Wall clock time and date at job start Mon Mar 30 2020 02:45:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.30681 * 121.78811 * 2 1 4 4 S 1.75733 * 110.08499 * 180.02562 * 3 2 1 5 5 C 1.76254 * 90.77636 * 0.02562 * 4 3 2 6 6 N 1.31824 * 141.65861 * 179.97438 * 5 4 3 7 7 N 1.39980 * 107.68908 * 180.02562 * 6 5 4 8 8 C 1.37061 * 126.31255 * 180.26399 * 7 6 5 9 9 H 1.07999 * 119.99667 * 179.68905 * 8 7 6 10 10 C 1.38488 * 120.00126 * 359.69503 * 8 7 6 11 11 N 1.31654 * 120.00326 * 359.97438 * 10 8 7 12 12 Si 1.86806 * 120.00058 * 180.02562 * 10 8 7 13 13 H 1.48501 * 109.46758 * 359.97438 * 12 10 8 14 14 H 1.48497 * 109.47158 * 119.99668 * 12 10 8 15 15 H 1.48504 * 109.46693 * 239.99953 * 12 10 8 16 16 C 1.34525 * 107.37013 * 0.02562 * 7 6 5 17 17 O 1.21720 * 126.00463 * 179.97438 * 16 7 6 18 18 N 1.36223 * 107.98613 * 359.97438 * 16 7 6 19 19 H 1.08997 * 109.46952 * 269.95283 * 1 2 3 20 20 H 1.09003 * 109.46796 * 29.94950 * 1 2 3 21 21 H 1.09001 * 109.47340 * 149.94799 * 1 2 3 22 22 H 1.07997 * 124.95475 * 0.04994 * 3 2 1 23 23 H 0.96994 * 120.00499 * 180.02562 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1954 1.1108 0.0000 4 16 3.9162 0.7543 -0.0007 5 6 3.5821 -0.9762 -0.0018 6 7 4.1891 -2.1464 -0.0031 7 7 3.2011 -3.1380 -0.0038 8 6 3.4105 -4.4925 -0.0001 9 1 2.5687 -5.1691 0.0041 10 6 4.7016 -4.9936 -0.0015 11 7 5.7278 -4.1689 -0.0070 12 14 4.9871 -6.8397 0.0028 13 1 3.6790 -7.5428 0.0082 14 1 5.7518 -7.2252 -1.2103 15 1 5.7572 -7.2186 1.2147 16 6 2.0081 -2.5163 -0.0033 17 8 0.9185 -3.0589 -0.0041 18 7 2.2339 -1.1729 -0.0019 19 1 -0.3633 -0.0008 1.0276 20 1 -0.3633 0.8905 -0.5131 21 1 -0.3634 -0.8895 -0.5146 22 1 1.7690 2.1030 0.0008 23 1 6.6321 -4.5198 -0.0084 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238556141.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:25 Heat of formation + Delta-G solvation = 63.592253 kcal Electronic energy + Delta-G solvation = -13250.452095 eV Core-core repulsion = 10806.498272 eV Total energy + Delta-G solvation = -2443.953823 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 225.031 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -43.61540 -38.87427 -37.84569 -35.34329 -32.87985 -31.04050 -29.47329 -27.49107 -24.20350 -23.87534 -20.95784 -19.84904 -18.97409 -17.88812 -17.56717 -16.75048 -16.41561 -15.89852 -14.95704 -14.80325 -14.09628 -13.83780 -13.76299 -13.56156 -13.31182 -12.99041 -12.58019 -12.37350 -12.08241 -12.05150 -11.31664 -11.06478 -10.86018 -10.30938 -8.52993 -8.38086 -6.34121 -0.05688 0.38666 0.87942 1.01591 1.02048 1.40788 1.41786 1.57995 1.88744 2.21923 2.94986 2.98214 3.42864 4.00912 4.31904 4.53996 4.62329 4.73353 4.89566 5.12378 5.31490 5.55426 5.84246 6.24456 6.71417 7.06169 7.49103 8.50019 Molecular weight = 225.03amu Principal moments of inertia in cm(-1) A = 0.044543 B = 0.009708 C = 0.008005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.448751 B = 2883.567031 C = 3496.866752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.083 3.917 3 C -0.218 4.218 4 S 0.208 5.792 5 C 0.076 3.924 6 N -0.216 5.216 7 N -0.247 5.247 8 C -0.351 4.351 9 H 0.116 0.884 10 C 0.002 3.998 11 N -0.837 5.837 12 Si 1.021 2.979 13 H -0.259 1.259 14 H -0.262 1.262 15 H -0.262 1.262 16 C 0.551 3.449 17 O -0.621 6.621 18 N -0.489 5.489 19 H 0.088 0.912 20 H 0.133 0.867 21 H 0.046 0.954 22 H 0.249 0.751 23 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.072 11.161 0.018 11.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.023 4.023 3 C -0.355 4.355 4 S 0.448 5.552 5 C -0.301 4.301 6 N -0.049 5.049 7 N -0.051 5.051 8 C -0.479 4.479 9 H 0.134 0.866 10 C -0.207 4.207 11 N -0.468 5.468 12 Si 0.839 3.161 13 H -0.183 1.183 14 H -0.187 1.187 15 H -0.187 1.187 16 C 0.253 3.747 17 O -0.505 6.505 18 N -0.209 5.209 19 H 0.107 0.893 20 H 0.151 0.849 21 H 0.065 0.935 22 H 0.265 0.735 23 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -1.522 10.904 0.013 11.010 hybrid contribution -1.540 -1.575 0.016 2.203 sum -3.063 9.329 0.029 9.819 Atomic orbital electron populations 1.20750 0.84972 1.04777 1.04403 1.19712 0.97456 0.81778 1.03395 1.25168 0.94909 1.02437 1.12947 1.84039 1.04331 0.82043 1.84761 1.28113 0.84632 1.04387 1.12989 1.78608 1.11993 0.90752 1.23597 1.44832 1.01146 1.05788 1.53346 1.19994 0.95856 0.75872 1.56141 0.86649 1.26618 0.93497 1.06594 0.93958 1.70387 0.99472 1.37115 1.39825 0.84526 0.79253 0.73272 0.79023 1.18268 1.18651 1.18656 1.16692 0.86063 0.80468 0.91460 1.90763 1.24985 1.69026 1.65773 1.44258 1.07389 1.06867 1.62368 0.89350 0.84896 0.93472 0.73539 0.90944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.38 10.09 71.24 0.72 -1.66 14 2 C 0.08 2.78 6.75 41.88 0.28 3.06 14 3 C -0.22 -5.23 10.76 68.11 0.73 -4.49 14 4 S 0.21 6.32 23.36 -56.49 -1.32 5.00 14 5 C 0.08 3.59 8.97 179.48 1.61 5.20 14 6 N -0.22 -12.41 10.48 -56.70 -0.59 -13.00 14 7 N -0.25 -15.09 3.68 -320.20 -1.18 -16.27 14 8 C -0.35 -21.16 10.09 83.94 0.85 -20.31 14 9 H 0.12 6.87 7.80 -2.91 -0.02 6.85 14 10 C 0.00 0.12 5.49 84.78 0.47 0.59 14 11 N -0.84 -47.82 11.83 21.59 0.26 -47.57 14 12 Si 1.02 41.67 29.55 68.60 2.03 43.70 14 13 H -0.26 -10.29 7.11 99.48 0.71 -9.58 14 14 H -0.26 -10.10 7.11 99.48 0.71 -9.40 14 15 H -0.26 -10.10 7.11 99.48 0.71 -9.40 14 16 C 0.55 31.92 8.80 178.67 1.57 33.50 14 17 O -0.62 -38.01 17.16 -4.41 -0.08 -38.08 14 18 N -0.49 -23.12 3.10 -472.52 -1.46 -24.59 14 19 H 0.09 2.14 8.14 -2.39 -0.02 2.12 14 20 H 0.13 2.08 8.10 -2.39 -0.02 2.06 14 21 H 0.05 1.60 7.52 -2.39 -0.02 1.58 14 22 H 0.25 2.80 8.06 -2.91 -0.02 2.77 14 23 H 0.28 14.50 8.31 -92.71 -0.77 13.73 14 Total: -1.00 -79.33 229.37 5.13 -74.20 By element: Atomic # 1 Polarization: -0.51 SS G_CDS: 1.25 Total: 0.73 kcal Atomic # 6 Polarization: 9.65 SS G_CDS: 6.23 Total: 15.87 kcal Atomic # 7 Polarization: -98.44 SS G_CDS: -2.98 Total: -101.42 kcal Atomic # 8 Polarization: -38.01 SS G_CDS: -0.08 Total: -38.08 kcal Atomic # 14 Polarization: 41.67 SS G_CDS: 2.03 Total: 43.70 kcal Atomic # 16 Polarization: 6.32 SS G_CDS: -1.32 Total: 5.00 kcal Total: -79.33 5.13 -74.20 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238556141.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.792 kcal (2) G-P(sol) polarization free energy of solvation -79.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.200 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds