.1384 -2.4620 0.1479 20 1 -0.3633 -0.1791 1.0119 21 1 -0.3633 0.9658 -0.3509 22 1 -0.3634 -0.7868 -0.6611 23 1 3.6507 4.3368 -1.6244 24 1 4.1809 2.1346 0.0001 25 1 4.1073 -2.1318 0.0050 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238444832.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:06 Heat of formation + Delta-G solvation = -27.521388 kcal Electronic energy + Delta-G solvation = -15018.295030 eV Core-core repulsion = 12107.717391 eV Total energy + Delta-G solvation = -2910.577639 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 225.059 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -49.82887 -40.88103 -38.98635 -35.85603 -35.63352 -33.26920 -32.49980 -28.88317 -27.44196 -26.37440 -23.25164 -22.33404 -20.27325 -19.20722 -18.56849 -17.39784 -17.23546 -16.92437 -16.52010 -16.41637 -16.17407 -14.76546 -14.66846 -14.35362 -13.60471 -13.36140 -13.28355 -13.05861 -12.65137 -12.55942 -12.31166 -12.13039 -12.00302 -11.80056 -11.35305 -11.28524 -10.14809 -9.65859 -9.03331 -6.69928 -1.56336 0.24384 0.39224 0.54329 1.40543 1.47195 1.55169 2.10038 2.27159 3.06451 3.39264 3.93325 4.11443 4.26080 4.26875 4.41945 4.76423 4.79288 4.89911 4.93920 5.15493 5.34998 5.42173 5.51043 5.72213 5.91208 6.16975 6.32463 6.44771 7.87093 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.029883 B = 0.009893 C = 0.007589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.755651 B = 2829.679820 C = 3688.571762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.129 4.129 3 C 0.093 3.907 4 C -0.430 4.430 5 H 0.118 0.882 6 C 0.035 3.965 7 N -0.767 5.767 8 Si 1.002 2.998 9 H -0.252 1.252 10 H -0.265 1.265 11 H -0.249 1.249 12 C -0.207 4.207 13 C 0.127 3.873 14 F -0.149 7.149 15 C -0.279 4.279 16 C 0.054 3.946 17 N -0.005 5.005 18 O -0.248 6.248 19 O -0.164 6.164 20 H 0.078 0.922 21 H 0.082 0.918 22 H 0.075 0.925 23 H 0.311 0.689 24 H 0.138 0.862 25 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.575 5.334 1.164 6.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.133 4.133 3 C 0.089 3.911 4 C -0.454 4.454 5 H 0.136 0.864 6 C -0.192 4.192 7 N -0.387 5.387 8 Si 0.820 3.180 9 H -0.176 1.176 10 H -0.189 1.189 11 H -0.173 1.173 12 C -0.227 4.227 13 C 0.107 3.893 14 F -0.127 7.127 15 C -0.300 4.300 16 C -0.033 4.033 17 N 0.465 4.535 18 O -0.425 6.425 19 O -0.363 6.363 20 H 0.097 0.903 21 H 0.101 0.899 22 H 0.093 0.907 23 H 0.125 0.875 24 H 0.156 0.844 25 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -1.922 5.872 0.984 6.256 hybrid contribution 0.367 -0.237 -0.112 0.451 sum -1.554 5.635 0.872 5.910 Atomic orbital electron populations 1.20990 0.88277 1.03540 1.02799 1.20157 0.98395 0.89817 1.04908 1.17328 0.90805 0.91681 0.91274 1.21392 1.02523 0.90769 1.30714 0.86446 1.28568 0.93983 1.05776 0.90866 1.69067 1.15627 1.36018 1.17983 0.84915 0.79614 0.72982 0.80497 1.17572 1.18946 1.17263 1.21650 0.95396 0.95814 1.09857 1.17163 0.75991 0.93698 1.02431 1.91395 1.29573 1.97476 1.94299 1.19862 0.91136 0.98163 1.20858 1.19478 0.90882 0.79422 1.13559 1.50734 1.02546 1.04820 0.95449 1.96188 1.69289 1.17921 1.59116 1.96096 0.91051 1.95727 1.53460 0.90335 0.89908 0.90688 0.87549 0.84410 0.85118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.73 8.10 71.24 0.58 -3.15 15 2 C -0.13 -5.73 5.92 -19.53 -0.12 -5.85 15 3 C 0.09 4.26 5.61 -21.28 -0.12 4.14 15 4 C -0.43 -17.98 8.42 24.95 0.21 -17.77 15 5 H 0.12 4.42 6.72 -2.91 -0.02 4.40 15 6 C 0.03 1.34 5.40 87.20 0.47 1.82 15 7 N -0.77 -31.71 10.89 23.21 0.25 -31.46 15 8 Si 1.00 28.38 29.66 68.60 2.03 30.41 15 9 H -0.25 -7.03 7.11 99.48 0.71 -6.32 15 10 H -0.27 -7.20 7.11 99.48 0.71 -6.50 15 11 H -0.25 -6.80 7.11 99.48 0.71 -6.09 15 12 C -0.21 -9.68 8.74 22.88 0.20 -9.48 15 13 C 0.13 5.88 7.29 22.34 0.16 6.05 15 14 F -0.15 -6.52 17.26 44.97 0.78 -5.74 15 15 C -0.28 -12.91 9.58 22.58 0.22 -12.69 15 16 C 0.05 2.48 6.81 36.08 0.25 2.73 15 17 N -0.01 -0.23 4.98 -47.16 -0.23 -0.47 15 18 O -0.25 -11.71 19.15 3.52 0.07 -11.64 15 19 O -0.16 -7.08 15.90 3.53 0.06 -7.03 15 20 H 0.08 2.72 8.06 -2.39 -0.02 2.70 15 21 H 0.08 2.84 6.27 -2.39 -0.01 2.83 15 22 H 0.07 2.81 6.00 -2.39 -0.01 2.80 15 23 H 0.31 11.27 8.27 -92.70 -0.77 10.50 15 24 H 0.14 6.50 6.11 -2.91 -0.02 6.48 15 25 H 0.13 5.85 7.58 -2.91 -0.02 5.82 15 Total: -1.00 -49.55 234.04 6.05 -43.50 By element: Atomic # 1 Polarization: 15.38 SS G_CDS: 1.25 Total: 16.63 kcal Atomic # 6 Polarization: -36.05 SS G_CDS: 1.85 Total: -34.21 kcal Atomic # 7 Polarization: -31.94 SS G_CDS: 0.02 Total: -31.92 kcal Atomic # 8 Polarization: -18.79 SS G_CDS: 0.12 Total: -18.67 kcal Atomic # 9 Polarization: -6.52 SS G_CDS: 0.78 Total: -5.74 kcal Atomic # 14 Polarization: 28.38 SS G_CDS: 2.03 Total: 30.41 kcal Total: -49.55 6.05 -43.50 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238444832.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.978 kcal (2) G-P(sol) polarization free energy of solvation -49.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds