Wall clock time and date at job start Mon Mar 30 2020 02:50:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31533 * 1 3 3 Si 1.86806 * 119.99761 * 2 1 4 4 H 1.48498 * 109.46995 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47069 * 299.99893 * 3 2 1 6 6 H 1.48495 * 109.47181 * 60.00081 * 3 2 1 7 7 C 1.38868 * 120.00056 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99456 * 179.97438 * 7 2 1 9 9 N 1.36758 * 119.99855 * 359.97438 * 7 2 1 10 10 C 1.38648 * 119.99618 * 174.38470 * 9 7 2 11 11 C 1.39307 * 120.20241 * 277.11079 * 10 9 7 12 12 F 1.35101 * 119.99519 * 359.97438 * 11 10 9 13 13 C 1.38104 * 120.00702 * 179.97438 * 11 10 9 14 14 C 1.38650 * 120.42544 * 0.04392 * 13 11 10 15 15 C 1.37762 * 120.40226 * 359.69693 * 14 13 11 16 16 C 1.39773 * 119.98212 * 0.53884 * 15 14 13 17 17 C 1.47296 * 120.20879 * 179.76841 * 16 15 14 18 18 O 1.21526 * 120.00294 * 185.45263 * 17 16 15 19 19 O 1.34786 * 120.00283 * 5.17075 * 17 16 15 20 20 H 0.96998 * 119.99704 * 0.02562 * 1 2 3 21 21 H 0.97000 * 120.00657 * 354.38914 * 9 7 2 22 22 H 1.08003 * 119.78745 * 180.02562 * 13 11 10 23 23 H 1.07998 * 119.79293 * 179.97438 * 14 13 11 24 24 H 1.08006 * 120.00647 * 180.28210 * 15 14 13 25 25 H 0.96695 * 116.99638 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3153 0.0000 0.0000 3 14 2.2493 1.6178 0.0000 4 1 3.7093 1.3465 -0.0006 5 1 1.8905 2.3965 -1.2125 6 1 1.8905 2.3965 1.2125 7 6 2.0097 -1.2026 0.0005 8 1 3.0897 -1.2025 0.0001 9 7 1.3259 -2.3870 0.0016 10 6 2.0141 -3.5849 -0.1154 11 6 2.3891 -4.0580 -1.3708 12 9 2.0816 -3.3492 -2.4792 13 6 3.0750 -5.2514 -1.4826 14 6 3.3943 -5.9864 -0.3511 15 6 3.0366 -5.5321 0.8992 16 6 2.3377 -4.3289 1.0317 17 6 1.9483 -3.8410 2.3658 18 8 1.2561 -2.8477 2.4714 19 8 2.3549 -4.4993 3.4694 20 1 -0.4849 0.8401 -0.0004 21 1 0.3594 -2.3890 0.0841 22 1 3.3643 -5.6147 -2.4577 23 1 3.9306 -6.9186 -0.4504 24 1 3.2925 -6.1075 1.7767 25 1 2.0739 -4.1414 4.3226 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238675872.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:00 Heat of formation + Delta-G solvation = -112.076142 kcal Electronic energy + Delta-G solvation = -15199.291240 eV Core-core repulsion = 12285.047031 eV Total energy + Delta-G solvation = -2914.244209 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 225.059 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -49.63953 -41.24118 -39.37512 -37.05774 -36.30828 -33.46815 -31.93297 -29.90779 -26.42328 -25.27604 -22.98751 -22.03361 -19.57609 -19.17108 -18.41899 -17.76463 -17.02703 -16.62014 -16.55393 -16.22692 -16.18181 -15.45342 -15.15829 -14.51613 -13.94777 -13.35301 -13.07609 -12.97218 -12.80674 -12.65258 -12.35315 -12.26170 -12.01063 -11.53386 -11.08014 -9.93251 -9.58180 -9.24539 -8.07004 -5.41539 -0.26425 0.32029 1.39060 1.42297 1.51528 1.69447 2.17280 2.44786 2.78900 3.28740 3.42691 3.71424 4.02803 4.14422 4.35005 4.46331 4.81725 5.12043 5.25307 5.35247 5.38201 5.45123 5.74346 5.92023 6.18975 7.15640 7.19583 7.91392 8.03875 9.15424 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.025463 B = 0.011538 C = 0.008787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.368104 B = 2426.148061 C = 3185.724567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C -0.059 4.059 3 Si 0.979 3.021 4 H -0.265 1.265 5 H -0.284 1.284 6 H -0.288 1.288 7 C -0.244 4.244 8 H 0.068 0.932 9 N -0.672 5.672 10 C 0.189 3.811 11 C 0.030 3.970 12 F -0.151 7.151 13 C -0.102 4.102 14 C -0.111 4.111 15 C -0.054 4.054 16 C -0.156 4.156 17 C 0.514 3.486 18 O -0.519 6.519 19 O -0.506 6.506 20 H 0.256 0.744 21 H 0.383 0.617 22 H 0.167 0.833 23 H 0.187 0.813 24 H 0.169 0.831 25 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.461 -14.589 2.025 16.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.604 5.604 2 C -0.253 4.253 3 Si 0.806 3.194 4 H -0.190 1.190 5 H -0.210 1.210 6 H -0.215 1.215 7 C -0.374 4.374 8 H 0.086 0.914 9 N -0.306 5.306 10 C 0.089 3.911 11 C 0.008 3.992 12 F -0.130 7.130 13 C -0.121 4.121 14 C -0.129 4.129 15 C -0.073 4.073 16 C -0.161 4.161 17 C 0.358 3.642 18 O -0.408 6.408 19 O -0.320 6.320 20 H 0.065 0.935 21 H 0.218 0.782 22 H 0.184 0.816 23 H 0.205 0.795 24 H 0.186 0.814 25 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges 8.459 -14.230 1.633 16.635 hybrid contribution -0.758 1.808 0.410 2.003 sum 7.701 -12.422 2.043 14.757 Atomic orbital electron populations 1.69797 1.06864 1.26541 1.57164 1.25676 0.96444 1.01423 1.01735 0.85024 0.78189 0.79061 0.77115 1.18966 1.21027 1.21512 1.19280 0.90641 0.84075 1.43365 0.91362 1.39497 1.06107 0.99938 1.85072 1.18100 0.93671 0.88246 0.91121 1.18936 1.04539 0.93450 0.82254 1.91425 1.91763 1.78924 1.50906 1.21693 0.96050 0.91545 1.02805 1.21369 1.00517 1.01391 0.89610 1.21733 0.92850 0.92396 1.00279 1.19823 1.06838 1.00225 0.89165 1.20904 0.76980 0.80543 0.85759 1.91069 1.36212 1.25928 1.87579 1.84473 1.72911 1.56819 1.17765 0.93510 0.78183 0.81571 0.79538 0.81387 0.71371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -61.66 13.06 21.66 0.28 -61.38 15 2 C -0.06 -3.60 5.50 84.89 0.47 -3.13 15 3 Si 0.98 48.44 29.55 68.60 2.03 50.46 15 4 H -0.27 -12.38 7.11 99.48 0.71 -11.67 15 5 H -0.28 -13.72 7.11 99.48 0.71 -13.01 15 6 H -0.29 -14.13 7.11 99.48 0.71 -13.43 15 7 C -0.24 -14.65 9.65 84.08 0.81 -13.84 15 8 H 0.07 4.03 7.83 -2.91 -0.02 4.00 15 9 N -0.67 -37.72 3.15 -183.53 -0.58 -38.30 15 10 C 0.19 8.56 5.87 38.87 0.23 8.79 15 11 C 0.03 1.20 7.31 22.50 0.16 1.36 15 12 F -0.15 -6.82 17.08 44.97 0.77 -6.05 15 13 C -0.10 -2.66 10.00 22.34 0.22 -2.44 15 14 C -0.11 -2.24 10.02 22.26 0.22 -2.01 15 15 C -0.05 -1.35 9.61 22.53 0.22 -1.13 15 16 C -0.16 -5.82 5.89 -19.97 -0.12 -5.94 15 17 C 0.51 20.12 8.25 70.20 0.58 20.70 15 18 O -0.52 -26.27 15.63 19.75 0.31 -25.96 15 19 O -0.51 -13.57 12.69 -56.97 -0.72 -14.29 15 20 H 0.26 15.75 8.31 -92.71 -0.77 14.98 15 21 H 0.38 23.44 8.00 -92.71 -0.74 22.70 15 22 H 0.17 3.16 8.06 -2.91 -0.02 3.14 15 23 H 0.19 1.83 8.06 -2.91 -0.02 1.80 15 24 H 0.17 3.05 7.62 -2.91 -0.02 3.03 15 25 H 0.43 7.84 9.11 -74.06 -0.67 7.16 15 Total: -1.00 -79.18 241.57 4.72 -74.46 By element: Atomic # 1 Polarization: 18.86 SS G_CDS: -0.16 Total: 18.71 kcal Atomic # 6 Polarization: -0.44 SS G_CDS: 2.80 Total: 2.36 kcal Atomic # 7 Polarization: -99.38 SS G_CDS: -0.30 Total: -99.68 kcal Atomic # 8 Polarization: -39.84 SS G_CDS: -0.41 Total: -40.25 kcal Atomic # 9 Polarization: -6.82 SS G_CDS: 0.77 Total: -6.05 kcal Atomic # 14 Polarization: 48.44 SS G_CDS: 2.03 Total: 50.46 kcal Total: -79.18 4.72 -74.46 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238675872.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.619 kcal (2) G-P(sol) polarization free energy of solvation -79.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds