Wall clock time and date at job start Mon Mar 30 2020 02:37:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29485 * 1 3 3 Si 1.86802 * 120.00119 * 2 1 4 4 H 1.48502 * 109.46968 * 267.46305 * 3 2 1 5 5 H 1.48497 * 109.46908 * 27.46054 * 3 2 1 6 6 H 1.48497 * 109.46971 * 147.46684 * 3 2 1 7 7 C 1.46615 * 120.00032 * 179.97438 * 2 1 3 8 8 H 1.08011 * 119.99497 * 348.04909 * 7 2 1 9 9 C 1.39258 * 120.00326 * 167.77581 * 7 2 1 10 10 C 1.41732 * 120.67900 * 329.58170 * 9 7 2 11 11 C 1.35755 * 119.85945 * 179.73492 * 10 9 7 12 12 N 1.48015 * 119.30945 * 180.24395 * 11 10 9 13 13 O 1.31695 * 120.00212 * 180.28934 * 12 11 10 14 14 O 1.31699 * 119.99911 * 0.27918 * 12 11 10 15 15 C 1.39396 * 121.38344 * 0.52970 * 11 10 9 16 16 C 1.37502 * 121.44084 * 359.75887 * 15 11 10 17 17 C 1.39495 * 120.00323 * 359.96703 * 16 15 11 18 18 S 1.76201 * 120.66612 * 179.97438 * 17 16 15 19 19 H 0.97001 * 119.99906 * 0.02562 * 1 2 3 20 20 H 1.08000 * 120.07171 * 359.97438 * 10 9 7 21 21 H 1.07995 * 119.27987 * 179.72410 * 15 11 10 22 22 H 1.08000 * 120.00103 * 179.97438 * 16 15 11 23 23 H 1.40998 * 100.00200 * 264.82194 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2948 0.0000 0.0000 3 14 2.2289 1.6177 0.0000 4 1 2.5301 2.0154 -1.3987 5 1 1.4005 2.6675 0.6456 6 1 3.4986 1.4562 0.7529 7 6 2.0279 -1.2697 0.0006 8 1 1.5054 -2.1948 0.1947 9 6 3.3968 -1.2836 -0.2548 10 6 3.9843 -0.3112 -1.1023 11 6 5.3214 -0.3371 -1.3355 12 7 5.9229 0.6875 -2.2182 13 8 7.2177 0.6718 -2.4584 14 8 5.1632 1.6147 -2.7637 15 6 6.1389 -1.3118 -0.7657 16 6 5.6265 -2.2847 0.0599 17 6 4.2610 -2.3103 0.3440 18 16 3.5857 -3.5494 1.3991 19 1 -0.4850 0.8401 -0.0004 20 1 3.3700 0.4510 -1.5585 21 1 7.1978 -1.3031 -0.9779 22 1 6.2812 -3.0290 0.4885 23 1 3.1651 -4.4888 0.4356 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238666179.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:30 Heat of formation + Delta-G solvation = 26.690532 kcal Electronic energy + Delta-G solvation = -12942.686498 eV Core-core repulsion = 10464.839746 eV Total energy + Delta-G solvation = -2477.846752 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 225.025 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.74980 -38.90936 -35.98357 -35.60001 -33.00086 -32.51604 -27.69552 -27.31154 -23.71343 -22.78985 -20.30061 -19.34580 -18.73742 -18.69365 -17.18973 -17.03333 -16.43688 -16.09255 -15.38596 -14.81287 -14.32855 -13.98059 -13.31386 -13.07629 -12.95647 -12.57604 -12.45235 -12.28736 -11.96171 -11.93934 -11.79854 -11.34814 -10.16352 -10.05492 -9.41935 -8.77368 -6.88535 -1.77224 0.12545 0.17487 0.44654 1.07242 1.15696 1.20733 1.25987 1.84265 1.85665 2.13973 2.89566 3.69336 3.98709 4.12783 4.23194 4.33614 4.72647 4.81159 4.98331 5.18941 5.35029 5.61167 5.70664 5.79858 6.11738 6.24925 7.57303 Molecular weight = 225.02amu Principal moments of inertia in cm(-1) A = 0.019984 B = 0.015375 C = 0.009130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.793828 B = 1820.652429 C = 3065.911233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.749 5.749 2 C 0.063 3.937 3 Si 0.936 3.064 4 H -0.253 1.253 5 H -0.247 1.247 6 H -0.260 1.260 7 C -0.392 4.392 8 H 0.102 0.898 9 C 0.086 3.914 10 C -0.201 4.201 11 C 0.060 3.940 12 N -0.017 5.017 13 O -0.160 6.160 14 O -0.241 6.241 15 C -0.229 4.229 16 C 0.005 3.995 17 C -0.218 4.218 18 S -0.132 6.132 19 H 0.319 0.681 20 H 0.126 0.874 21 H 0.150 0.850 22 H 0.167 0.833 23 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.358 -2.045 2.147 4.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.367 5.367 2 C -0.168 4.168 3 Si 0.758 3.242 4 H -0.178 1.178 5 H -0.172 1.172 6 H -0.184 1.184 7 C -0.415 4.415 8 H 0.120 0.880 9 C 0.079 3.921 10 C -0.222 4.222 11 C -0.025 4.025 12 N 0.458 4.542 13 O -0.364 6.364 14 O -0.421 6.421 15 C -0.252 4.252 16 C -0.016 4.016 17 C -0.332 4.332 18 S 0.026 5.974 19 H 0.133 0.867 20 H 0.143 0.857 21 H 0.167 0.833 22 H 0.185 0.815 23 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 2.330 -2.878 3.274 4.943 hybrid contribution 0.221 1.256 -1.858 2.254 sum 2.551 -1.622 1.416 3.338 Atomic orbital electron populations 1.68874 1.09492 1.34243 1.24133 1.28180 0.95232 1.03471 0.89952 0.85940 0.79981 0.77301 0.80931 1.17814 1.17178 1.18372 1.20859 0.91037 0.95311 1.34337 0.87970 1.18654 0.92983 0.90342 0.90124 1.20979 0.92681 1.04460 1.04120 1.20303 0.93717 0.91316 0.97158 1.51128 1.02411 1.01737 0.98941 1.96132 0.92487 1.81467 1.66305 1.96228 1.58971 1.31599 1.55289 1.20323 1.00288 0.97972 1.06582 1.21323 0.93274 0.95286 0.91722 1.22789 0.95154 1.05197 1.10057 1.86150 1.80183 1.18749 1.12347 0.86718 0.85691 0.83269 0.81545 0.95239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -32.72 13.89 23.23 0.32 -32.40 14 2 C 0.06 2.80 5.64 87.23 0.49 3.29 14 3 Si 0.94 37.72 24.57 68.60 1.69 39.41 14 4 H -0.25 -10.57 6.49 99.48 0.65 -9.92 14 5 H -0.25 -8.83 7.11 99.48 0.71 -8.12 14 6 H -0.26 -11.20 6.94 99.48 0.69 -10.51 14 7 C -0.39 -18.17 9.30 24.70 0.23 -17.94 14 8 H 0.10 4.90 7.48 -2.91 -0.02 4.87 14 9 C 0.09 3.88 5.37 -19.89 -0.11 3.77 14 10 C -0.20 -9.16 6.73 22.56 0.15 -9.01 14 11 C 0.06 2.62 6.82 36.08 0.25 2.87 14 12 N -0.02 -0.76 4.98 -47.17 -0.24 -1.00 14 13 O -0.16 -6.72 19.07 3.52 0.07 -6.66 14 14 O -0.24 -11.44 19.05 3.52 0.07 -11.37 14 15 C -0.23 -8.56 9.51 22.37 0.21 -8.35 14 16 C 0.01 0.18 9.82 22.40 0.22 0.40 14 17 C -0.22 -8.66 6.39 24.86 0.16 -8.50 14 18 S -0.13 -4.61 24.70 -56.49 -1.40 -6.01 14 19 H 0.32 12.15 8.27 -92.71 -0.77 11.38 14 20 H 0.13 5.87 3.72 -2.91 -0.01 5.86 14 21 H 0.15 4.89 7.50 -2.91 -0.02 4.86 14 22 H 0.17 4.44 8.06 -2.91 -0.02 4.42 14 23 H 0.08 2.71 9.55 73.80 0.70 3.42 14 Total: -1.00 -49.24 230.96 4.02 -45.22 By element: Atomic # 1 Polarization: 4.36 SS G_CDS: 1.90 Total: 6.26 kcal Atomic # 6 Polarization: -35.06 SS G_CDS: 1.60 Total: -33.46 kcal Atomic # 7 Polarization: -33.48 SS G_CDS: 0.09 Total: -33.40 kcal Atomic # 8 Polarization: -18.16 SS G_CDS: 0.13 Total: -18.03 kcal Atomic # 14 Polarization: 37.72 SS G_CDS: 1.69 Total: 39.41 kcal Atomic # 16 Polarization: -4.61 SS G_CDS: -1.40 Total: -6.01 kcal Total: -49.24 4.02 -45.22 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238666179.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.906 kcal (2) G-P(sol) polarization free energy of solvation -49.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.216 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds