Wall clock time and date at job start Mon Mar 30 2020 02:42:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30826 * 1 3 3 Si 1.86808 * 120.00146 * 2 1 4 4 H 1.48502 * 109.47015 * 270.00024 * 3 2 1 5 5 H 1.48500 * 109.46774 * 30.00503 * 3 2 1 6 6 H 1.48496 * 109.46724 * 150.00005 * 3 2 1 7 7 C 1.39933 * 120.00139 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00206 * 162.61199 * 7 2 1 9 9 C 1.41440 * 119.99692 * 342.61120 * 7 2 1 10 10 C 1.40761 * 120.16980 * 154.92727 * 9 7 2 11 11 C 1.37824 * 120.02784 * 179.97438 * 10 9 7 12 12 Cl 1.73605 * 119.80614 * 179.97438 * 11 10 9 13 13 C 1.38488 * 120.38579 * 359.97438 * 11 10 9 14 14 C 1.39861 * 120.34274 * 0.02562 * 13 11 10 15 15 C 1.47892 * 120.01962 * 179.97438 * 14 13 11 16 16 N 1.34783 * 119.99901 * 359.97438 * 15 14 13 17 17 O 1.21545 * 120.00389 * 179.97438 * 15 14 13 18 18 C 1.39033 * 119.96388 * 359.97438 * 14 13 11 19 19 H 0.96999 * 119.99627 * 359.97438 * 1 2 3 20 20 H 1.08000 * 119.98945 * 0.02562 * 10 9 7 21 21 H 1.08003 * 119.82650 * 179.73889 * 13 11 10 22 22 H 0.96995 * 119.99795 * 359.97438 * 16 15 14 23 23 H 0.97002 * 120.00142 * 180.02562 * 16 15 14 24 24 H 1.07999 * 120.18735 * 180.02562 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.4898 2.0464 -1.4001 5 1 1.4398 2.6526 0.7002 6 1 3.5398 1.4401 0.7000 7 6 2.0080 -1.2118 -0.0005 8 1 3.0510 -1.2331 -0.2801 9 6 1.3492 -2.4089 0.3650 10 6 1.8190 -3.6481 -0.1093 11 6 1.1752 -4.8128 0.2492 12 17 1.7591 -6.3380 -0.3396 13 6 0.0651 -4.7736 1.0763 14 6 -0.4152 -3.5510 1.5567 15 6 -1.6015 -3.5173 2.4391 16 7 -2.2204 -4.6650 2.7802 17 8 -2.0184 -2.4547 2.8568 18 6 0.2233 -2.3673 1.2042 19 1 -0.4849 0.8401 0.0004 20 1 2.6849 -3.6864 -0.7537 21 1 -0.4350 -5.6914 1.3481 22 1 -1.8880 -5.5129 2.4466 23 1 -2.9988 -4.6429 3.3587 24 1 -0.1443 -1.4212 1.5734 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238605839.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:42 Heat of formation + Delta-G solvation = -60.756926 kcal Electronic energy + Delta-G solvation = -12769.820508 eV Core-core repulsion = 10286.138043 eV Total energy + Delta-G solvation = -2483.682465 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 225.030 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.75856 -38.95770 -37.21458 -35.64037 -34.61084 -31.92346 -31.10667 -27.37070 -24.77196 -22.97424 -21.33126 -19.60161 -18.51459 -17.44776 -16.97578 -16.54318 -15.83455 -15.68176 -15.43812 -14.80549 -14.48365 -13.98588 -13.35009 -13.03818 -12.79443 -12.37242 -12.11330 -11.97484 -11.97138 -11.67787 -11.08537 -10.96403 -10.67054 -9.64573 -9.33618 -8.73963 -6.47259 0.24095 0.76940 1.36345 1.39723 1.43666 1.54712 2.00971 2.18414 2.67335 2.73084 3.53465 4.08427 4.37799 4.70180 4.84371 4.93031 5.15041 5.21793 5.59254 5.69930 5.83987 5.93366 6.06086 6.39614 6.54294 6.76460 6.78270 7.39511 8.23010 Molecular weight = 225.03amu Principal moments of inertia in cm(-1) A = 0.022491 B = 0.010626 C = 0.007371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.646643 B = 2634.505289 C = 3797.889910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.817 5.817 2 C 0.032 3.968 3 Si 0.985 3.015 4 H -0.257 1.257 5 H -0.271 1.271 6 H -0.254 1.254 7 C -0.486 4.486 8 H 0.090 0.910 9 C 0.083 3.917 10 C -0.211 4.211 11 C -0.002 4.002 12 Cl -0.083 7.083 13 C -0.194 4.194 14 C -0.125 4.125 15 C 0.566 3.434 16 N -0.826 5.826 17 O -0.593 6.593 18 C -0.124 4.124 19 H 0.291 0.709 20 H 0.115 0.885 21 H 0.145 0.855 22 H 0.415 0.585 23 H 0.411 0.589 24 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.118 -7.357 1.368 7.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.441 5.441 2 C -0.184 4.184 3 Si 0.805 3.195 4 H -0.182 1.182 5 H -0.196 1.196 6 H -0.177 1.177 7 C -0.514 4.514 8 H 0.108 0.892 9 C 0.080 3.920 10 C -0.231 4.231 11 C -0.028 4.028 12 Cl -0.055 7.055 13 C -0.215 4.215 14 C -0.129 4.129 15 C 0.353 3.647 16 N -0.391 5.391 17 O -0.474 6.474 18 C -0.145 4.145 19 H 0.102 0.898 20 H 0.133 0.867 21 H 0.163 0.837 22 H 0.248 0.752 23 H 0.244 0.756 24 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -0.182 -6.630 1.472 6.794 hybrid contribution 0.058 0.318 -0.097 0.338 sum -0.124 -6.312 1.376 6.461 Atomic orbital electron populations 1.69853 1.09267 1.31160 1.33863 1.26874 0.95429 1.05016 0.91094 0.85152 0.79116 0.75486 0.79764 1.18172 1.19570 1.17738 1.19899 0.98635 0.91696 1.41176 0.89215 1.17762 0.91586 0.93004 0.89645 1.21159 1.04477 0.91080 1.06409 1.20516 0.97106 0.85583 0.99617 1.98280 1.88493 1.30840 1.87855 1.20558 0.99439 0.96452 1.05040 1.19625 0.97237 0.94482 1.01571 1.18502 0.82984 0.83929 0.79238 1.43441 1.33819 1.08382 1.53415 1.90729 1.67575 1.32153 1.56983 1.21587 0.97814 0.96824 0.98251 0.89819 0.86668 0.83726 0.75206 0.75624 0.87342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -43.33 10.97 21.82 0.24 -43.09 14 2 C 0.03 1.61 5.14 85.25 0.44 2.05 14 3 Si 0.98 37.63 29.59 68.60 2.03 39.66 14 4 H -0.26 -9.32 7.11 99.48 0.71 -8.61 14 5 H -0.27 -10.13 7.11 99.48 0.71 -9.42 14 6 H -0.25 -9.39 7.11 99.48 0.71 -8.69 14 7 C -0.49 -25.18 9.05 23.47 0.21 -24.96 14 8 H 0.09 4.37 7.90 -2.91 -0.02 4.35 14 9 C 0.08 4.32 5.57 -21.33 -0.12 4.20 14 10 C -0.21 -9.68 9.55 22.79 0.22 -9.46 14 11 C 0.00 -0.07 6.30 22.23 0.14 0.07 14 12 Cl -0.08 -2.71 28.94 -2.72 -0.08 -2.79 14 13 C -0.19 -7.46 9.32 22.72 0.21 -7.25 14 14 C -0.13 -5.64 5.87 -20.14 -0.12 -5.76 14 15 C 0.57 23.31 8.05 86.80 0.70 24.00 14 16 N -0.83 -22.29 8.82 -175.57 -1.55 -23.84 14 17 O -0.59 -29.58 17.17 -3.86 -0.07 -29.65 14 18 C -0.12 -6.57 8.23 23.01 0.19 -6.38 14 19 H 0.29 14.16 8.30 -92.71 -0.77 13.39 14 20 H 0.12 5.00 8.06 -2.91 -0.02 4.98 14 21 H 0.15 4.23 6.38 -2.91 -0.02 4.21 14 22 H 0.42 8.63 6.85 -92.71 -0.63 7.99 14 23 H 0.41 9.02 8.93 -92.71 -0.83 8.19 14 24 H 0.11 6.36 5.77 -2.91 -0.02 6.34 14 Total: -1.00 -62.74 236.08 2.25 -60.49 By element: Atomic # 1 Polarization: 22.92 SS G_CDS: -0.19 Total: 22.73 kcal Atomic # 6 Polarization: -25.37 SS G_CDS: 1.87 Total: -23.50 kcal Atomic # 7 Polarization: -65.63 SS G_CDS: -1.31 Total: -66.94 kcal Atomic # 8 Polarization: -29.58 SS G_CDS: -0.07 Total: -29.65 kcal Atomic # 14 Polarization: 37.63 SS G_CDS: 2.03 Total: 39.66 kcal Atomic # 17 Polarization: -2.71 SS G_CDS: -0.08 Total: -2.79 kcal Total: -62.74 2.25 -60.49 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238605839.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.266 kcal (2) G-P(sol) polarization free energy of solvation -62.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds