Wall clock time and date at job start Mon Mar 30 2020 03:09:11
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42901 * 1
3 3 N 1.41600 * 114.00414 * 2 1
4 4 C 1.30015 * 120.00483 * 180.02562 * 3 2 1
5 5 C 1.50701 * 119.99717 * 359.97438 * 4 3 2
6 6 C 1.46225 * 120.00200 * 179.97438 * 4 3 2
7 7 C 1.37742 * 125.08777 * 0.02562 * 6 4 3
8 8 C 1.35683 * 114.86698 * 179.97438 * 7 6 4
9 9 C 1.38794 * 114.54802 * 359.97438 * 8 7 6
10 10 C 1.39461 * 125.22565 * 179.97438 * 9 8 7
11 11 H 1.08000 * 120.00345 * 353.34228 * 10 9 8
12 12 C 1.40283 * 119.99955 * 173.33597 * 10 9 8
13 13 N 1.30720 * 119.99717 * 6.54410 * 12 10 9
14 14 Si 1.86803 * 120.00247 * 186.54739 * 12 10 9
15 15 H 1.48499 * 109.46975 * 94.98600 * 14 12 10
16 16 H 1.48499 * 109.46997 * 214.98845 * 14 12 10
17 17 H 1.48502 * 109.46534 * 334.98410 * 14 12 10
18 18 S 1.75804 * 125.08957 * 179.97438 * 6 4 3
19 19 H 1.09001 * 109.46490 * 60.00059 * 1 2 3
20 20 H 1.09000 * 109.47117 * 179.97438 * 1 2 3
21 21 H 1.08995 * 109.46709 * 300.00280 * 1 2 3
22 22 H 1.08997 * 109.47222 * 270.00041 * 5 4 3
23 23 H 1.08996 * 109.46829 * 30.00368 * 5 4 3
24 24 H 1.09001 * 109.47038 * 149.99964 * 5 4 3
25 25 H 1.08001 * 122.56545 * 359.97438 * 7 6 4
26 26 H 1.08002 * 122.72635 * 179.72895 * 8 7 6
27 27 H 0.97007 * 119.99613 * 180.02562 * 13 12 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 7 2.0050 1.2935 0.0000
4 6 3.2981 1.4295 -0.0005
5 6 4.1838 0.2102 -0.0005
6 6 3.8928 2.7653 -0.0011
7 6 3.1853 3.9471 -0.0006
8 6 3.9483 5.0690 -0.0007
9 6 5.3166 4.8357 -0.0007
10 6 6.3010 5.8236 -0.0014
11 1 6.0241 6.8618 -0.1103
12 6 7.6508 5.4688 0.1397
13 7 7.9984 4.2086 0.1431
14 14 8.9516 6.7969 0.3227
15 1 9.2275 7.0243 1.7640
16 1 10.1988 6.3654 -0.3581
17 1 8.4623 8.0568 -0.2926
18 16 5.6181 3.1034 -0.0011
19 1 -0.3632 0.5138 -0.8900
20 1 -0.3633 -1.0277 -0.0005
21 1 -0.3632 0.5139 0.8899
22 1 4.3977 -0.0835 1.0271
23 1 3.6772 -0.6069 -0.5140
24 1 5.1172 0.4392 -0.5147
25 1 2.1057 3.9782 -0.0002
26 1 3.5255 6.0627 -0.0047
27 1 8.9318 3.9632 0.2410
RHF calculation, no. of doubly occupied orbitals= 38
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000254627364.mol2 27
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:09:11
Heat of formation + Delta-G solvation = -4.209928 kcal
Electronic energy + Delta-G solvation = -12669.550262 eV
Core-core repulsion = 10326.196660 eV
Total energy + Delta-G solvation = -2343.353602 eV
No. of doubly occupied orbitals = 38
Molecular weight
(most abundant/longest-lived isotopes) = 225.056 amu
Computer time = 0.22 seconds
Orbital eigenvalues (eV)
-38.58374 -37.70034 -36.24244 -34.95449 -30.82306 -29.45016 -27.57374 -26.37895
-24.19472 -21.23566 -20.23944 -19.21788 -17.36659 -16.88211 -16.24604 -16.09546
-16.03624 -15.21928 -14.58757 -14.28839 -14.03707 -13.74545 -13.59007 -13.11034
-12.93361 -12.77718 -12.52351 -12.23817 -11.99036 -11.82045 -11.39452 -10.94517
-10.52521 -10.47464 -9.10078 -8.95090 -8.75356 -6.51204 0.25307 1.30146
1.40774 1.49791 1.59589 1.75621 1.98312 2.15981 2.44419 2.48787
3.04749 3.93370 4.34618 4.52778 4.60481 4.63893 4.70646 4.74910
4.81329 4.91379 5.15705 5.23209 5.52162 5.65653 5.84564 6.02056
6.11517 6.48270 6.51104 7.00351 7.91739
Molecular weight = 225.06amu
Principal moments of inertia in cm(-1)
A = 0.070069 B = 0.006523 C = 0.005999
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 399.511738 B = 4291.415667 C = 4666.214477
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.048 3.952
2 O -0.279 6.279
3 N -0.428 5.428
4 C 0.235 3.765
5 C -0.134 4.134
6 C -0.407 4.407
7 C -0.018 4.018
8 C -0.363 4.363
9 C 0.007 3.993
10 C -0.376 4.376
11 H 0.110 0.890
12 C 0.013 3.987
13 N -0.780 5.780
14 Si 1.014 2.986
15 H -0.259 1.259
16 H -0.259 1.259
17 H -0.251 1.251
18 S 0.162 5.838
19 H 0.039 0.961
20 H 0.120 0.880
21 H 0.039 0.961
22 H 0.085 0.915
23 H 0.077 0.923
24 H 0.076 0.924
25 H 0.103 0.897
26 H 0.111 0.889
27 H 0.316 0.684
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.107 -1.751 0.302 2.094
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.049 4.049
2 O -0.290 6.290
3 N -0.185 5.185
4 C 0.053 3.947
5 C -0.193 4.193
6 C -0.525 4.525
7 C -0.050 4.050
8 C -0.387 4.387
9 C -0.115 4.115
10 C -0.412 4.412
11 H 0.128 0.872
12 C -0.209 4.209
13 N -0.406 5.406
14 Si 0.832 3.168
15 H -0.183 1.183
16 H -0.183 1.183
17 H -0.174 1.174
18 S 0.420 5.580
19 H 0.058 0.942
20 H 0.138 0.862
21 H 0.058 0.942
22 H 0.104 0.896
23 H 0.095 0.905
24 H 0.095 0.905
25 H 0.121 0.879
26 H 0.129 0.871
27 H 0.130 0.870
Dipole moment (debyes) X Y Z Total
from point charges 1.628 -2.756 0.303 3.216
hybrid contribution -0.846 0.855 0.076 1.205
sum 0.782 -1.901 0.379 2.090
Atomic orbital electron populations
1.22743 0.78503 1.03380 1.00250 1.89592 1.22634 1.22232 1.94576
1.77262 1.12511 1.01727 1.27011 1.22383 0.90199 0.93717 0.88361
1.21173 0.99494 0.95056 1.03609 1.22658 1.00577 0.92438 1.36820
1.19974 0.98169 0.91736 0.95086 1.19877 0.92258 0.97932 1.28658
1.22468 0.96060 0.97045 0.95902 1.19817 0.90801 0.95784 1.34834
0.87199 1.27367 1.02145 0.99586 0.91806 1.68798 1.22885 1.19534
1.29343 0.84644 0.75284 0.76967 0.79884 1.18293 1.18313 1.17435
1.84054 0.97406 1.00217 1.76294 0.94226 0.86182 0.94210 0.89620
0.90453 0.90519 0.87939 0.87054 0.87035
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.05 1.43 11.47 113.37 1.30 2.73 15
2 O -0.28 -11.24 10.53 -38.78 -0.41 -11.65 15
3 N -0.43 -19.79 10.99 -43.59 -0.48 -20.27 15
4 C 0.23 10.84 7.11 44.90 0.32 11.16 15
5 C -0.13 -5.13 9.52 71.24 0.68 -4.45 15
6 C -0.41 -20.31 6.42 24.23 0.16 -20.16 15
7 C -0.02 -0.92 9.84 21.56 0.21 -0.71 15
8 C -0.36 -18.48 10.15 21.81 0.22 -18.26 15
9 C 0.01 0.38 6.17 22.70 0.14 0.52 15
10 C -0.38 -17.71 9.27 23.06 0.21 -17.49 15
11 H 0.11 4.81 7.86 -2.91 -0.02 4.79 15
12 C 0.01 0.54 5.49 85.36 0.47 1.01 15
13 N -0.78 -34.02 10.66 21.89 0.23 -33.79 15
14 Si 1.01 31.07 29.57 68.60 2.03 33.10 15
15 H -0.26 -7.74 7.11 99.48 0.71 -7.03 15
16 H -0.26 -7.46 7.11 99.48 0.71 -6.75 15
17 H -0.25 -7.49 7.11 99.48 0.71 -6.78 15
18 S 0.16 7.89 19.15 -56.49 -1.08 6.81 15
19 H 0.04 1.16 8.14 -2.39 -0.02 1.14 15
20 H 0.12 2.60 8.14 -2.39 -0.02 2.58 15
21 H 0.04 1.17 8.14 -2.39 -0.02 1.15 15
22 H 0.09 3.03 8.14 -2.39 -0.02 3.01 15
23 H 0.08 2.76 7.36 -2.39 -0.02 2.74 15
24 H 0.08 2.84 7.36 -2.39 -0.02 2.82 15
25 H 0.10 5.04 7.99 -2.91 -0.02 5.01 15
26 H 0.11 5.30 8.06 -2.91 -0.02 5.28 15
27 H 0.32 11.98 8.29 -92.70 -0.77 11.21 15
Total: -1.00 -57.46 257.14 5.17 -52.29
By element:
Atomic # 1 Polarization: 17.99 SS G_CDS: 1.17 Total: 19.16 kcal
Atomic # 6 Polarization: -49.37 SS G_CDS: 3.71 Total: -45.66 kcal
Atomic # 7 Polarization: -53.81 SS G_CDS: -0.25 Total: -54.05 kcal
Atomic # 8 Polarization: -11.24 SS G_CDS: -0.41 Total: -11.65 kcal
Atomic # 14 Polarization: 31.07 SS G_CDS: 2.03 Total: 33.10 kcal
Atomic # 16 Polarization: 7.89 SS G_CDS: -1.08 Total: 6.81 kcal
Total: -57.46 5.17 -52.29 kcal
The number of atoms in the molecule is 27
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000254627364.mol2 27
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 48.077 kcal
(2) G-P(sol) polarization free energy of solvation -57.459 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.382 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.172 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.287 kcal
(6) G-S(sol) free energy of system = (1) + (5) -4.210 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.23 seconds