Wall clock time and date at job start Mon Mar 30 2020 02:50:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31533 * 1 3 3 Si 1.86806 * 119.99761 * 2 1 4 4 H 1.48498 * 109.46995 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47069 * 299.99893 * 3 2 1 6 6 H 1.48495 * 109.47181 * 60.00081 * 3 2 1 7 7 C 1.38868 * 120.00056 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99456 * 179.97438 * 7 2 1 9 9 N 1.36758 * 119.99855 * 359.97438 * 7 2 1 10 10 C 1.38648 * 119.99618 * 174.38470 * 9 7 2 11 11 C 1.39307 * 120.20241 * 277.11079 * 10 9 7 12 12 F 1.35101 * 119.99519 * 359.97438 * 11 10 9 13 13 C 1.38104 * 120.00702 * 179.97438 * 11 10 9 14 14 C 1.38650 * 120.42544 * 0.04392 * 13 11 10 15 15 C 1.37762 * 120.40226 * 359.69693 * 14 13 11 16 16 C 1.39773 * 119.98212 * 0.53884 * 15 14 13 17 17 C 1.47296 * 120.20879 * 179.76841 * 16 15 14 18 18 O 1.21526 * 120.00294 * 185.45263 * 17 16 15 19 19 O 1.34786 * 120.00283 * 5.17075 * 17 16 15 20 20 H 0.96998 * 119.99704 * 0.02562 * 1 2 3 21 21 H 0.97000 * 120.00657 * 354.38914 * 9 7 2 22 22 H 1.08003 * 119.78745 * 180.02562 * 13 11 10 23 23 H 1.07998 * 119.79293 * 179.97438 * 14 13 11 24 24 H 1.08006 * 120.00647 * 180.28210 * 15 14 13 25 25 H 0.96695 * 116.99638 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3153 0.0000 0.0000 3 14 2.2493 1.6178 0.0000 4 1 3.7093 1.3465 -0.0006 5 1 1.8905 2.3965 -1.2125 6 1 1.8905 2.3965 1.2125 7 6 2.0097 -1.2026 0.0005 8 1 3.0897 -1.2025 0.0001 9 7 1.3259 -2.3870 0.0016 10 6 2.0141 -3.5849 -0.1154 11 6 2.3891 -4.0580 -1.3708 12 9 2.0816 -3.3492 -2.4792 13 6 3.0750 -5.2514 -1.4826 14 6 3.3943 -5.9864 -0.3511 15 6 3.0366 -5.5321 0.8992 16 6 2.3377 -4.3289 1.0317 17 6 1.9483 -3.8410 2.3658 18 8 1.2561 -2.8477 2.4714 19 8 2.3549 -4.4993 3.4694 20 1 -0.4849 0.8401 -0.0004 21 1 0.3594 -2.3890 0.0841 22 1 3.3643 -5.6147 -2.4577 23 1 3.9306 -6.9186 -0.4504 24 1 3.2925 -6.1075 1.7767 25 1 2.0739 -4.1414 4.3226 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238675872.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:01 Heat of formation + Delta-G solvation = -88.179170 kcal Electronic energy + Delta-G solvation = -15198.254989 eV Core-core repulsion = 12285.047031 eV Total energy + Delta-G solvation = -2913.207958 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 225.059 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -48.00235 -39.64678 -37.83694 -35.48309 -34.60528 -31.64755 -30.41309 -28.26251 -24.62839 -23.62796 -21.44324 -20.54643 -17.68899 -17.58953 -16.87032 -16.17060 -15.50400 -15.01606 -14.92095 -14.59442 -14.46018 -13.74906 -13.43663 -13.00669 -12.38389 -11.65823 -11.64255 -11.39492 -11.02918 -11.00268 -10.80711 -10.32244 -10.14740 -9.78360 -9.21887 -8.44143 -8.04328 -7.34999 -6.10867 -3.30693 1.20208 1.79000 3.21544 3.31978 3.36040 3.39027 3.63371 4.23063 4.38411 4.92588 5.23940 5.29109 5.36350 5.57603 5.70955 5.91748 6.29681 6.55642 6.60964 6.76948 6.93843 7.11428 7.32456 7.54296 8.11437 8.67064 9.15948 9.78495 9.96055 11.08054 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.025463 B = 0.011538 C = 0.008787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.368104 B = 2426.148061 C = 3185.724567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.005 3.995 3 Si 0.920 3.080 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.235 4.235 8 H 0.079 0.921 9 N -0.634 5.634 10 C 0.214 3.786 11 C 0.063 3.937 12 F -0.133 7.133 13 C -0.125 4.125 14 C -0.153 4.153 15 C -0.064 4.064 16 C -0.150 4.150 17 C 0.508 3.492 18 O -0.470 6.470 19 O -0.531 6.531 20 H 0.264 0.736 21 H 0.400 0.600 22 H 0.126 0.874 23 H 0.125 0.875 24 H 0.129 0.871 25 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.537 -10.437 1.730 11.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.195 4.195 3 Si 0.749 3.251 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.364 4.364 8 H 0.097 0.903 9 N -0.263 5.263 10 C 0.107 3.893 11 C 0.040 3.960 12 F -0.111 7.111 13 C -0.146 4.146 14 C -0.173 4.173 15 C -0.083 4.083 16 C -0.156 4.156 17 C 0.351 3.649 18 O -0.355 6.355 19 O -0.343 6.343 20 H 0.074 0.926 21 H 0.239 0.761 22 H 0.144 0.856 23 H 0.143 0.857 24 H 0.147 0.853 25 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges 5.419 -9.926 1.323 11.386 hybrid contribution -0.132 1.206 0.360 1.265 sum 5.287 -8.720 1.683 10.336 Atomic orbital electron populations 1.69653 1.05601 1.26903 1.51732 1.24981 0.95641 0.98596 1.00309 0.85937 0.79090 0.82560 0.77553 1.19916 1.21118 1.21138 1.19317 0.91271 0.82693 1.43076 0.90288 1.39776 1.07129 0.99244 1.80151 1.17475 0.93765 0.88611 0.89484 1.18498 1.02742 0.91508 0.83257 1.91471 1.91297 1.78055 1.50292 1.21122 0.99061 0.94522 0.99866 1.20573 1.04371 1.00797 0.91543 1.21216 0.94983 0.94453 0.97689 1.19415 1.06649 0.99833 0.89751 1.20682 0.78280 0.81482 0.84461 1.91049 1.34086 1.23645 1.86728 1.84554 1.74105 1.58069 1.17581 0.92555 0.76090 0.85602 0.85703 0.85330 0.74029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.73 13.06 55.49 0.72 -26.00 15 2 C 0.00 0.14 5.50 -17.45 -0.10 0.04 15 3 Si 0.92 22.16 29.55 -169.99 -5.02 17.13 15 4 H -0.27 -6.42 7.11 56.52 0.40 -6.02 15 5 H -0.28 -6.78 7.11 56.52 0.40 -6.38 15 6 H -0.28 -6.86 7.11 56.52 0.40 -6.46 15 7 C -0.24 -6.65 9.65 -15.12 -0.15 -6.79 15 8 H 0.08 2.20 7.83 -52.49 -0.41 1.79 15 9 N -0.63 -16.81 3.15 -9.36 -0.03 -16.84 15 10 C 0.21 4.84 5.87 -83.53 -0.49 4.35 15 11 C 0.06 1.28 7.31 -39.23 -0.29 1.00 15 12 F -0.13 -2.95 17.08 2.25 0.04 -2.91 15 13 C -0.13 -2.00 10.00 -39.48 -0.39 -2.39 15 14 C -0.15 -2.16 10.02 -39.60 -0.40 -2.56 15 15 C -0.06 -1.01 9.61 -39.18 -0.38 -1.39 15 16 C -0.15 -2.97 5.89 -104.79 -0.62 -3.59 15 17 C 0.51 10.26 8.25 34.41 0.28 10.55 15 18 O -0.47 -11.55 15.63 -19.29 -0.30 -11.85 15 19 O -0.53 -8.07 12.69 -40.73 -0.52 -8.59 15 20 H 0.26 7.48 8.31 -40.82 -0.34 7.14 15 21 H 0.40 11.31 8.00 -40.82 -0.33 10.99 15 22 H 0.13 1.65 8.06 -52.48 -0.42 1.23 15 23 H 0.13 1.32 8.06 -52.49 -0.42 0.89 15 24 H 0.13 1.70 7.62 -52.48 -0.40 1.30 15 25 H 0.40 4.35 9.11 45.56 0.42 4.77 15 LS Contribution 241.57 15.07 3.64 3.64 Total: -1.00 -32.27 241.57 -4.69 -36.96 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: -0.70 Total: 9.25 kcal Atomic # 6 Polarization: 1.74 SS G_CDS: -2.52 Total: -0.78 kcal Atomic # 7 Polarization: -43.54 SS G_CDS: 0.70 Total: -42.84 kcal Atomic # 8 Polarization: -19.62 SS G_CDS: -0.82 Total: -20.44 kcal Atomic # 9 Polarization: -2.95 SS G_CDS: 0.04 Total: -2.91 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -32.27 -4.69 -36.96 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238675872.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.221 kcal (2) G-P(sol) polarization free energy of solvation -32.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds