Wall clock time and date at job start Mon Mar 30 2020 02:42:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30837 * 1 3 3 Si 1.86793 * 119.99866 * 2 1 4 4 H 1.48493 * 109.47259 * 239.99834 * 3 2 1 5 5 H 1.48498 * 109.47528 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46831 * 119.99918 * 3 2 1 7 7 C 1.39940 * 119.99617 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99724 * 162.39454 * 7 2 1 9 9 C 1.41363 * 120.00519 * 342.66649 * 7 2 1 10 10 C 1.40761 * 120.18476 * 334.47218 * 9 7 2 11 11 C 1.37709 * 120.06279 * 179.76052 * 10 9 7 12 12 C 1.38377 * 120.45885 * 0.51333 * 11 10 9 13 13 C 1.39862 * 120.37817 * 359.74240 * 12 11 10 14 14 C 1.47805 * 120.03979 * 179.97438 * 13 12 11 15 15 N 1.34774 * 119.99448 * 0.02562 * 14 13 12 16 16 O 1.21562 * 119.99800 * 180.02562 * 14 13 12 17 17 C 1.39235 * 119.92497 * 359.97438 * 13 12 11 18 18 Cl 1.73598 * 120.22638 * 179.97438 * 17 13 12 19 19 H 0.96998 * 120.00111 * 359.97438 * 1 2 3 20 20 H 1.08000 * 119.96719 * 359.97438 * 10 9 7 21 21 H 1.08001 * 119.77193 * 180.25223 * 11 10 9 22 22 H 1.07997 * 119.80852 * 179.75788 * 12 11 10 23 23 H 0.96998 * 120.00516 * 359.97438 * 15 14 13 24 24 H 0.97006 * 119.99626 * 180.02562 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0960 1.6964 -1.2124 5 1 1.2774 2.7464 0.0006 6 1 3.0960 1.6963 1.2126 7 6 2.0080 -1.2120 -0.0005 8 1 3.0500 -1.2338 -0.2835 9 6 1.3493 -2.4086 0.3636 10 6 0.2256 -2.3684 1.2104 11 6 -0.4171 -3.5352 1.5596 12 6 0.0400 -4.7548 1.0920 13 6 1.1580 -4.8171 0.2540 14 6 1.6401 -6.1238 -0.2406 15 7 1.0019 -7.2561 0.1155 16 8 2.6122 -6.1770 -0.9686 17 6 1.8164 -3.6466 -0.1139 18 17 3.2052 -3.7149 -1.1531 19 1 -0.4850 0.8400 0.0004 20 1 -0.1350 -1.4214 1.5838 21 1 -1.2813 -3.4986 2.2063 22 1 -0.4697 -5.6637 1.3757 23 1 0.2265 -7.2136 0.6967 24 1 1.3185 -8.1138 -0.2088 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238625266.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:44 Heat of formation + Delta-G solvation = -29.972335 kcal Electronic energy + Delta-G solvation = -12931.446178 eV Core-core repulsion = 10449.098633 eV Total energy + Delta-G solvation = -2482.347545 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 225.030 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.01290 -37.09958 -34.87804 -33.91395 -32.99720 -29.94214 -29.49654 -25.44777 -22.96129 -20.90435 -19.89332 -17.88257 -16.66450 -15.96903 -15.20050 -14.88964 -14.00891 -13.90160 -13.66876 -12.88596 -12.75958 -12.00278 -11.52666 -11.25791 -11.03083 -10.71965 -10.41793 -10.21882 -10.10483 -9.67575 -9.32770 -9.15647 -8.52548 -7.72640 -7.50503 -6.94434 -4.53913 2.03533 2.56065 3.01009 3.03984 3.08293 3.72405 3.81037 3.85188 4.16631 4.48933 5.38054 5.64655 5.94725 6.23549 6.72371 6.74980 7.02961 7.05642 7.24432 7.29754 7.61175 7.71576 7.83802 8.01488 8.34999 8.59153 8.65434 8.91867 10.00008 Molecular weight = 225.03amu Principal moments of inertia in cm(-1) A = 0.039038 B = 0.010003 C = 0.008139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.077235 B = 2798.432694 C = 3439.210940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.787 5.787 2 C 0.076 3.924 3 Si 0.913 3.087 4 H -0.262 1.262 5 H -0.277 1.277 6 H -0.261 1.261 7 C -0.444 4.444 8 H 0.090 0.910 9 C 0.106 3.894 10 C -0.135 4.135 11 C -0.110 4.110 12 C -0.204 4.204 13 C -0.111 4.111 14 C 0.559 3.441 15 N -0.861 5.861 16 O -0.533 6.533 17 C -0.081 4.081 18 Cl -0.080 7.080 19 H 0.285 0.715 20 H 0.128 0.872 21 H 0.099 0.901 22 H 0.099 0.901 23 H 0.397 0.603 24 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.579 -4.250 2.729 5.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.412 5.412 2 C -0.143 4.143 3 Si 0.737 3.263 4 H -0.187 1.187 5 H -0.202 1.202 6 H -0.186 1.186 7 C -0.473 4.473 8 H 0.108 0.892 9 C 0.102 3.898 10 C -0.155 4.155 11 C -0.128 4.128 12 C -0.224 4.224 13 C -0.115 4.115 14 C 0.347 3.653 15 N -0.426 5.426 16 O -0.410 6.410 17 C -0.110 4.110 18 Cl -0.051 7.051 19 H 0.096 0.904 20 H 0.145 0.855 21 H 0.118 0.882 22 H 0.117 0.883 23 H 0.227 0.773 24 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -1.014 -3.916 2.147 4.579 hybrid contribution -0.035 0.359 0.084 0.371 sum -1.049 -3.556 2.231 4.327 Atomic orbital electron populations 1.69788 1.07693 1.29905 1.33776 1.25961 0.94783 1.01654 0.91936 0.86258 0.80141 0.79510 0.80364 1.18660 1.20201 1.18559 1.19679 0.98649 0.90499 1.38423 0.89178 1.17417 0.91787 0.90611 0.89945 1.21424 0.97836 0.97423 0.98834 1.20666 0.99121 0.92845 1.00182 1.20356 0.99405 0.96920 1.05758 1.19143 0.98672 0.91026 1.02625 1.18652 0.82368 0.84759 0.79566 1.43831 1.35060 1.08685 1.55030 1.90825 1.26411 1.87370 1.36379 1.20991 0.94489 0.93688 1.01801 1.98251 1.42039 1.98502 1.66291 0.90401 0.85465 0.88245 0.88271 0.77328 0.77687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.18 10.99 55.55 0.61 -18.57 14 2 C 0.08 1.82 5.14 -17.34 -0.09 1.73 14 3 Si 0.91 18.09 29.59 -169.99 -5.03 13.06 14 4 H -0.26 -5.22 7.11 56.52 0.40 -4.82 14 5 H -0.28 -5.29 7.11 56.52 0.40 -4.89 14 6 H -0.26 -5.12 7.11 56.52 0.40 -4.72 14 7 C -0.44 -11.41 8.52 -37.76 -0.32 -11.73 14 8 H 0.09 2.30 7.11 -52.49 -0.37 1.92 14 9 C 0.11 2.73 5.56 -106.84 -0.59 2.13 14 10 C -0.14 -3.25 8.68 -38.82 -0.34 -3.59 14 11 C -0.11 -2.30 10.00 -39.72 -0.40 -2.70 14 12 C -0.20 -4.08 9.55 -38.92 -0.37 -4.45 14 13 C -0.11 -2.48 5.87 -105.01 -0.62 -3.10 14 14 C 0.56 11.46 8.04 -12.35 -0.10 11.36 14 15 N -0.86 -12.57 8.82 30.52 0.27 -12.30 14 16 O -0.53 -12.50 14.79 5.31 0.08 -12.42 14 17 C -0.08 -2.03 6.41 -38.29 -0.25 -2.27 14 18 Cl -0.08 -1.94 24.64 -51.86 -1.28 -3.22 14 19 H 0.28 6.30 8.30 -40.82 -0.34 5.96 14 20 H 0.13 3.10 6.20 -52.49 -0.33 2.78 14 21 H 0.10 1.78 8.06 -52.49 -0.42 1.36 14 22 H 0.10 1.57 6.38 -52.49 -0.33 1.24 14 23 H 0.40 4.79 6.85 -40.82 -0.28 4.51 14 24 H 0.39 4.81 8.93 -40.82 -0.36 4.45 14 LS Contribution 229.74 15.07 3.46 3.46 Total: -1.00 -28.64 229.74 -6.19 -34.83 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: -1.23 Total: 7.78 kcal Atomic # 6 Polarization: -9.55 SS G_CDS: -3.07 Total: -12.62 kcal Atomic # 7 Polarization: -31.75 SS G_CDS: 0.88 Total: -30.87 kcal Atomic # 8 Polarization: -12.50 SS G_CDS: 0.08 Total: -12.42 kcal Atomic # 14 Polarization: 18.09 SS G_CDS: -5.03 Total: 13.06 kcal Atomic # 17 Polarization: -1.94 SS G_CDS: -1.28 Total: -3.22 kcal Total LS contribution 3.46 Total: 3.46 kcal Total: -28.64 -6.19 -34.83 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238625266.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.862 kcal (2) G-P(sol) polarization free energy of solvation -28.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds