Wall clock time and date at job start Mon Mar 30 2020 03:12:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 N 1.46491 * 109.46957 * 179.72213 * 9 7 2 11 11 N 1.39646 * 126.06490 * 90.02423 * 10 9 7 12 12 C 1.32310 * 108.49469 * 179.97438 * 11 10 9 13 13 C 1.38541 * 108.19032 * 359.97438 * 12 11 10 14 14 C 1.34829 * 126.05828 * 269.71363 * 10 9 7 15 15 N 1.39200 * 126.17248 * 0.02562 * 14 10 9 16 16 C 1.52168 * 115.58366 * 179.97438 * 13 12 11 17 17 S 1.83275 * 103.47061 * 17.44812 * 16 13 12 18 18 C 1.52201 * 136.25738 * 179.97438 * 12 11 10 19 19 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 20 20 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 21 21 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 22 22 H 0.97003 * 120.00065 * 0.02562 * 15 14 10 23 23 H 0.97004 * 119.99972 * 180.02562 * 15 14 10 24 24 H 1.09004 * 110.61595 * 135.94133 * 16 13 12 25 25 H 1.08997 * 110.62631 * 258.95139 * 16 13 12 26 26 H 1.09007 * 110.62341 * 281.07097 * 18 12 11 27 27 H 1.08999 * 110.62295 * 44.07901 * 18 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 7 2.2028 -3.6127 -0.0102 11 7 2.7366 -4.2429 1.1159 12 6 3.5560 -5.2001 0.7122 13 6 3.5656 -5.2056 -0.6731 14 6 2.7145 -4.2146 -1.1028 15 7 2.4339 -3.8897 -2.4270 16 6 4.4622 -6.2512 -1.3199 17 16 4.7742 -7.4438 0.0362 18 6 4.4434 -6.2414 1.3790 19 1 -0.4850 0.8401 -0.0004 20 1 0.6242 -2.5609 0.8844 21 1 0.6244 -2.5529 -0.8956 22 1 1.8177 -3.1684 -2.6294 23 1 2.8546 -4.3847 -3.1474 24 1 3.9479 -6.7381 -2.1486 25 1 5.3956 -5.8008 -1.6574 26 1 5.3724 -5.7888 1.7260 27 1 3.9178 -6.7222 2.2041 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238583751.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:16 Heat of formation + Delta-G solvation = 55.783394 kcal Electronic energy + Delta-G solvation = -13153.746427 eV Core-core repulsion = 10845.287081 eV Total energy + Delta-G solvation = -2308.459346 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.063 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.16936 -36.32185 -35.32796 -34.47639 -31.38030 -30.48438 -28.13617 -26.85115 -24.28465 -21.13194 -21.00807 -18.86150 -17.97040 -17.46654 -16.94141 -16.60945 -16.35925 -15.55777 -14.97959 -14.52057 -14.25262 -14.02955 -13.72746 -13.52962 -13.04466 -12.86764 -12.72085 -12.33772 -11.88894 -11.84353 -11.47934 -11.17402 -10.76778 -9.62047 -8.68088 -8.53755 -8.37615 -6.54758 0.90225 1.13409 1.21612 1.35690 1.38246 1.48615 1.66653 1.83042 2.31526 2.88732 2.94210 3.41015 4.01870 4.31633 4.43168 4.46391 4.54365 4.68994 4.71740 4.83741 5.08256 5.47974 5.66875 5.76181 5.81312 6.44591 6.60955 6.72065 7.17149 7.18366 8.69145 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.049712 B = 0.006838 C = 0.006632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 563.103879 B = 4093.832541 C = 4220.997319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.025 3.975 3 Si 0.972 3.028 4 H -0.264 1.264 5 H -0.275 1.275 6 H -0.277 1.277 7 C -0.554 4.554 8 H 0.048 0.952 9 C 0.277 3.723 10 N -0.368 5.368 11 N -0.337 5.337 12 C 0.052 3.948 13 C -0.364 4.364 14 C 0.387 3.613 15 N -0.835 5.835 16 C 0.042 3.958 17 S -0.264 6.264 18 C 0.023 3.977 19 H 0.274 0.726 20 H 0.023 0.977 21 H 0.049 0.951 22 H 0.406 0.594 23 H 0.425 0.575 24 H 0.111 0.889 25 H 0.100 0.900 26 H 0.121 0.879 27 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.396 -9.285 -5.076 12.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.177 4.177 3 Si 0.796 3.204 4 H -0.189 1.189 5 H -0.200 1.200 6 H -0.202 1.202 7 C -0.592 4.592 8 H 0.067 0.933 9 C 0.158 3.842 10 N -0.154 5.154 11 N -0.162 5.162 12 C -0.113 4.113 13 C -0.382 4.382 14 C 0.153 3.847 15 N -0.387 5.387 16 C -0.107 4.107 17 S -0.038 6.038 18 C -0.127 4.127 19 H 0.083 0.917 20 H 0.042 0.958 21 H 0.067 0.933 22 H 0.236 0.764 23 H 0.259 0.741 24 H 0.129 0.871 25 H 0.118 0.882 26 H 0.139 0.861 27 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 6.953 -9.683 -3.975 12.567 hybrid contribution -0.194 2.048 -0.806 2.210 sum 6.760 -7.635 -4.781 11.263 Atomic orbital electron populations 1.70000 1.07274 1.28934 1.49242 1.25720 0.95776 1.02624 0.93559 0.85344 0.78147 0.78016 0.78904 1.18860 1.20041 1.20194 1.21410 0.93063 0.90936 1.53783 0.93332 1.19171 0.86099 0.80880 0.98083 1.48752 1.36993 1.27954 1.01726 1.77511 1.18002 1.12707 1.07974 1.23049 0.97489 0.96555 0.94238 1.19851 1.14774 1.09693 0.93898 1.17794 0.92491 0.91318 0.83064 1.41488 1.54074 1.42339 1.00770 1.21879 0.99922 0.92386 0.96508 1.87382 1.92006 1.21039 1.03393 1.22212 1.00103 0.92470 0.97890 0.91686 0.95840 0.93347 0.76423 0.74114 0.87108 0.88182 0.86081 0.86135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.72 13.29 21.45 0.28 -50.44 15 2 C 0.02 1.31 5.46 84.66 0.46 1.78 15 3 Si 0.97 42.25 29.54 68.60 2.03 44.27 15 4 H -0.26 -10.83 7.11 99.48 0.71 -10.12 15 5 H -0.28 -11.59 7.11 99.48 0.71 -10.88 15 6 H -0.28 -12.19 7.11 99.48 0.71 -11.49 15 7 C -0.55 -30.35 9.39 25.60 0.24 -30.11 15 8 H 0.05 2.76 7.81 -2.91 -0.02 2.74 15 9 C 0.28 14.28 6.00 85.64 0.51 14.80 15 10 N -0.37 -17.29 3.58 -348.13 -1.25 -18.53 15 11 N -0.34 -15.82 12.61 -46.28 -0.58 -16.40 15 12 C 0.05 1.99 7.70 43.04 0.33 2.32 15 13 C -0.36 -12.82 6.53 -19.49 -0.13 -12.94 15 14 C 0.39 15.01 8.01 131.87 1.06 16.07 15 15 N -0.84 -24.82 9.10 -54.94 -0.50 -25.32 15 16 C 0.04 1.08 7.39 71.71 0.53 1.61 15 17 S -0.26 -6.95 23.42 -56.49 -1.32 -8.27 15 18 C 0.02 0.65 7.39 71.72 0.53 1.18 15 19 H 0.27 14.17 8.31 -92.70 -0.77 13.40 15 20 H 0.02 1.34 8.14 -2.38 -0.02 1.32 15 21 H 0.05 2.43 7.47 -2.39 -0.02 2.42 15 22 H 0.41 12.42 8.07 -92.71 -0.75 11.67 15 23 H 0.43 9.10 8.96 -92.71 -0.83 8.27 15 24 H 0.11 2.39 8.14 -2.38 -0.02 2.37 15 25 H 0.10 2.28 8.14 -2.39 -0.02 2.26 15 26 H 0.12 3.02 8.14 -2.38 -0.02 3.01 15 27 H 0.12 3.11 8.14 -2.39 -0.02 3.09 15 Total: -1.00 -63.76 252.04 1.83 -61.93 By element: Atomic # 1 Polarization: 18.41 SS G_CDS: -0.37 Total: 18.05 kcal Atomic # 6 Polarization: -8.83 SS G_CDS: 3.54 Total: -5.30 kcal Atomic # 7 Polarization: -108.64 SS G_CDS: -2.05 Total: -110.69 kcal Atomic # 14 Polarization: 42.25 SS G_CDS: 2.03 Total: 44.27 kcal Atomic # 16 Polarization: -6.95 SS G_CDS: -1.32 Total: -8.27 kcal Total: -63.76 1.83 -61.93 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238583751.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.715 kcal (2) G-P(sol) polarization free energy of solvation -63.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.931 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds