Wall clock time and date at job start Mon Mar 30 2020 03:09:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 N 1.41600 * 114.00414 * 2 1 4 4 C 1.30015 * 120.00483 * 180.02562 * 3 2 1 5 5 C 1.50701 * 119.99717 * 359.97438 * 4 3 2 6 6 C 1.46225 * 120.00200 * 179.97438 * 4 3 2 7 7 C 1.37742 * 125.08777 * 0.02562 * 6 4 3 8 8 C 1.35683 * 114.86698 * 179.97438 * 7 6 4 9 9 C 1.38794 * 114.54802 * 359.97438 * 8 7 6 10 10 C 1.39461 * 125.22565 * 179.97438 * 9 8 7 11 11 H 1.08000 * 120.00345 * 353.34228 * 10 9 8 12 12 C 1.40283 * 119.99955 * 173.33597 * 10 9 8 13 13 N 1.30720 * 119.99717 * 6.54410 * 12 10 9 14 14 Si 1.86803 * 120.00247 * 186.54739 * 12 10 9 15 15 H 1.48499 * 109.46975 * 94.98600 * 14 12 10 16 16 H 1.48499 * 109.46997 * 214.98845 * 14 12 10 17 17 H 1.48502 * 109.46534 * 334.98410 * 14 12 10 18 18 S 1.75804 * 125.08957 * 179.97438 * 6 4 3 19 19 H 1.09001 * 109.46490 * 60.00059 * 1 2 3 20 20 H 1.09000 * 109.47117 * 179.97438 * 1 2 3 21 21 H 1.08995 * 109.46709 * 300.00280 * 1 2 3 22 22 H 1.08997 * 109.47222 * 270.00041 * 5 4 3 23 23 H 1.08996 * 109.46829 * 30.00368 * 5 4 3 24 24 H 1.09001 * 109.47038 * 149.99964 * 5 4 3 25 25 H 1.08001 * 122.56545 * 359.97438 * 7 6 4 26 26 H 1.08002 * 122.72635 * 179.72895 * 8 7 6 27 27 H 0.97007 * 119.99613 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0050 1.2935 0.0000 4 6 3.2981 1.4295 -0.0005 5 6 4.1838 0.2102 -0.0005 6 6 3.8928 2.7653 -0.0011 7 6 3.1853 3.9471 -0.0006 8 6 3.9483 5.0690 -0.0007 9 6 5.3166 4.8357 -0.0007 10 6 6.3010 5.8236 -0.0014 11 1 6.0241 6.8618 -0.1103 12 6 7.6508 5.4688 0.1397 13 7 7.9984 4.2086 0.1431 14 14 8.9516 6.7969 0.3227 15 1 9.2275 7.0243 1.7640 16 1 10.1988 6.3654 -0.3581 17 1 8.4623 8.0568 -0.2926 18 16 5.6181 3.1034 -0.0011 19 1 -0.3632 0.5138 -0.8900 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3632 0.5139 0.8899 22 1 4.3977 -0.0835 1.0271 23 1 3.6772 -0.6069 -0.5140 24 1 5.1172 0.4392 -0.5147 25 1 2.1057 3.9782 -0.0002 26 1 3.5255 6.0627 -0.0047 27 1 8.9318 3.9632 0.2410 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000254627364.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:11 Heat of formation + Delta-G solvation = 10.675681 kcal Electronic energy + Delta-G solvation = -12668.904774 eV Core-core repulsion = 10326.196660 eV Total energy + Delta-G solvation = -2342.708114 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.056 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -36.90241 -35.93481 -34.53990 -33.25503 -29.01772 -27.86916 -26.00465 -24.75665 -22.37740 -19.46669 -18.44460 -17.43511 -15.68825 -15.24427 -14.61511 -14.58796 -14.39227 -13.54359 -13.03571 -12.67970 -12.34142 -12.22981 -11.93003 -11.56494 -11.33399 -11.21962 -10.79510 -10.72077 -10.54201 -10.02304 -9.79259 -9.09642 -8.82264 -8.79655 -7.27518 -7.25029 -6.86697 -4.67929 2.04462 2.77463 2.81949 2.87902 3.27584 3.40517 3.54668 3.81973 4.15813 4.23300 4.88097 5.58334 5.78231 5.78571 5.88276 5.98673 6.13085 6.31863 6.54406 6.67492 6.84325 7.02129 7.32948 7.40165 7.64568 7.83445 7.94837 8.30579 8.36491 8.67717 9.56370 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.070069 B = 0.006523 C = 0.005999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 399.511738 B = 4291.415667 C = 4666.214477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 O -0.272 6.272 3 N -0.409 5.409 4 C 0.250 3.750 5 C -0.143 4.143 6 C -0.389 4.389 7 C -0.005 4.005 8 C -0.342 4.342 9 C 0.038 3.962 10 C -0.361 4.361 11 H 0.101 0.899 12 C 0.048 3.952 13 N -0.762 5.762 14 Si 0.939 3.061 15 H -0.263 1.263 16 H -0.270 1.270 17 H -0.256 1.256 18 S 0.162 5.838 19 H 0.038 0.962 20 H 0.079 0.921 21 H 0.038 0.962 22 H 0.073 0.927 23 H 0.067 0.933 24 H 0.073 0.927 25 H 0.103 0.897 26 H 0.105 0.895 27 H 0.302 0.698 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.016 -1.766 0.168 1.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 O -0.281 6.281 3 N -0.168 5.168 4 C 0.070 3.930 5 C -0.202 4.202 6 C -0.508 4.508 7 C -0.037 4.037 8 C -0.366 4.366 9 C -0.084 4.084 10 C -0.398 4.398 11 H 0.118 0.882 12 C -0.176 4.176 13 N -0.388 5.388 14 Si 0.762 3.238 15 H -0.188 1.188 16 H -0.195 1.195 17 H -0.179 1.179 18 S 0.422 5.578 19 H 0.056 0.944 20 H 0.097 0.903 21 H 0.056 0.944 22 H 0.092 0.908 23 H 0.086 0.914 24 H 0.092 0.908 25 H 0.121 0.879 26 H 0.123 0.877 27 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 0.566 -2.759 0.173 2.821 hybrid contribution -0.463 0.911 0.119 1.029 sum 0.103 -1.848 0.292 1.873 Atomic orbital electron populations 1.22384 0.80948 1.00627 1.00109 1.89614 1.20057 1.23757 1.94654 1.77381 1.12057 0.99661 1.27681 1.22208 0.89509 0.93220 0.88087 1.21211 1.00006 0.96310 1.02690 1.22409 1.00261 0.91637 1.36447 1.19876 0.98088 0.91314 0.94437 1.19748 0.92003 0.97556 1.27297 1.22099 0.95428 0.96063 0.94820 1.19388 0.89767 0.95498 1.35115 0.88155 1.26377 1.00857 0.97273 0.93096 1.68809 1.21392 1.17848 1.30742 0.85731 0.78224 0.80093 0.79786 1.18791 1.19503 1.17916 1.84305 0.97389 1.00540 1.75609 0.94375 0.90279 0.94358 0.90825 0.91424 0.90809 0.87946 0.87653 0.88473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.90 11.47 101.05 1.16 2.06 15 2 O -0.27 -5.65 10.53 -11.47 -0.12 -5.77 15 3 N -0.41 -9.49 10.99 34.87 0.38 -9.10 15 4 C 0.25 5.78 7.11 -80.15 -0.57 5.21 15 5 C -0.14 -2.79 9.52 36.01 0.34 -2.44 15 6 C -0.39 -9.55 6.42 -36.56 -0.23 -9.79 15 7 C -0.01 -0.13 9.84 -40.68 -0.40 -0.53 15 8 C -0.34 -8.48 10.15 -40.29 -0.41 -8.89 15 9 C 0.04 0.97 6.17 -38.92 -0.24 0.73 15 10 C -0.36 -8.56 9.27 -38.36 -0.36 -8.92 15 11 H 0.10 2.22 7.86 -52.49 -0.41 1.81 15 12 C 0.05 1.04 5.49 -17.26 -0.09 0.94 15 13 N -0.76 -17.06 10.66 55.57 0.59 -16.46 15 14 Si 0.94 16.13 29.57 -169.99 -5.03 11.11 15 15 H -0.26 -4.50 7.11 56.52 0.40 -4.10 15 16 H -0.27 -4.53 7.11 56.52 0.40 -4.13 15 17 H -0.26 -4.34 7.11 56.52 0.40 -3.94 15 18 S 0.16 3.93 19.15 -107.50 -2.06 1.87 15 19 H 0.04 0.59 8.14 -51.93 -0.42 0.16 15 20 H 0.08 0.98 8.14 -51.93 -0.42 0.56 15 21 H 0.04 0.59 8.14 -51.93 -0.42 0.17 15 22 H 0.07 1.34 8.14 -51.93 -0.42 0.92 15 23 H 0.07 1.25 7.36 -51.93 -0.38 0.87 15 24 H 0.07 1.39 7.36 -51.93 -0.38 1.00 15 25 H 0.10 2.43 7.99 -52.49 -0.42 2.01 15 26 H 0.11 2.44 8.06 -52.49 -0.42 2.02 15 27 H 0.30 5.99 8.29 -40.82 -0.34 5.66 15 LS Contribution 257.14 15.07 3.88 3.88 Total: -1.00 -27.10 257.14 -6.00 -33.10 By element: Atomic # 1 Polarization: 5.86 SS G_CDS: -2.84 Total: 3.01 kcal Atomic # 6 Polarization: -20.82 SS G_CDS: -0.80 Total: -21.63 kcal Atomic # 7 Polarization: -26.55 SS G_CDS: 0.98 Total: -25.57 kcal Atomic # 8 Polarization: -5.65 SS G_CDS: -0.12 Total: -5.77 kcal Atomic # 14 Polarization: 16.13 SS G_CDS: -5.03 Total: 11.11 kcal Atomic # 16 Polarization: 3.93 SS G_CDS: -2.06 Total: 1.87 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -27.10 -6.00 -33.10 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000254627364.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.779 kcal (2) G-P(sol) polarization free energy of solvation -27.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.103 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds