Wall clock time and date at job start Mon Mar 30 2020 02:42:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30826 * 1 3 3 Si 1.86808 * 120.00146 * 2 1 4 4 H 1.48502 * 109.47015 * 270.00024 * 3 2 1 5 5 H 1.48500 * 109.46774 * 30.00503 * 3 2 1 6 6 H 1.48496 * 109.46724 * 150.00005 * 3 2 1 7 7 C 1.39933 * 120.00139 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00206 * 162.61199 * 7 2 1 9 9 C 1.41440 * 119.99692 * 342.61120 * 7 2 1 10 10 C 1.40761 * 120.16980 * 154.92727 * 9 7 2 11 11 C 1.37824 * 120.02784 * 179.97438 * 10 9 7 12 12 Cl 1.73605 * 119.80614 * 179.97438 * 11 10 9 13 13 C 1.38488 * 120.38579 * 359.97438 * 11 10 9 14 14 C 1.39861 * 120.34274 * 0.02562 * 13 11 10 15 15 C 1.47892 * 120.01962 * 179.97438 * 14 13 11 16 16 N 1.34783 * 119.99901 * 359.97438 * 15 14 13 17 17 O 1.21545 * 120.00389 * 179.97438 * 15 14 13 18 18 C 1.39033 * 119.96388 * 359.97438 * 14 13 11 19 19 H 0.96999 * 119.99627 * 359.97438 * 1 2 3 20 20 H 1.08000 * 119.98945 * 0.02562 * 10 9 7 21 21 H 1.08003 * 119.82650 * 179.73889 * 13 11 10 22 22 H 0.96995 * 119.99795 * 359.97438 * 16 15 14 23 23 H 0.97002 * 120.00142 * 180.02562 * 16 15 14 24 24 H 1.07999 * 120.18735 * 180.02562 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.4898 2.0464 -1.4001 5 1 1.4398 2.6526 0.7002 6 1 3.5398 1.4401 0.7000 7 6 2.0080 -1.2118 -0.0005 8 1 3.0510 -1.2331 -0.2801 9 6 1.3492 -2.4089 0.3650 10 6 1.8190 -3.6481 -0.1093 11 6 1.1752 -4.8128 0.2492 12 17 1.7591 -6.3380 -0.3396 13 6 0.0651 -4.7736 1.0763 14 6 -0.4152 -3.5510 1.5567 15 6 -1.6015 -3.5173 2.4391 16 7 -2.2204 -4.6650 2.7802 17 8 -2.0184 -2.4547 2.8568 18 6 0.2233 -2.3673 1.2042 19 1 -0.4849 0.8401 0.0004 20 1 2.6849 -3.6864 -0.7537 21 1 -0.4350 -5.6914 1.3481 22 1 -1.8880 -5.5129 2.4466 23 1 -2.9988 -4.6429 3.3587 24 1 -0.1443 -1.4212 1.5734 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238605839.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:42 Heat of formation + Delta-G solvation = -41.713064 kcal Electronic energy + Delta-G solvation = -12768.994704 eV Core-core repulsion = 10286.138043 eV Total energy + Delta-G solvation = -2482.856661 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 225.030 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.05637 -37.21460 -35.60295 -33.88205 -33.03708 -30.15803 -29.32823 -25.54892 -23.05118 -21.18397 -19.65629 -17.90057 -16.92119 -15.78262 -15.27260 -14.81588 -14.17103 -13.98709 -13.69094 -13.09977 -12.79749 -12.29866 -11.66878 -11.32252 -11.14974 -10.75394 -10.42631 -10.31695 -10.21721 -10.00368 -9.32908 -9.23067 -9.20012 -7.84668 -7.57300 -6.95951 -4.59134 2.01942 2.53977 2.97796 3.01051 3.03826 3.08881 3.72033 3.82278 4.16062 4.47798 5.37417 5.64828 6.00557 6.46736 6.63443 6.73296 6.97933 7.00438 7.23218 7.37309 7.50303 7.62091 7.88211 7.96892 8.29650 8.59005 8.61607 8.89887 9.98651 Molecular weight = 225.03amu Principal moments of inertia in cm(-1) A = 0.022491 B = 0.010626 C = 0.007371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.646643 B = 2634.505289 C = 3797.889910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.777 5.777 2 C 0.072 3.928 3 Si 0.914 3.086 4 H -0.267 1.267 5 H -0.273 1.273 6 H -0.258 1.258 7 C -0.450 4.450 8 H 0.086 0.914 9 C 0.108 3.892 10 C -0.206 4.206 11 C 0.005 3.995 12 Cl -0.120 7.120 13 C -0.215 4.215 14 C -0.119 4.119 15 C 0.568 3.432 16 N -0.861 5.861 17 O -0.549 6.549 18 C -0.089 4.089 19 H 0.288 0.712 20 H 0.108 0.892 21 H 0.103 0.897 22 H 0.399 0.601 23 H 0.394 0.606 24 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.046 -5.566 1.335 5.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.400 5.400 2 C -0.148 4.148 3 Si 0.738 3.262 4 H -0.193 1.193 5 H -0.198 1.198 6 H -0.182 1.182 7 C -0.478 4.478 8 H 0.104 0.896 9 C 0.105 3.895 10 C -0.227 4.227 11 C -0.021 4.021 12 Cl -0.092 7.092 13 C -0.235 4.235 14 C -0.123 4.123 15 C 0.356 3.644 16 N -0.424 5.424 17 O -0.427 6.427 18 C -0.109 4.109 19 H 0.099 0.901 20 H 0.126 0.874 21 H 0.121 0.879 22 H 0.228 0.772 23 H 0.223 0.777 24 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -0.335 -4.758 1.438 4.981 hybrid contribution 0.139 0.039 -0.088 0.169 sum -0.196 -4.718 1.350 4.912 Atomic orbital electron populations 1.69770 1.07684 1.30267 1.32308 1.26015 0.94839 1.01821 0.92135 0.86202 0.80599 0.80025 0.79403 1.19253 1.19793 1.18203 1.19619 0.98198 0.90662 1.39341 0.89598 1.17477 0.91102 0.91802 0.89137 1.20995 1.04248 0.90901 1.06554 1.20395 0.97268 0.84438 1.00002 1.98269 1.88881 1.33720 1.88329 1.20159 1.00353 0.95874 1.07152 1.19363 0.96860 0.94480 1.01608 1.18644 0.83149 0.83123 0.79436 1.43816 1.34361 1.09551 1.54720 1.90744 1.66492 1.30145 1.55322 1.21747 0.96170 0.96738 0.96237 0.90064 0.87352 0.87933 0.77166 0.77658 0.84330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.70 10.97 55.55 0.61 -19.09 14 2 C 0.07 1.75 5.14 -17.35 -0.09 1.66 14 3 Si 0.91 17.96 29.59 -169.99 -5.03 12.93 14 4 H -0.27 -5.15 7.11 56.52 0.40 -4.75 14 5 H -0.27 -5.31 7.11 56.52 0.40 -4.91 14 6 H -0.26 -5.01 7.11 56.52 0.40 -4.61 14 7 C -0.45 -11.28 9.05 -37.73 -0.34 -11.62 14 8 H 0.09 2.03 7.90 -52.48 -0.41 1.62 14 9 C 0.11 2.74 5.57 -106.88 -0.59 2.14 14 10 C -0.21 -4.78 9.55 -38.78 -0.37 -5.15 14 11 C 0.01 0.11 6.30 -39.64 -0.25 -0.14 14 12 Cl -0.12 -2.16 28.94 -51.86 -1.50 -3.66 14 13 C -0.21 -4.40 9.32 -38.88 -0.36 -4.76 14 14 C -0.12 -2.72 5.87 -105.04 -0.62 -3.33 14 15 C 0.57 11.97 8.05 -12.31 -0.10 11.87 14 16 N -0.86 -12.96 8.82 30.54 0.27 -12.69 14 17 O -0.55 -13.52 17.17 5.33 0.09 -13.43 14 18 C -0.09 -2.27 8.23 -38.44 -0.32 -2.59 14 19 H 0.29 6.69 8.30 -40.82 -0.34 6.35 14 20 H 0.11 2.37 8.06 -52.49 -0.42 1.95 14 21 H 0.10 1.75 6.38 -52.48 -0.33 1.42 14 22 H 0.40 5.04 6.85 -40.82 -0.28 4.76 14 23 H 0.39 4.96 8.93 -40.82 -0.36 4.59 14 24 H 0.14 3.83 5.77 -52.49 -0.30 3.52 14 LS Contribution 236.08 15.07 3.56 3.56 Total: -1.00 -28.06 236.08 -6.30 -34.36 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: -1.25 Total: 9.94 kcal Atomic # 6 Polarization: -8.88 SS G_CDS: -3.04 Total: -11.92 kcal Atomic # 7 Polarization: -32.66 SS G_CDS: 0.88 Total: -31.78 kcal Atomic # 8 Polarization: -13.52 SS G_CDS: 0.09 Total: -13.43 kcal Atomic # 14 Polarization: 17.96 SS G_CDS: -5.03 Total: 12.93 kcal Atomic # 17 Polarization: -2.16 SS G_CDS: -1.50 Total: -3.66 kcal Total LS contribution 3.56 Total: 3.56 kcal Total: -28.06 -6.30 -34.36 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238605839.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.354 kcal (2) G-P(sol) polarization free energy of solvation -28.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds