Wall clock time and date at job start Mon Mar 30 2020 03:27:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38265 * 119.98778 * 2 1 4 4 C 1.38195 * 120.01144 * 180.02562 * 3 2 1 5 5 C 1.38373 * 119.98516 * 0.28295 * 4 3 2 6 6 Cl 1.73604 * 120.00832 * 179.69697 * 5 4 3 7 7 C 1.38328 * 119.97428 * 359.44453 * 5 4 3 8 8 C 1.50699 * 120.00778 * 180.25714 * 7 5 4 9 9 H 1.09001 * 109.47078 * 40.27138 * 8 7 5 10 10 N 1.46894 * 109.47418 * 160.27293 * 8 7 5 11 11 C 1.50697 * 109.47227 * 280.27428 * 8 7 5 12 12 H 1.08000 * 119.99902 * 359.97438 * 11 8 7 13 13 C 1.37878 * 120.00446 * 179.97438 * 11 8 7 14 14 N 1.31518 * 119.99469 * 0.02562 * 13 11 8 15 15 Si 1.86796 * 120.00340 * 179.97438 * 13 11 8 16 16 H 1.48506 * 109.47078 * 89.99998 * 15 13 11 17 17 H 1.48498 * 109.47314 * 210.00031 * 15 13 11 18 18 H 1.48494 * 109.47118 * 330.00367 * 15 13 11 19 19 C 1.38216 * 119.98555 * 179.97438 * 2 1 3 20 20 H 1.08991 * 109.47439 * 89.99130 * 1 2 3 21 21 H 1.08999 * 109.47031 * 209.99689 * 1 2 3 22 22 H 1.09004 * 109.46318 * 329.99319 * 1 2 3 23 23 H 1.08000 * 119.99339 * 359.97438 * 3 2 1 24 24 H 1.08002 * 120.00237 * 180.02562 * 4 3 2 25 25 H 1.00897 * 110.99978 * 60.00012 * 10 8 7 26 26 H 1.00898 * 111.00495 * 183.95666 * 10 8 7 27 27 H 0.97001 * 119.99557 * 180.02562 * 14 13 11 28 28 H 1.08001 * 119.99346 * 359.97438 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1981 1.1976 0.0000 4 6 3.5801 1.1981 -0.0005 5 6 4.2721 -0.0001 -0.0070 6 17 6.0081 -0.0001 -0.0156 7 6 3.5802 -1.1979 -0.0013 8 6 4.3331 -2.5033 -0.0025 9 1 5.1971 -2.4249 0.6575 10 7 3.4509 -3.5779 0.4714 11 6 4.7968 -2.8145 -1.4021 12 1 4.5687 -2.1352 -2.2101 13 6 5.5123 -3.9665 -1.6513 14 7 5.7897 -4.7939 -0.6674 15 14 6.0864 -4.3526 -3.3864 16 1 7.4329 -3.7654 -3.6045 17 1 6.1527 -5.8247 -3.5698 18 1 5.1301 -3.7745 -4.3643 19 6 2.1978 -1.1972 0.0005 20 1 -0.3634 0.0002 -1.0276 21 1 -0.3633 -0.8900 0.5138 22 1 -0.3632 0.8900 0.5140 23 1 1.6578 2.1327 -0.0004 24 1 4.1197 2.1336 -0.0001 25 1 2.6418 -3.6706 -0.1243 26 1 3.9506 -4.4517 0.5412 27 1 6.2933 -5.6042 -0.8426 28 1 1.6575 -2.1323 0.0014 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238481415.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:57 Heat of formation + Delta-G solvation = 3.143394 kcal Electronic energy + Delta-G solvation = -13247.105565 eV Core-core repulsion = 10902.027120 eV Total energy + Delta-G solvation = -2345.078445 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.062 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.96008 -35.67142 -34.84342 -32.05004 -31.53158 -29.21684 -26.63724 -25.75524 -23.14923 -21.14332 -19.57916 -16.51420 -16.39427 -15.27456 -14.78663 -14.11310 -13.87753 -13.52750 -12.92153 -12.82868 -12.40715 -12.17126 -11.86789 -11.50330 -11.17679 -10.94445 -10.69869 -10.53478 -10.51110 -10.18643 -10.01360 -9.45882 -8.65674 -8.14586 -7.80363 -7.21993 -6.07441 -4.21853 1.78947 1.99028 2.99777 3.24472 3.31375 3.35191 4.23083 4.40162 5.15483 5.22151 5.34204 5.47758 5.65311 5.82950 5.85855 6.08357 6.18187 6.42916 6.57231 6.58266 6.82278 7.02115 7.12252 7.47368 7.69840 7.76672 8.08100 8.66798 8.92058 9.08960 9.48215 10.91466 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.027789 B = 0.010184 C = 0.008714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.357458 B = 2748.658885 C = 3212.308517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.094 4.094 3 C -0.139 4.139 4 C -0.116 4.116 5 C -0.041 4.041 6 Cl -0.071 7.071 7 C -0.018 4.018 8 C 0.238 3.762 9 H 0.059 0.941 10 N -0.851 5.851 11 C -0.532 4.532 12 H 0.054 0.946 13 C 0.068 3.932 14 N -0.894 5.894 15 Si 0.895 3.105 16 H -0.279 1.279 17 H -0.286 1.286 18 H -0.274 1.274 19 C -0.102 4.102 20 H 0.065 0.935 21 H 0.065 0.935 22 H 0.060 0.940 23 H 0.118 0.882 24 H 0.121 0.879 25 H 0.310 0.690 26 H 0.357 0.643 27 H 0.265 0.735 28 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.369 8.273 1.016 10.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.094 4.094 3 C -0.157 4.157 4 C -0.135 4.135 5 C -0.068 4.068 6 Cl -0.042 7.042 7 C -0.020 4.020 8 C 0.129 3.871 9 H 0.077 0.923 10 N -0.382 5.382 11 C -0.572 4.572 12 H 0.073 0.927 13 C -0.134 4.134 14 N -0.533 5.533 15 Si 0.723 3.277 16 H -0.205 1.205 17 H -0.212 1.212 18 H -0.199 1.199 19 C -0.121 4.121 20 H 0.084 0.916 21 H 0.084 0.916 22 H 0.079 0.921 23 H 0.136 0.864 24 H 0.139 0.861 25 H 0.120 0.880 26 H 0.174 0.826 27 H 0.075 0.925 28 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -6.177 8.523 1.738 10.669 hybrid contribution 0.864 -0.641 -1.978 2.251 sum -5.314 7.881 -0.240 9.508 Atomic orbital electron populations 1.20726 0.91679 1.02265 1.01846 1.19932 0.95765 0.93371 1.00329 1.20687 0.93201 0.97263 1.04558 1.20864 0.94197 0.96324 1.02082 1.20755 0.84650 0.94484 1.06906 1.98332 1.10199 1.98842 1.96836 1.20441 0.93621 0.95792 0.92117 1.18043 0.90408 0.83723 0.94974 0.92291 1.59578 1.11374 1.12353 1.54867 1.21651 1.35212 1.06257 0.94033 0.92731 1.24960 0.95094 0.96150 0.97237 1.69739 1.40162 1.12386 1.31055 0.86540 0.79301 0.77297 0.84589 1.20510 1.21189 1.19915 1.20863 0.93333 0.97350 1.00546 0.91615 0.91620 0.92116 0.86446 0.86100 0.87988 0.82615 0.92515 0.85208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.34 10.01 36.01 0.36 -0.98 15 2 C -0.09 -1.53 5.88 -104.62 -0.62 -2.15 15 3 C -0.14 -2.17 9.70 -39.59 -0.38 -2.56 15 4 C -0.12 -1.99 9.83 -39.55 -0.39 -2.38 15 5 C -0.04 -0.84 6.30 -39.50 -0.25 -1.09 15 6 Cl -0.07 -1.45 27.32 -51.86 -1.42 -2.87 15 7 C -0.02 -0.40 5.03 -104.59 -0.53 -0.93 15 8 C 0.24 5.93 2.40 -70.02 -0.17 5.76 15 9 H 0.06 1.63 7.37 -51.93 -0.38 1.25 15 10 N -0.85 -20.07 8.66 -6.66 -0.06 -20.13 15 11 C -0.53 -14.23 8.46 -34.44 -0.29 -14.52 15 12 H 0.05 1.50 7.74 -52.49 -0.41 1.10 15 13 C 0.07 1.82 5.38 -17.82 -0.10 1.73 15 14 N -0.89 -24.59 11.54 55.43 0.64 -23.95 15 15 Si 0.90 21.17 29.54 -169.99 -5.02 16.15 15 16 H -0.28 -6.64 7.11 56.52 0.40 -6.24 15 17 H -0.29 -6.68 7.11 56.52 0.40 -6.28 15 18 H -0.27 -6.47 7.11 56.52 0.40 -6.07 15 19 C -0.10 -1.98 8.91 -39.59 -0.35 -2.33 15 20 H 0.07 0.75 8.14 -51.93 -0.42 0.33 15 21 H 0.06 0.77 8.08 -51.93 -0.42 0.35 15 22 H 0.06 0.64 8.09 -51.93 -0.42 0.22 15 23 H 0.12 1.47 8.06 -52.49 -0.42 1.05 15 24 H 0.12 1.78 8.06 -52.49 -0.42 1.36 15 25 H 0.31 6.87 7.28 -39.29 -0.29 6.59 15 26 H 0.36 9.03 7.08 -39.29 -0.28 8.75 15 27 H 0.26 6.99 8.31 -40.82 -0.34 6.65 15 28 H 0.13 2.42 6.25 -52.49 -0.33 2.09 15 LS Contribution 254.74 15.07 3.84 3.84 Total: -1.00 -27.61 254.74 -7.65 -35.26 By element: Atomic # 1 Polarization: 14.07 SS G_CDS: -2.92 Total: 11.15 kcal Atomic # 6 Polarization: -16.73 SS G_CDS: -2.71 Total: -19.44 kcal Atomic # 7 Polarization: -44.66 SS G_CDS: 0.58 Total: -44.08 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Atomic # 17 Polarization: -1.45 SS G_CDS: -1.42 Total: -2.87 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -27.61 -7.65 -35.26 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238481415.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.402 kcal (2) G-P(sol) polarization free energy of solvation -27.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.259 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds