Wall clock time and date at job start Mon Mar 30 2020 02:47:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30570 * 1 3 3 Si 1.86800 * 119.99732 * 2 1 4 4 H 1.48499 * 109.47425 * 180.27845 * 3 2 1 5 5 H 1.48507 * 109.47064 * 300.27250 * 3 2 1 6 6 H 1.48498 * 109.47428 * 60.27667 * 3 2 1 7 7 C 1.40240 * 120.00550 * 180.27467 * 2 1 3 8 8 H 1.07996 * 120.00158 * 179.72370 * 7 2 1 9 9 C 1.41793 * 119.99383 * 359.72571 * 7 2 1 10 10 O 1.22004 * 120.00377 * 334.60865 * 9 7 2 11 11 C 1.46550 * 120.00068 * 154.61385 * 9 7 2 12 12 C 1.40607 * 121.07312 * 185.21042 * 11 9 7 13 13 N 1.36095 * 120.53626 * 359.96404 * 12 11 9 14 14 N 1.36582 * 118.92134 * 179.72511 * 12 11 9 15 15 H 0.97000 * 119.34095 * 180.24423 * 14 12 11 16 16 C 1.34218 * 121.30935 * 0.58052 * 14 12 11 17 17 O 1.21544 * 118.78617 * 179.69038 * 16 14 12 18 18 N 1.34285 * 122.41840 * 359.66401 * 16 14 12 19 19 H 0.97011 * 119.56521 * 180.02562 * 18 16 14 20 20 C 1.34897 * 120.86983 * 0.05048 * 18 16 14 21 21 O 1.21721 * 120.69274 * 179.97438 * 20 18 16 22 22 H 0.97001 * 120.00358 * 359.72885 * 1 2 3 23 23 H 0.97002 * 119.99894 * 20.84090 * 13 12 11 24 24 H 0.96998 * 120.00148 * 200.82918 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3057 0.0000 0.0000 3 14 2.2396 1.6178 0.0000 4 1 3.6996 1.3466 -0.0068 5 1 1.8758 2.3994 -1.2092 6 1 1.8860 2.3936 1.2158 7 6 2.0070 -1.2144 -0.0058 8 1 3.0870 -1.2143 -0.0103 9 6 1.2981 -2.4424 -0.0058 10 8 0.1683 -2.4946 0.4518 11 6 1.9224 -3.6490 -0.5554 12 6 1.2031 -4.8520 -0.6665 13 7 -0.0948 -4.9214 -0.2630 14 7 1.8266 -5.9484 -1.1905 15 1 1.3350 -6.7806 -1.2732 16 6 3.1080 -5.8991 -1.5870 17 8 3.6191 -6.9038 -2.0415 18 7 3.8458 -4.7805 -1.5004 19 1 4.7685 -4.7913 -1.7998 20 6 3.3209 -3.6420 -1.0023 21 8 3.9928 -2.6300 -0.9249 22 1 -0.4851 0.8400 0.0040 23 1 -0.6221 -4.1111 -0.1840 24 1 -0.4926 -5.7812 -0.0546 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238626194.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:59 Heat of formation + Delta-G solvation = -109.120676 kcal Electronic energy + Delta-G solvation = -15369.575918 eV Core-core repulsion = 12475.379830 eV Total energy + Delta-G solvation = -2894.196088 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 225.058 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.96945 -39.84109 -39.25166 -37.88244 -35.64478 -34.72798 -34.09472 -31.09904 -28.42290 -25.09968 -24.50158 -22.95868 -20.61000 -19.71471 -18.74359 -18.23343 -17.88624 -17.67427 -16.96706 -16.81734 -16.21707 -15.21182 -15.13818 -14.98805 -14.41650 -14.23411 -13.51417 -13.15075 -12.76864 -12.53979 -12.26129 -12.00214 -11.30935 -11.06025 -10.87436 -10.60084 -9.51023 -8.81189 -8.30482 -6.70093 0.26503 0.94512 1.09265 1.37106 1.40707 1.58003 2.08501 2.19006 2.33174 2.74956 2.88640 3.70560 3.79066 4.32230 4.54623 5.06507 5.30265 5.40398 5.48594 6.04540 6.15302 6.35222 6.65948 6.74098 6.94164 7.05069 7.24619 8.34535 8.61024 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.039661 B = 0.009732 C = 0.007923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.809376 B = 2876.468225 C = 3533.370330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.807 5.807 2 C 0.036 3.964 3 Si 0.977 3.023 4 H -0.265 1.265 5 H -0.263 1.263 6 H -0.263 1.263 7 C -0.556 4.556 8 H 0.093 0.907 9 C 0.434 3.566 10 O -0.591 6.591 11 C -0.435 4.435 12 C 0.519 3.481 13 N -0.796 5.796 14 N -0.622 5.622 15 H 0.447 0.553 16 C 0.724 3.276 17 O -0.568 6.568 18 N -0.652 5.652 19 H 0.434 0.566 20 C 0.565 3.435 21 O -0.536 6.536 22 H 0.278 0.722 23 H 0.431 0.569 24 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.495 -10.429 -2.564 10.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.438 5.438 2 C -0.181 4.181 3 Si 0.798 3.202 4 H -0.189 1.189 5 H -0.188 1.188 6 H -0.188 1.188 7 C -0.588 4.588 8 H 0.110 0.890 9 C 0.334 3.666 10 O -0.486 6.486 11 C -0.452 4.452 12 C 0.295 3.705 13 N -0.348 5.348 14 N -0.274 5.274 15 H 0.291 0.709 16 C 0.424 3.576 17 O -0.444 6.444 18 N -0.322 5.322 19 H 0.277 0.723 20 C 0.363 3.637 21 O -0.413 6.413 22 H 0.088 0.912 23 H 0.276 0.724 24 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 0.379 -10.265 -2.530 10.579 hybrid contribution 0.216 0.383 -0.088 0.449 sum 0.596 -9.882 -2.618 10.240 Atomic orbital electron populations 1.69937 1.08855 1.29236 1.35729 1.26865 0.95434 1.04408 0.91353 0.85269 0.79273 0.76747 0.78889 1.18908 1.18799 1.18807 1.21651 0.96959 0.92464 1.47720 0.88954 1.17378 0.85776 0.86268 0.77134 1.90181 1.22591 1.86593 1.49185 1.22031 0.94791 0.97729 1.30641 1.18012 0.84483 0.84878 0.83104 1.42678 1.07740 1.15971 1.68379 1.42391 1.11625 1.14442 1.58942 0.70854 1.15302 0.80709 0.83392 0.78236 1.91063 1.69704 1.33094 1.50569 1.44407 1.17579 1.10012 1.60159 0.72305 1.18203 0.87810 0.81722 0.75984 1.90764 1.63110 1.31950 1.55445 0.91191 0.72427 0.74810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -47.02 12.04 21.87 0.26 -46.75 14 2 C 0.04 2.02 5.47 85.37 0.47 2.48 14 3 Si 0.98 43.41 29.56 68.60 2.03 45.44 14 4 H -0.27 -11.92 7.11 99.48 0.71 -11.21 14 5 H -0.26 -10.99 7.11 99.48 0.71 -10.28 14 6 H -0.26 -11.01 7.11 99.48 0.71 -10.30 14 7 C -0.56 -33.13 8.44 23.64 0.20 -32.93 14 8 H 0.09 5.60 5.24 -2.91 -0.02 5.59 14 9 C 0.43 24.32 6.69 25.32 0.17 24.49 14 10 O -0.59 -34.07 12.92 -5.33 -0.07 -34.14 14 11 C -0.43 -19.30 6.10 -18.29 -0.11 -19.41 14 12 C 0.52 16.33 7.86 133.09 1.05 17.37 14 13 N -0.80 -21.19 8.55 -53.87 -0.46 -21.65 14 14 N -0.62 -14.58 5.24 -321.62 -1.68 -16.26 14 15 H 0.45 6.50 8.86 -92.71 -0.82 5.68 14 16 C 0.72 20.53 8.57 179.38 1.54 22.06 14 17 O -0.57 -17.26 17.93 -3.85 -0.07 -17.33 14 18 N -0.65 -20.69 5.19 -444.84 -2.31 -23.00 14 19 H 0.43 11.80 8.86 -92.70 -0.82 10.98 14 20 C 0.57 23.95 7.90 86.47 0.68 24.64 14 21 O -0.54 -26.80 14.50 -4.41 -0.06 -26.86 14 22 H 0.28 14.60 8.29 -92.71 -0.77 13.83 14 23 H 0.43 14.95 6.00 -92.71 -0.56 14.40 14 24 H 0.42 6.49 8.95 -92.71 -0.83 5.66 14 Total: -1.00 -77.45 224.48 -0.07 -77.52 By element: Atomic # 1 Polarization: 26.02 SS G_CDS: -1.69 Total: 24.33 kcal Atomic # 6 Polarization: 34.73 SS G_CDS: 3.99 Total: 38.72 kcal Atomic # 7 Polarization: -103.48 SS G_CDS: -4.19 Total: -107.67 kcal Atomic # 8 Polarization: -78.13 SS G_CDS: -0.20 Total: -78.33 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.44 kcal Total: -77.45 -0.07 -77.52 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238626194.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.605 kcal (2) G-P(sol) polarization free energy of solvation -77.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds