Wall clock time and date at job start Mon Mar 30 2020 02:48:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30570 * 1 3 3 Si 1.86800 * 119.99732 * 2 1 4 4 H 1.48499 * 109.47425 * 180.27845 * 3 2 1 5 5 H 1.48507 * 109.47064 * 300.27250 * 3 2 1 6 6 H 1.48498 * 109.47428 * 60.27667 * 3 2 1 7 7 C 1.40240 * 120.00550 * 180.27467 * 2 1 3 8 8 H 1.07996 * 120.00158 * 179.72370 * 7 2 1 9 9 C 1.41793 * 119.99383 * 359.72571 * 7 2 1 10 10 O 1.22004 * 120.00377 * 334.60865 * 9 7 2 11 11 C 1.46550 * 120.00068 * 154.61385 * 9 7 2 12 12 C 1.40607 * 121.07312 * 185.21042 * 11 9 7 13 13 N 1.36095 * 120.53626 * 359.96404 * 12 11 9 14 14 N 1.36582 * 118.92134 * 179.72511 * 12 11 9 15 15 H 0.97000 * 119.34095 * 180.24423 * 14 12 11 16 16 C 1.34218 * 121.30935 * 0.58052 * 14 12 11 17 17 O 1.21544 * 118.78617 * 179.69038 * 16 14 12 18 18 N 1.34285 * 122.41840 * 359.66401 * 16 14 12 19 19 H 0.97011 * 119.56521 * 180.02562 * 18 16 14 20 20 C 1.34897 * 120.86983 * 0.05048 * 18 16 14 21 21 O 1.21721 * 120.69274 * 179.97438 * 20 18 16 22 22 H 0.97001 * 120.00358 * 359.72885 * 1 2 3 23 23 H 0.97002 * 119.99894 * 20.84090 * 13 12 11 24 24 H 0.96998 * 120.00148 * 200.82918 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3057 0.0000 0.0000 3 14 2.2396 1.6178 0.0000 4 1 3.6996 1.3466 -0.0068 5 1 1.8758 2.3994 -1.2092 6 1 1.8860 2.3936 1.2158 7 6 2.0070 -1.2144 -0.0058 8 1 3.0870 -1.2143 -0.0103 9 6 1.2981 -2.4424 -0.0058 10 8 0.1683 -2.4946 0.4518 11 6 1.9224 -3.6490 -0.5554 12 6 1.2031 -4.8520 -0.6665 13 7 -0.0948 -4.9214 -0.2630 14 7 1.8266 -5.9484 -1.1905 15 1 1.3350 -6.7806 -1.2732 16 6 3.1080 -5.8991 -1.5870 17 8 3.6191 -6.9038 -2.0415 18 7 3.8458 -4.7805 -1.5004 19 1 4.7685 -4.7913 -1.7998 20 6 3.3209 -3.6420 -1.0023 21 8 3.9928 -2.6300 -0.9249 22 1 -0.4851 0.8400 0.0040 23 1 -0.6221 -4.1111 -0.1840 24 1 -0.4926 -5.7812 -0.0546 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238626194.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:00 Heat of formation + Delta-G solvation = -79.681545 kcal Electronic energy + Delta-G solvation = -15368.299342 eV Core-core repulsion = 12475.379830 eV Total energy + Delta-G solvation = -2892.919512 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 225.058 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.54255 -38.25768 -37.66775 -36.06959 -34.13232 -33.02429 -32.35701 -29.41770 -26.45593 -23.64216 -23.00880 -21.19155 -19.07276 -18.14451 -17.30321 -16.48500 -16.34475 -16.17871 -15.47962 -15.05100 -14.66451 -13.54072 -13.46415 -13.23121 -12.70415 -12.48330 -11.66100 -11.20624 -10.99248 -10.92723 -10.53704 -10.17938 -9.86098 -9.67874 -8.86242 -8.82505 -7.46801 -7.17627 -6.28903 -4.58277 1.76933 2.38524 2.43440 3.15808 3.26125 3.36616 3.56233 3.87546 4.19685 4.20962 4.62166 5.24117 5.70744 5.79446 5.99623 6.51195 6.58583 6.97270 7.43079 7.47488 7.62865 7.93492 8.08283 8.52711 8.77345 8.97153 9.12445 10.37204 10.61428 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.039661 B = 0.009732 C = 0.007923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.809376 B = 2876.468225 C = 3533.370330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.767 5.767 2 C 0.083 3.917 3 Si 0.906 3.094 4 H -0.258 1.258 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.512 4.512 8 H 0.104 0.896 9 C 0.443 3.557 10 O -0.566 6.566 11 C -0.369 4.369 12 C 0.465 3.535 13 N -0.819 5.819 14 N -0.649 5.649 15 H 0.423 0.577 16 C 0.716 3.284 17 O -0.569 6.569 18 N -0.664 5.664 19 H 0.422 0.578 20 C 0.560 3.440 21 O -0.492 6.492 22 H 0.270 0.730 23 H 0.438 0.562 24 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.699 -8.825 -2.102 9.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.137 4.137 3 Si 0.731 3.269 4 H -0.182 1.182 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.544 4.544 8 H 0.122 0.878 9 C 0.342 3.658 10 O -0.459 6.459 11 C -0.387 4.387 12 C 0.249 3.751 13 N -0.373 5.373 14 N -0.299 5.299 15 H 0.262 0.738 16 C 0.416 3.584 17 O -0.445 6.445 18 N -0.334 5.334 19 H 0.263 0.737 20 C 0.356 3.644 21 O -0.365 6.365 22 H 0.081 0.919 23 H 0.286 0.714 24 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 0.613 -8.547 -2.057 8.812 hybrid contribution 0.253 0.172 -0.221 0.378 sum 0.866 -8.375 -2.278 8.723 Atomic orbital electron populations 1.69878 1.07520 1.27880 1.34427 1.25975 0.94515 1.00997 0.92241 0.86318 0.81389 0.81196 0.78012 1.18155 1.20248 1.20212 1.21347 0.97088 0.90545 1.45461 0.87825 1.17098 0.86037 0.84617 0.78018 1.90230 1.21947 1.85417 1.48285 1.22816 0.93189 0.97093 1.25560 1.18462 0.84669 0.85607 0.86404 1.42725 1.08903 1.14625 1.71074 1.42647 1.12186 1.14482 1.60559 0.73762 1.15363 0.80462 0.83981 0.78558 1.91033 1.69654 1.33223 1.50557 1.44747 1.16903 1.10919 1.60826 0.73691 1.18413 0.88256 0.81389 0.76358 1.90804 1.62264 1.30144 1.53281 0.91924 0.71390 0.78222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -21.84 12.04 55.56 0.67 -21.17 14 2 C 0.08 2.29 5.47 -17.34 -0.09 2.19 14 3 Si 0.91 20.63 29.56 -169.99 -5.02 15.61 14 4 H -0.26 -5.90 7.11 56.52 0.40 -5.50 14 5 H -0.28 -6.11 7.11 56.52 0.40 -5.71 14 6 H -0.28 -6.11 7.11 56.52 0.40 -5.71 14 7 C -0.51 -14.71 8.44 -37.47 -0.32 -15.03 14 8 H 0.10 3.00 5.24 -52.49 -0.28 2.72 14 9 C 0.44 12.11 6.69 -34.87 -0.23 11.88 14 10 O -0.57 -16.03 12.92 4.91 0.06 -15.96 14 11 C -0.37 -8.21 6.10 -102.18 -0.62 -8.84 14 12 C 0.46 7.89 7.86 -153.50 -1.21 6.69 14 13 N -0.82 -12.09 8.55 31.62 0.27 -11.82 14 14 N -0.65 -8.84 5.24 -15.52 -0.08 -8.92 14 15 H 0.42 4.16 8.86 -40.82 -0.36 3.80 14 16 C 0.72 11.29 8.57 -87.86 -0.75 10.54 14 17 O -0.57 -9.69 17.93 5.33 0.10 -9.59 14 18 N -0.66 -11.05 5.19 -17.14 -0.09 -11.14 14 19 H 0.42 6.04 8.86 -40.82 -0.36 5.68 14 20 C 0.56 11.82 7.90 -12.74 -0.10 11.72 14 21 O -0.49 -11.91 14.50 5.17 0.07 -11.84 14 22 H 0.27 6.97 8.29 -40.82 -0.34 6.64 14 23 H 0.44 7.98 6.00 -40.82 -0.25 7.73 14 24 H 0.39 3.86 8.95 -40.82 -0.37 3.49 14 LS Contribution 224.48 15.07 3.38 3.38 Total: -1.00 -34.46 224.48 -4.71 -39.17 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: -0.74 Total: 13.13 kcal Atomic # 6 Polarization: 22.48 SS G_CDS: -3.33 Total: 19.15 kcal Atomic # 7 Polarization: -53.82 SS G_CDS: 0.77 Total: -53.05 kcal Atomic # 8 Polarization: -37.63 SS G_CDS: 0.23 Total: -37.39 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 3.38 Total: 3.38 kcal Total: -34.46 -4.71 -39.17 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238626194.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.511 kcal (2) G-P(sol) polarization free energy of solvation -34.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds