Wall clock time and date at job start Mon Mar 30 2020 02:37:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29490 * 1 3 3 Si 1.86797 * 119.99523 * 2 1 4 4 H 1.48501 * 109.47468 * 359.97438 * 3 2 1 5 5 H 1.48502 * 109.46986 * 120.00459 * 3 2 1 6 6 H 1.48507 * 109.46787 * 239.99582 * 3 2 1 7 7 C 1.46614 * 120.00042 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00021 * 155.36208 * 7 2 1 9 9 C 1.39270 * 120.00404 * 335.36805 * 7 2 1 10 10 C 1.41738 * 120.67569 * 334.94868 * 9 7 2 11 11 C 1.35746 * 119.85802 * 179.71795 * 10 9 7 12 12 C 1.39405 * 121.38351 * 0.56671 * 11 10 9 13 13 N 1.48009 * 119.28032 * 179.69009 * 12 11 10 14 14 O 1.31694 * 120.00041 * 180.02562 * 13 12 11 15 15 O 1.31697 * 119.99913 * 0.02562 * 13 12 11 16 16 C 1.37505 * 121.43815 * 359.71001 * 12 11 10 17 17 C 1.39492 * 120.00249 * 0.02562 * 16 12 11 18 18 S 1.76205 * 120.66344 * 180.02562 * 17 16 12 19 19 H 0.97005 * 120.00068 * 174.19943 * 1 2 3 20 20 H 1.08001 * 120.07227 * 359.97218 * 10 9 7 21 21 H 1.07994 * 119.31100 * 180.25969 * 11 10 9 22 22 H 1.08000 * 119.99759 * 180.02562 * 16 12 11 23 23 H 1.40999 * 99.99484 * 269.97640 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2949 0.0000 0.0000 3 14 2.2288 1.6178 0.0000 4 1 1.2637 2.7465 -0.0006 5 1 3.0826 1.6964 1.2125 6 1 3.0826 1.6964 -1.2125 7 6 2.0280 -1.2697 0.0006 8 1 3.0342 -1.3125 -0.3893 9 6 1.4268 -2.4208 0.5038 10 6 0.3880 -2.3333 1.4641 11 6 -0.1903 -3.4658 1.9391 12 6 0.2230 -4.7266 1.5112 13 7 -0.4354 -5.9309 2.0651 14 8 -0.0559 -7.1288 1.6712 15 8 -1.4009 -5.8044 2.9519 16 6 1.2292 -4.8757 0.5860 17 6 1.8607 -3.7510 0.0549 18 16 3.1517 -3.9218 -1.1321 19 1 -0.4850 -0.8358 -0.0849 20 1 0.0545 -1.3676 1.8141 21 1 -0.9839 -3.3888 2.6675 22 1 1.5307 -5.8636 0.2706 23 1 4.2675 -3.9869 -0.2725 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238664430.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:34 Heat of formation + Delta-G solvation = 2.637284 kcal Electronic energy + Delta-G solvation = -12724.890606 eV Core-core repulsion = 10246.000827 eV Total energy + Delta-G solvation = -2478.889780 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 225.025 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.33695 -38.72544 -36.36929 -34.89032 -32.46411 -32.02340 -28.87320 -25.78450 -23.75325 -22.93954 -20.60083 -19.49532 -18.63632 -17.70523 -17.09466 -16.52058 -16.45372 -15.65716 -15.28787 -14.80293 -14.69121 -13.72412 -13.45975 -12.99287 -12.66528 -12.33407 -11.92444 -11.87314 -11.76047 -11.63908 -11.54963 -11.36255 -10.43922 -10.21387 -9.84992 -8.97842 -7.30667 -1.29470 0.19806 0.57182 0.77268 1.06479 1.47969 1.51627 1.78537 1.84309 2.13920 2.20300 2.80049 3.68432 3.99875 4.16307 4.28149 4.60357 4.66830 4.75032 4.94996 5.15868 5.25037 5.38447 5.54857 5.87212 6.03418 6.35443 7.19557 Molecular weight = 225.02amu Principal moments of inertia in cm(-1) A = 0.032106 B = 0.009114 C = 0.007290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.910532 B = 3071.521441 C = 3839.917144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.693 5.693 2 C -0.007 4.007 3 Si 1.123 2.877 4 H -0.265 1.265 5 H -0.250 1.250 6 H -0.238 1.238 7 C -0.295 4.295 8 H 0.139 0.861 9 C 0.029 3.971 10 C -0.172 4.172 11 C -0.046 4.046 12 C -0.139 4.139 13 N 0.044 4.956 14 O -0.365 6.365 15 O -0.365 6.365 16 C 0.026 3.974 17 C -0.203 4.203 18 S -0.123 6.123 19 H 0.311 0.689 20 H 0.137 0.863 21 H 0.123 0.877 22 H 0.133 0.867 23 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.939 10.730 -4.130 13.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.309 5.309 2 C -0.239 4.239 3 Si 0.934 3.066 4 H -0.189 1.189 5 H -0.174 1.174 6 H -0.161 1.161 7 C -0.319 4.319 8 H 0.156 0.844 9 C 0.022 3.978 10 C -0.195 4.195 11 C -0.066 4.066 12 C -0.247 4.247 13 N 0.451 4.549 14 O -0.509 6.509 15 O -0.509 6.509 16 C 0.004 3.996 17 C -0.319 4.319 18 S 0.034 5.966 19 H 0.127 0.873 20 H 0.155 0.845 21 H 0.141 0.859 22 H 0.151 0.849 23 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 8.165 12.206 -4.897 15.480 hybrid contribution -0.742 -2.718 1.725 3.303 sum 7.424 9.488 -3.172 12.458 Atomic orbital electron populations 1.70058 1.09558 1.36309 1.14936 1.30915 0.95183 1.07557 0.90227 0.82949 0.75139 0.67549 0.80949 1.18943 1.17422 1.16074 1.23638 1.02051 0.92024 1.14159 0.84365 1.19177 0.93288 0.92089 0.93243 1.21011 1.00593 0.96959 1.00904 1.20117 0.98353 0.89747 0.98402 1.19835 1.08787 0.82466 1.13592 1.50159 1.00631 1.03821 1.00296 1.96053 1.73872 1.10421 1.70536 1.96051 1.26688 1.95170 1.32989 1.20990 0.90064 0.99295 0.89276 1.22298 1.07552 0.93046 1.08987 1.86260 1.02165 1.97006 1.11144 0.87278 0.84537 0.85877 0.84913 0.94061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.69 -23.94 12.32 23.23 0.29 -23.65 14 2 C -0.01 -0.21 5.13 87.23 0.45 0.24 14 3 Si 1.12 23.79 30.08 68.60 2.06 25.85 14 4 H -0.27 -5.95 7.11 99.48 0.71 -5.24 14 5 H -0.25 -4.99 7.11 99.48 0.71 -4.28 14 6 H -0.24 -4.38 7.11 99.48 0.71 -3.67 14 7 C -0.30 -9.86 8.77 24.71 0.22 -9.65 14 8 H 0.14 4.11 7.28 -2.91 -0.02 4.09 14 9 C 0.03 1.14 5.52 -19.88 -0.11 1.03 14 10 C -0.17 -6.87 7.95 22.56 0.18 -6.69 14 11 C -0.05 -2.06 9.44 21.97 0.21 -1.85 14 12 C -0.14 -6.79 6.88 36.49 0.25 -6.53 14 13 N 0.04 2.47 4.98 -46.21 -0.23 2.24 14 14 O -0.36 -20.93 19.07 3.53 0.07 -20.86 14 15 O -0.36 -21.02 19.07 3.52 0.07 -20.96 14 16 C 0.03 1.17 9.33 22.40 0.21 1.37 14 17 C -0.20 -8.07 6.39 24.85 0.16 -7.91 14 18 S -0.12 -4.00 24.61 -56.49 -1.39 -5.39 14 19 H 0.31 11.53 6.70 -92.70 -0.62 10.91 14 20 H 0.14 5.06 6.47 -2.91 -0.02 5.04 14 21 H 0.12 5.36 7.50 -2.91 -0.02 5.34 14 22 H 0.13 5.82 7.50 -2.91 -0.02 5.80 14 23 H 0.09 2.73 9.55 73.80 0.70 3.43 14 Total: -1.00 -55.88 235.87 4.55 -51.33 By element: Atomic # 1 Polarization: 19.30 SS G_CDS: 2.12 Total: 21.42 kcal Atomic # 6 Polarization: -31.55 SS G_CDS: 1.56 Total: -29.99 kcal Atomic # 7 Polarization: -21.46 SS G_CDS: 0.06 Total: -21.40 kcal Atomic # 8 Polarization: -41.95 SS G_CDS: 0.13 Total: -41.82 kcal Atomic # 14 Polarization: 23.79 SS G_CDS: 2.06 Total: 25.85 kcal Atomic # 16 Polarization: -4.00 SS G_CDS: -1.39 Total: -5.39 kcal Total: -55.88 4.55 -51.33 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238664430.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.972 kcal (2) G-P(sol) polarization free energy of solvation -55.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.335 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds