Wall clock time and date at job start Mon Mar 30 2020 03:27:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38265 * 119.98778 * 2 1 4 4 C 1.38195 * 120.01144 * 180.02562 * 3 2 1 5 5 C 1.38373 * 119.98516 * 0.28295 * 4 3 2 6 6 Cl 1.73604 * 120.00832 * 179.69697 * 5 4 3 7 7 C 1.38328 * 119.97428 * 359.44453 * 5 4 3 8 8 C 1.50699 * 120.00778 * 180.25714 * 7 5 4 9 9 H 1.09001 * 109.47078 * 40.27138 * 8 7 5 10 10 N 1.46894 * 109.47418 * 160.27293 * 8 7 5 11 11 C 1.50697 * 109.47227 * 280.27428 * 8 7 5 12 12 H 1.08000 * 119.99902 * 359.97438 * 11 8 7 13 13 C 1.37878 * 120.00446 * 179.97438 * 11 8 7 14 14 N 1.31518 * 119.99469 * 0.02562 * 13 11 8 15 15 Si 1.86796 * 120.00340 * 179.97438 * 13 11 8 16 16 H 1.48506 * 109.47078 * 89.99998 * 15 13 11 17 17 H 1.48498 * 109.47314 * 210.00031 * 15 13 11 18 18 H 1.48494 * 109.47118 * 330.00367 * 15 13 11 19 19 C 1.38216 * 119.98555 * 179.97438 * 2 1 3 20 20 H 1.08991 * 109.47439 * 89.99130 * 1 2 3 21 21 H 1.08999 * 109.47031 * 209.99689 * 1 2 3 22 22 H 1.09004 * 109.46318 * 329.99319 * 1 2 3 23 23 H 1.08000 * 119.99339 * 359.97438 * 3 2 1 24 24 H 1.08002 * 120.00237 * 180.02562 * 4 3 2 25 25 H 1.00897 * 110.99978 * 60.00012 * 10 8 7 26 26 H 1.00898 * 111.00495 * 183.95666 * 10 8 7 27 27 H 0.97001 * 119.99557 * 180.02562 * 14 13 11 28 28 H 1.08001 * 119.99346 * 359.97438 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1981 1.1976 0.0000 4 6 3.5801 1.1981 -0.0005 5 6 4.2721 -0.0001 -0.0070 6 17 6.0081 -0.0001 -0.0156 7 6 3.5802 -1.1979 -0.0013 8 6 4.3331 -2.5033 -0.0025 9 1 5.1971 -2.4249 0.6575 10 7 3.4509 -3.5779 0.4714 11 6 4.7968 -2.8145 -1.4021 12 1 4.5687 -2.1352 -2.2101 13 6 5.5123 -3.9665 -1.6513 14 7 5.7897 -4.7939 -0.6674 15 14 6.0864 -4.3526 -3.3864 16 1 7.4329 -3.7654 -3.6045 17 1 6.1527 -5.8247 -3.5698 18 1 5.1301 -3.7745 -4.3643 19 6 2.1978 -1.1972 0.0005 20 1 -0.3634 0.0002 -1.0276 21 1 -0.3633 -0.8900 0.5138 22 1 -0.3632 0.8900 0.5140 23 1 1.6578 2.1327 -0.0004 24 1 4.1197 2.1336 -0.0001 25 1 2.6418 -3.6706 -0.1243 26 1 3.9506 -4.4517 0.5412 27 1 6.2933 -5.6042 -0.8426 28 1 1.6575 -2.1323 0.0014 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238481415.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:57 Heat of formation + Delta-G solvation = -13.478442 kcal Electronic energy + Delta-G solvation = -13247.826342 eV Core-core repulsion = 10902.027120 eV Total energy + Delta-G solvation = -2345.799222 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.062 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.39536 -37.19190 -36.67324 -33.72278 -33.07370 -30.83323 -28.24855 -27.31575 -24.86704 -22.57189 -21.16891 -18.57747 -17.88419 -16.82792 -16.56877 -15.75063 -15.37550 -14.95880 -14.50649 -14.25058 -13.94641 -13.65363 -13.22280 -13.04030 -12.97442 -12.74836 -12.46247 -12.10696 -12.01329 -11.83404 -11.76386 -11.17100 -10.69060 -9.61903 -9.32247 -9.11594 -8.10487 -6.33231 0.38602 0.57200 1.35407 1.37854 1.46691 1.48698 2.36751 2.87305 3.07955 4.02477 4.07412 4.11664 4.39838 4.52822 4.79251 4.88277 4.91823 4.94327 5.12457 5.27747 5.35772 5.44042 5.64924 5.75681 5.86671 6.04012 6.14644 6.66205 6.91663 7.11154 7.40454 8.85014 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.027789 B = 0.010184 C = 0.008714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.357458 B = 2748.658885 C = 3212.308517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.088 4.088 3 C -0.127 4.127 4 C -0.114 4.114 5 C -0.065 4.065 6 Cl -0.086 7.086 7 C -0.054 4.054 8 C 0.245 3.755 9 H 0.021 0.979 10 N -0.843 5.843 11 C -0.539 4.539 12 H 0.041 0.959 13 C 0.025 3.975 14 N -0.916 5.916 15 Si 0.951 3.049 16 H -0.280 1.280 17 H -0.279 1.279 18 H -0.272 1.272 19 C -0.117 4.117 20 H 0.079 0.921 21 H 0.068 0.932 22 H 0.087 0.913 23 H 0.162 0.838 24 H 0.147 0.853 25 H 0.318 0.682 26 H 0.346 0.654 27 H 0.266 0.734 28 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.155 9.918 0.416 12.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.088 4.088 3 C -0.144 4.144 4 C -0.132 4.132 5 C -0.092 4.092 6 Cl -0.057 7.057 7 C -0.056 4.056 8 C 0.135 3.865 9 H 0.038 0.962 10 N -0.372 5.372 11 C -0.578 4.578 12 H 0.059 0.941 13 C -0.175 4.175 14 N -0.556 5.556 15 Si 0.777 3.223 16 H -0.206 1.206 17 H -0.204 1.204 18 H -0.197 1.197 19 C -0.136 4.136 20 H 0.098 0.902 21 H 0.087 0.913 22 H 0.106 0.894 23 H 0.179 0.821 24 H 0.165 0.835 25 H 0.129 0.871 26 H 0.161 0.839 27 H 0.076 0.924 28 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -7.979 10.178 1.139 12.983 hybrid contribution 1.339 -1.077 -1.756 2.457 sum -6.639 9.101 -0.617 11.283 Atomic orbital electron populations 1.20810 0.88457 1.03852 1.03178 1.20384 0.98047 0.92363 0.97984 1.21219 0.92599 0.98795 1.01837 1.21223 0.95184 0.96005 1.00793 1.20995 0.84133 0.95396 1.08628 1.98315 1.11521 1.98883 1.97019 1.20299 0.94874 0.94846 0.95545 1.17754 0.89938 0.85729 0.93061 0.96152 1.59534 1.11239 1.11499 1.54927 1.21786 1.35338 1.06018 0.94698 0.94115 1.25627 0.95280 0.96131 1.00453 1.69834 1.40589 1.12647 1.32516 0.85660 0.78569 0.77301 0.80728 1.20616 1.20415 1.19687 1.20967 0.92362 0.98874 1.01391 0.90221 0.91253 0.89434 0.82072 0.83533 0.87114 0.83907 0.92431 0.85416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.18 10.01 71.24 0.71 -1.47 15 2 C -0.09 -2.58 5.88 -19.86 -0.12 -2.70 15 3 C -0.13 -3.44 9.70 22.27 0.22 -3.23 15 4 C -0.11 -3.62 9.83 22.29 0.22 -3.40 15 5 C -0.06 -2.63 6.30 22.32 0.14 -2.49 15 6 Cl -0.09 -3.59 27.32 -2.72 -0.07 -3.67 15 7 C -0.05 -2.41 5.03 -19.84 -0.10 -2.51 15 8 C 0.25 12.60 2.40 43.42 0.10 12.70 15 9 H 0.02 1.20 7.37 -2.39 -0.02 1.18 15 10 N -0.84 -40.80 8.66 -174.97 -1.52 -42.31 15 11 C -0.54 -29.49 8.46 25.60 0.22 -29.27 15 12 H 0.04 2.29 7.74 -2.91 -0.02 2.27 15 13 C 0.03 1.36 5.38 84.65 0.46 1.82 15 14 N -0.92 -51.37 11.54 21.45 0.25 -51.12 15 15 Si 0.95 43.78 29.54 68.60 2.03 45.80 15 16 H -0.28 -12.87 7.11 99.48 0.71 -12.16 15 17 H -0.28 -12.42 7.11 99.48 0.71 -11.71 15 18 H -0.27 -12.32 7.11 99.48 0.71 -11.62 15 19 C -0.12 -4.43 8.91 22.26 0.20 -4.23 15 20 H 0.08 1.47 8.14 -2.39 -0.02 1.45 15 21 H 0.07 1.39 8.08 -2.39 -0.02 1.37 15 22 H 0.09 1.36 8.09 -2.38 -0.02 1.34 15 23 H 0.16 3.02 8.06 -2.91 -0.02 2.99 15 24 H 0.15 3.84 8.06 -2.91 -0.02 3.82 15 25 H 0.32 14.36 7.28 -89.70 -0.65 13.71 15 26 H 0.35 18.04 7.08 -89.70 -0.63 17.40 15 27 H 0.27 14.24 8.31 -92.71 -0.77 13.47 15 28 H 0.13 4.71 6.25 -2.91 -0.02 4.69 15 Total: -1.00 -60.50 254.74 2.63 -57.87 By element: Atomic # 1 Polarization: 28.32 SS G_CDS: -0.10 Total: 28.22 kcal Atomic # 6 Polarization: -36.83 SS G_CDS: 2.05 Total: -34.78 kcal Atomic # 7 Polarization: -92.16 SS G_CDS: -1.27 Total: -93.43 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.80 kcal Atomic # 17 Polarization: -3.59 SS G_CDS: -0.07 Total: -3.67 kcal Total: -60.50 2.63 -57.87 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238481415.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.387 kcal (2) G-P(sol) polarization free energy of solvation -60.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds