Wall clock time and date at job start Mon Mar 30 2020 02:37:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29490 * 1 3 3 Si 1.86797 * 119.99523 * 2 1 4 4 H 1.48501 * 109.47468 * 359.97438 * 3 2 1 5 5 H 1.48502 * 109.46986 * 120.00459 * 3 2 1 6 6 H 1.48507 * 109.46787 * 239.99582 * 3 2 1 7 7 C 1.46614 * 120.00042 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00021 * 155.36208 * 7 2 1 9 9 C 1.39270 * 120.00404 * 335.36805 * 7 2 1 10 10 C 1.41738 * 120.67569 * 334.94868 * 9 7 2 11 11 C 1.35746 * 119.85802 * 179.71795 * 10 9 7 12 12 C 1.39405 * 121.38351 * 0.56671 * 11 10 9 13 13 N 1.48009 * 119.28032 * 179.69009 * 12 11 10 14 14 O 1.31694 * 120.00041 * 180.02562 * 13 12 11 15 15 O 1.31697 * 119.99913 * 0.02562 * 13 12 11 16 16 C 1.37505 * 121.43815 * 359.71001 * 12 11 10 17 17 C 1.39492 * 120.00249 * 0.02562 * 16 12 11 18 18 S 1.76205 * 120.66344 * 180.02562 * 17 16 12 19 19 H 0.97005 * 120.00068 * 174.19943 * 1 2 3 20 20 H 1.08001 * 120.07227 * 359.97218 * 10 9 7 21 21 H 1.07994 * 119.31100 * 180.25969 * 11 10 9 22 22 H 1.08000 * 119.99759 * 180.02562 * 16 12 11 23 23 H 1.40999 * 99.99484 * 269.97640 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2949 0.0000 0.0000 3 14 2.2288 1.6178 0.0000 4 1 1.2637 2.7465 -0.0006 5 1 3.0826 1.6964 1.2125 6 1 3.0826 1.6964 -1.2125 7 6 2.0280 -1.2697 0.0006 8 1 3.0342 -1.3125 -0.3893 9 6 1.4268 -2.4208 0.5038 10 6 0.3880 -2.3333 1.4641 11 6 -0.1903 -3.4658 1.9391 12 6 0.2230 -4.7266 1.5112 13 7 -0.4354 -5.9309 2.0651 14 8 -0.0559 -7.1288 1.6712 15 8 -1.4009 -5.8044 2.9519 16 6 1.2292 -4.8757 0.5860 17 6 1.8607 -3.7510 0.0549 18 16 3.1517 -3.9218 -1.1321 19 1 -0.4850 -0.8358 -0.0849 20 1 0.0545 -1.3676 1.8141 21 1 -0.9839 -3.3888 2.6675 22 1 1.5307 -5.8636 0.2706 23 1 4.2675 -3.9869 -0.2725 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238664430.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:35 Heat of formation + Delta-G solvation = 15.467941 kcal Electronic energy + Delta-G solvation = -12724.334227 eV Core-core repulsion = 10246.000827 eV Total energy + Delta-G solvation = -2478.333401 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 225.025 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.62413 -37.00478 -34.72493 -33.10800 -30.76404 -30.31528 -27.11521 -24.06228 -22.06523 -21.25625 -19.01099 -17.78696 -16.86070 -16.12583 -15.44614 -14.92740 -14.68148 -14.36915 -13.68502 -13.15432 -13.02268 -12.19965 -11.87010 -11.63520 -11.06969 -10.97301 -10.68075 -10.18664 -10.03557 -10.02137 -9.84745 -9.61348 -8.72417 -8.56623 -8.22479 -7.48032 -5.60314 0.60502 1.78864 2.22076 2.42957 2.62570 2.71009 2.76392 2.86284 3.26546 3.31446 3.61041 4.48712 5.38355 5.66814 5.86827 5.99029 6.31151 6.38698 6.45844 6.62298 6.82187 6.96194 7.08339 7.30105 7.56640 7.75465 8.15391 8.80436 Molecular weight = 225.02amu Principal moments of inertia in cm(-1) A = 0.032106 B = 0.009114 C = 0.007290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.910532 B = 3071.521441 C = 3839.917144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.696 5.696 2 C 0.018 3.982 3 Si 1.078 2.922 4 H -0.261 1.261 5 H -0.262 1.262 6 H -0.259 1.259 7 C -0.357 4.357 8 H 0.116 0.884 9 C 0.082 3.918 10 C -0.200 4.200 11 C -0.021 4.021 12 C -0.144 4.144 13 N 0.041 4.959 14 O -0.295 6.295 15 O -0.292 6.292 16 C 0.047 3.953 17 C -0.221 4.221 18 S -0.140 6.140 19 H 0.318 0.682 20 H 0.125 0.875 21 H 0.123 0.877 22 H 0.133 0.867 23 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.131 6.506 -2.276 8.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.313 5.313 2 C -0.217 4.217 3 Si 0.896 3.104 4 H -0.185 1.185 5 H -0.187 1.187 6 H -0.183 1.183 7 C -0.381 4.381 8 H 0.133 0.867 9 C 0.075 3.925 10 C -0.222 4.222 11 C -0.041 4.041 12 C -0.245 4.245 13 N 0.476 4.524 14 O -0.458 6.458 15 O -0.456 6.456 16 C 0.025 3.975 17 C -0.337 4.337 18 S 0.018 5.982 19 H 0.135 0.865 20 H 0.143 0.857 21 H 0.141 0.859 22 H 0.151 0.849 23 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges 5.483 8.219 -3.137 10.366 hybrid contribution -0.263 -2.164 1.526 2.661 sum 5.220 6.055 -1.611 8.155 Atomic orbital electron populations 1.69977 1.08841 1.36574 1.15925 1.29489 0.95366 1.05550 0.91261 0.83441 0.75939 0.71432 0.79590 1.18525 1.18662 1.18339 1.22889 1.02116 0.92214 1.20838 0.86664 1.18921 0.91424 0.91396 0.90789 1.20882 1.02082 0.97099 1.02147 1.20072 0.97164 0.89867 0.97016 1.19447 1.08838 0.82527 1.13677 1.50115 0.99619 1.03669 0.99045 1.96124 1.72010 1.09340 1.68304 1.96120 1.24178 1.95132 1.30178 1.20892 0.89426 0.98687 0.88507 1.21946 1.07912 0.93468 1.10364 1.86322 1.02710 1.97015 1.12195 0.86522 0.85684 0.85909 0.84942 0.96686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -13.48 12.32 55.99 0.69 -12.79 14 2 C 0.02 0.33 5.13 -15.16 -0.08 0.25 14 3 Si 1.08 14.87 30.08 -169.99 -5.11 9.75 14 4 H -0.26 -3.66 7.11 56.52 0.40 -3.26 14 5 H -0.26 -3.50 7.11 56.52 0.40 -3.10 14 6 H -0.26 -3.37 7.11 56.52 0.40 -2.97 14 7 C -0.36 -6.96 8.77 -35.82 -0.31 -7.27 14 8 H 0.12 2.13 7.28 -52.49 -0.38 1.75 14 9 C 0.08 1.73 5.52 -104.65 -0.58 1.15 14 10 C -0.20 -4.18 7.95 -39.14 -0.31 -4.49 14 11 C -0.02 -0.47 9.44 -40.04 -0.38 -0.84 14 12 C -0.14 -3.39 6.88 -79.78 -0.55 -3.94 14 13 N 0.04 1.05 4.98 34.04 0.17 1.22 14 14 O -0.29 -7.71 19.07 -31.56 -0.60 -8.31 14 15 O -0.29 -7.65 19.07 -31.57 -0.60 -8.26 14 16 C 0.05 1.05 9.33 -39.38 -0.37 0.68 14 17 C -0.22 -4.68 6.39 -35.59 -0.23 -4.91 14 18 S -0.14 -2.56 24.61 -107.50 -2.65 -5.21 14 19 H 0.32 6.42 6.70 -40.82 -0.27 6.15 14 20 H 0.13 2.49 6.47 -52.49 -0.34 2.15 14 21 H 0.12 2.56 7.50 -52.49 -0.39 2.16 14 22 H 0.13 2.82 7.50 -52.49 -0.39 2.43 14 23 H 0.07 1.16 9.55 96.90 0.93 2.08 14 LS Contribution 235.87 15.07 3.55 3.55 Total: -1.00 -25.03 235.87 -7.00 -32.03 By element: Atomic # 1 Polarization: 7.04 SS G_CDS: 0.35 Total: 7.39 kcal Atomic # 6 Polarization: -16.58 SS G_CDS: -2.80 Total: -19.38 kcal Atomic # 7 Polarization: -12.43 SS G_CDS: 0.86 Total: -11.57 kcal Atomic # 8 Polarization: -15.37 SS G_CDS: -1.20 Total: -16.57 kcal Atomic # 14 Polarization: 14.87 SS G_CDS: -5.11 Total: 9.75 kcal Atomic # 16 Polarization: -2.56 SS G_CDS: -2.65 Total: -5.21 kcal Total LS contribution 3.55 Total: 3.55 kcal Total: -25.03 -7.00 -32.03 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238664430.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.498 kcal (2) G-P(sol) polarization free energy of solvation -25.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.030 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds