Wall clock time and date at job start Mon Mar 30 2020 03:09:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 N 1.41600 * 114.00414 * 2 1 4 4 C 1.30015 * 120.00483 * 180.02562 * 3 2 1 5 5 C 1.50701 * 119.99717 * 359.97438 * 4 3 2 6 6 C 1.46225 * 120.00200 * 179.97438 * 4 3 2 7 7 C 1.37742 * 125.08777 * 0.02562 * 6 4 3 8 8 C 1.35683 * 114.86698 * 179.97438 * 7 6 4 9 9 C 1.38794 * 114.54802 * 359.97438 * 8 7 6 10 10 C 1.39461 * 125.22565 * 179.97438 * 9 8 7 11 11 H 1.08000 * 120.00345 * 353.34228 * 10 9 8 12 12 C 1.40283 * 119.99955 * 173.33597 * 10 9 8 13 13 N 1.30720 * 119.99717 * 6.54410 * 12 10 9 14 14 Si 1.86803 * 120.00247 * 186.54739 * 12 10 9 15 15 H 1.48499 * 109.46975 * 94.98600 * 14 12 10 16 16 H 1.48499 * 109.46997 * 214.98845 * 14 12 10 17 17 H 1.48502 * 109.46534 * 334.98410 * 14 12 10 18 18 S 1.75804 * 125.08957 * 179.97438 * 6 4 3 19 19 H 1.09001 * 109.46490 * 60.00059 * 1 2 3 20 20 H 1.09000 * 109.47117 * 179.97438 * 1 2 3 21 21 H 1.08995 * 109.46709 * 300.00280 * 1 2 3 22 22 H 1.08997 * 109.47222 * 270.00041 * 5 4 3 23 23 H 1.08996 * 109.46829 * 30.00368 * 5 4 3 24 24 H 1.09001 * 109.47038 * 149.99964 * 5 4 3 25 25 H 1.08001 * 122.56545 * 359.97438 * 7 6 4 26 26 H 1.08002 * 122.72635 * 179.72895 * 8 7 6 27 27 H 0.97007 * 119.99613 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0050 1.2935 0.0000 4 6 3.2981 1.4295 -0.0005 5 6 4.1838 0.2102 -0.0005 6 6 3.8928 2.7653 -0.0011 7 6 3.1853 3.9471 -0.0006 8 6 3.9483 5.0690 -0.0007 9 6 5.3166 4.8357 -0.0007 10 6 6.3010 5.8236 -0.0014 11 1 6.0241 6.8618 -0.1103 12 6 7.6508 5.4688 0.1397 13 7 7.9984 4.2086 0.1431 14 14 8.9516 6.7969 0.3227 15 1 9.2275 7.0243 1.7640 16 1 10.1988 6.3654 -0.3581 17 1 8.4623 8.0568 -0.2926 18 16 5.6181 3.1034 -0.0011 19 1 -0.3632 0.5138 -0.8900 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3632 0.5139 0.8899 22 1 4.3977 -0.0835 1.0271 23 1 3.6772 -0.6069 -0.5140 24 1 5.1172 0.4392 -0.5147 25 1 2.1057 3.9782 -0.0002 26 1 3.5255 6.0627 -0.0047 27 1 8.9318 3.9632 0.2410 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000254627364.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:11 Heat of formation + Delta-G solvation = -4.209928 kcal Electronic energy + Delta-G solvation = -12669.550262 eV Core-core repulsion = 10326.196660 eV Total energy + Delta-G solvation = -2343.353602 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.056 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.58374 -37.70034 -36.24244 -34.95449 -30.82306 -29.45016 -27.57374 -26.37895 -24.19472 -21.23566 -20.23944 -19.21788 -17.36659 -16.88211 -16.24604 -16.09546 -16.03624 -15.21928 -14.58757 -14.28839 -14.03707 -13.74545 -13.59007 -13.11034 -12.93361 -12.77718 -12.52351 -12.23817 -11.99036 -11.82045 -11.39452 -10.94517 -10.52521 -10.47464 -9.10078 -8.95090 -8.75356 -6.51204 0.25307 1.30146 1.40774 1.49791 1.59589 1.75621 1.98312 2.15981 2.44419 2.48787 3.04749 3.93370 4.34618 4.52778 4.60481 4.63893 4.70646 4.74910 4.81329 4.91379 5.15705 5.23209 5.52162 5.65653 5.84564 6.02056 6.11517 6.48270 6.51104 7.00351 7.91739 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.070069 B = 0.006523 C = 0.005999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 399.511738 B = 4291.415667 C = 4666.214477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.048 3.952 2 O -0.279 6.279 3 N -0.428 5.428 4 C 0.235 3.765 5 C -0.134 4.134 6 C -0.407 4.407 7 C -0.018 4.018 8 C -0.363 4.363 9 C 0.007 3.993 10 C -0.376 4.376 11 H 0.110 0.890 12 C 0.013 3.987 13 N -0.780 5.780 14 Si 1.014 2.986 15 H -0.259 1.259 16 H -0.259 1.259 17 H -0.251 1.251 18 S 0.162 5.838 19 H 0.039 0.961 20 H 0.120 0.880 21 H 0.039 0.961 22 H 0.085 0.915 23 H 0.077 0.923 24 H 0.076 0.924 25 H 0.103 0.897 26 H 0.111 0.889 27 H 0.316 0.684 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.107 -1.751 0.302 2.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 O -0.290 6.290 3 N -0.185 5.185 4 C 0.053 3.947 5 C -0.193 4.193 6 C -0.525 4.525 7 C -0.050 4.050 8 C -0.387 4.387 9 C -0.115 4.115 10 C -0.412 4.412 11 H 0.128 0.872 12 C -0.209 4.209 13 N -0.406 5.406 14 Si 0.832 3.168 15 H -0.183 1.183 16 H -0.183 1.183 17 H -0.174 1.174 18 S 0.420 5.580 19 H 0.058 0.942 20 H 0.138 0.862 21 H 0.058 0.942 22 H 0.104 0.896 23 H 0.095 0.905 24 H 0.095 0.905 25 H 0.121 0.879 26 H 0.129 0.871 27 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 1.628 -2.756 0.303 3.216 hybrid contribution -0.846 0.855 0.076 1.205 sum 0.782 -1.901 0.379 2.090 Atomic orbital electron populations 1.22743 0.78503 1.03380 1.00250 1.89592 1.22634 1.22232 1.94576 1.77262 1.12511 1.01727 1.27011 1.22383 0.90199 0.93717 0.88361 1.21173 0.99494 0.95056 1.03609 1.22658 1.00577 0.92438 1.36820 1.19974 0.98169 0.91736 0.95086 1.19877 0.92258 0.97932 1.28658 1.22468 0.96060 0.97045 0.95902 1.19817 0.90801 0.95784 1.34834 0.87199 1.27367 1.02145 0.99586 0.91806 1.68798 1.22885 1.19534 1.29343 0.84644 0.75284 0.76967 0.79884 1.18293 1.18313 1.17435 1.84054 0.97406 1.00217 1.76294 0.94226 0.86182 0.94210 0.89620 0.90453 0.90519 0.87939 0.87054 0.87035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.43 11.47 113.37 1.30 2.73 15 2 O -0.28 -11.24 10.53 -38.78 -0.41 -11.65 15 3 N -0.43 -19.79 10.99 -43.59 -0.48 -20.27 15 4 C 0.23 10.84 7.11 44.90 0.32 11.16 15 5 C -0.13 -5.13 9.52 71.24 0.68 -4.45 15 6 C -0.41 -20.31 6.42 24.23 0.16 -20.16 15 7 C -0.02 -0.92 9.84 21.56 0.21 -0.71 15 8 C -0.36 -18.48 10.15 21.81 0.22 -18.26 15 9 C 0.01 0.38 6.17 22.70 0.14 0.52 15 10 C -0.38 -17.71 9.27 23.06 0.21 -17.49 15 11 H 0.11 4.81 7.86 -2.91 -0.02 4.79 15 12 C 0.01 0.54 5.49 85.36 0.47 1.01 15 13 N -0.78 -34.02 10.66 21.89 0.23 -33.79 15 14 Si 1.01 31.07 29.57 68.60 2.03 33.10 15 15 H -0.26 -7.74 7.11 99.48 0.71 -7.03 15 16 H -0.26 -7.46 7.11 99.48 0.71 -6.75 15 17 H -0.25 -7.49 7.11 99.48 0.71 -6.78 15 18 S 0.16 7.89 19.15 -56.49 -1.08 6.81 15 19 H 0.04 1.16 8.14 -2.39 -0.02 1.14 15 20 H 0.12 2.60 8.14 -2.39 -0.02 2.58 15 21 H 0.04 1.17 8.14 -2.39 -0.02 1.15 15 22 H 0.09 3.03 8.14 -2.39 -0.02 3.01 15 23 H 0.08 2.76 7.36 -2.39 -0.02 2.74 15 24 H 0.08 2.84 7.36 -2.39 -0.02 2.82 15 25 H 0.10 5.04 7.99 -2.91 -0.02 5.01 15 26 H 0.11 5.30 8.06 -2.91 -0.02 5.28 15 27 H 0.32 11.98 8.29 -92.70 -0.77 11.21 15 Total: -1.00 -57.46 257.14 5.17 -52.29 By element: Atomic # 1 Polarization: 17.99 SS G_CDS: 1.17 Total: 19.16 kcal Atomic # 6 Polarization: -49.37 SS G_CDS: 3.71 Total: -45.66 kcal Atomic # 7 Polarization: -53.81 SS G_CDS: -0.25 Total: -54.05 kcal Atomic # 8 Polarization: -11.24 SS G_CDS: -0.41 Total: -11.65 kcal Atomic # 14 Polarization: 31.07 SS G_CDS: 2.03 Total: 33.10 kcal Atomic # 16 Polarization: 7.89 SS G_CDS: -1.08 Total: 6.81 kcal Total: -57.46 5.17 -52.29 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000254627364.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.077 kcal (2) G-P(sol) polarization free energy of solvation -57.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds